Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,096,810	A→G	noncoding (66/88 nt)	serX ←	tRNA‑Ser

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,096,810	0	A	G	100.0%	477.6 / NA	160	noncoding (66/88 nt)	serX	tRNA‑Ser
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (109/51); total (109/51)

Only 100 of 183 total aligned reads displayed.

TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGG  >  NC_000913/1096720‑1096899

 cATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGccc                                                                                        <  1:3822423/93‑1 (MQ=21)

  aTCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGGTTCGAGcccc                                                                                       >  2:5670672/1‑93 (MQ=255)

   tCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGccccc                                                                                      >  2:2672682/1‑93 (MQ=37)

     cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGa                                                                                    >  2:2522086/1‑93 (MQ=255)

      ccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGAt                                                                                   >  1:7382907/1‑93 (MQ=255)

       cccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGGTTCGAGCCCCCGATa                                                                                  >  2:5598978/1‑93 (MQ=255)

        ccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATAc                                                                                 <  1:8233659/93‑1 (MQ=255)

        ccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGA‑‑GGGGGGGGTTCGAGCCCCCGCTAc                                                                                 >  2:8279253/1‑93 (MQ=14)

         cGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACg                                                                                >  1:3409832/1‑93 (MQ=255)

          ggTGTGTGCATTGTACGCACAAAACGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGt                                                                               <  2:8958675/93‑1 (MQ=14)

          ggTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGGTTCGAGCCCCCGACACg                                                                                >  1:1885224/1‑93 (MQ=11)

          ggTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGATTCGAGACCCCGATACg                                                                                >  1:8912253/1‑93 (MQ=14)

          ggTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGGCCCCGATACGt                                                                               >  2:2089818/1‑93 (MQ=255)

          ggTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCATTAAATATAGCGGGTA‑‑GGGGTGGGTTCTTGCCCCCGATACGt                                                                               >  2:6176651/1‑93 (MQ=14)

            tgtgtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCCACACGTTg                                                                             >  1:1270874/1‑93 (MQ=255)

              tgtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGGTTCGAGCCCCCGATACGTTGc                                                                            >  2:8556964/1‑93 (MQ=14)

              tgtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGGTTCGAGCCCCCGATACGTTGcc                                                                           >  1:3537321/1‑93 (MQ=255)

              tgtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGcc                                                                           >  1:1163228/1‑93 (MQ=255)

               gtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGATTCGAGCCCCCGATACGTTGcc                                                                           <  1:6106925/93‑1 (MQ=17)

               gtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGGTTCGAGCCCCCCATACGTTGCCg                                                                          >  2:10023228/1‑93 (MQ=255)

                tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGGTTCGAGCCCCCGATACGTTGcc                                                                           >  2:701245/1‑93 (MQ=14)

                tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGATTCGAGCCCCCGATACGTTGCCg                                                                          >  1:7534835/1‑93 (MQ=255)

                tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCCATACGTTGCCGt                                                                         >  2:1160216/1‑93 (MQ=255)

                 gCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGta                                                                        >  2:6676862/1‑93 (MQ=255)

                  cAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGta                                                                        >  1:467576/1‑93 (MQ=255)

                  cAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGtat                                                                       >  1:8050853/1‑93 (MQ=255)

                   aaTATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGtata                                                                      >  1:8450017/1‑93 (MQ=255)

                    atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGtata                                                                      <  2:4774077/93‑1 (MQ=255)

                    atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATac                                                                     >  2:7553019/1‑93 (MQ=255)

                     tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGGTTCGAGCCCCCGATACGTTGCCGTATac                                                                     >  1:9397105/1‑93 (MQ=14)

                     tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGGATCGAGCCCCCGATACGATGCCGTATac                                                                     >  2:1669242/1‑93 (MQ=14)

                     tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTTGAGCCCCCGGTACGTTGCCGTATaca                                                                    >  1:5377999/1‑93 (MQ=255)

                     tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATacc                                                                    >  1:2524684/1‑92 (MQ=255)

                     tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATaca                                                                    <  2:4610588/93‑1 (MQ=255)

                     tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATaca                                                                    >  1:8739572/1‑93 (MQ=255)

                     tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATaca                                                                    >  2:2725355/1‑93 (MQ=255)

                     tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATaca                                                                    >  1:7187227/1‑93 (MQ=255)

                     tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATaca                                                                    >  2:5379701/1‑93 (MQ=255)

                      ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGGTTCGAGCCCCCGATACGTTGCCGTATacac                                                                   >  2:2367228/1‑93 (MQ=255)

                      ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATacac                                                                   <  1:8791334/93‑1 (MQ=255)

                      ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATacac                                                                   >  2:625416/1‑93 (MQ=255)

                      ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATacac                                                                   >  1:399161/1‑93 (MQ=255)

                       taCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATacaca                                                                  >  2:3117717/1‑93 (MQ=255)

                       taCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATacaca                                                                  >  2:9894717/1‑93 (MQ=255)

                       taCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATacaca                                                                  >  2:5228745/1‑93 (MQ=255)

                       taCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCAGTATacaca                                                                  >  2:362320/1‑93 (MQ=255)

                        aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGGTTCGAGCCCCCGATACGTTGCCGTATacacac                                                                 >  1:8875018/1‑93 (MQ=255)

                        aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGGCCCCGATACGTTGCCGTATacacac                                                                 >  2:276501/1‑93 (MQ=255)

                          gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACt                                                                <  1:4218266/93‑1 (MQ=255)

                          gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACtt                                                               >  2:9535597/1‑93 (MQ=255)

                           aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACtt                                                               <  1:4961108/93‑1 (MQ=255)

                           aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACttt                                                              >  1:9515554/1‑93 (MQ=255)

                            aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACttt                                                              >  2:1031398/1‑93 (MQ=255)

                            aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTc                                                             <  2:6584072/93‑1 (MQ=37)

                             aaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTTCCGTATACACACTTTcc                                                            >  1:1762567/1‑93 (MQ=255)

                             aaaaaaCCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGCTTCGAAACGCAGATACATTGCCGTATACACACTTTcc                                                            >  2:3052908/1‑93 (MQ=11)

                               aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCa                                                           >  2:1504083/1‑93 (MQ=255)

                               aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGGTTCGAGCCCCCGATACGTTGCCGTATACCCCATTTCCAg                                                          >  1:7237017/1‑93 (MQ=14)

                               aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAg                                                          >  2:6089034/1‑93 (MQ=255)

                               aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAg                                                          >  1:8214155/1‑93 (MQ=255)

                                aaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAgg                                                         >  2:4432700/1‑93 (MQ=255)

                                 aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGc                                                        <  1:7319924/93‑1 (MQ=37)

                                   gCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCgg                                                      >  1:1471014/1‑92 (MQ=255)

                                   gCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGt                                                      >  2:3343145/1‑93 (MQ=37)

                                     ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGc                                                    >  2:9935763/1‑93 (MQ=21)

                                      cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAG‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGc                                                    >  1:9451724/1‑93 (MQ=255)

                                      cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTTGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCt                                                   >  1:7007062/1‑93 (MQ=16)

                                       gTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTc                                                  >  2:2448038/1‑93 (MQ=17)

                                        tACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTcc                                                 >  1:8260091/1‑93 (MQ=14)

                                                                        ggTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCg                 >  1:6000748/1‑93 (MQ=17)

                                                                         gTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGt                >  2:7068267/1‑93 (MQ=18)

                                                                         gTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGt                >  1:6710544/1‑93 (MQ=18)

                                                                         gTGA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGt                >  1:6710545/1‑93 (MQ=18)

                                                                          ggA‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGtt               <  1:9123211/92‑1 (MQ=21)

                                                                            gaggggggggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGtt               <  2:6521636/90‑1 (MQ=255)

                                                                            a‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTcc             >  1:6952036/1‑93 (MQ=37)

                                                                            a‑‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTcc             >  2:6068129/1‑93 (MQ=37)

                                                                              ggggggggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTcc             <  1:2552253/92‑1 (MQ=255)

                                                                              ggggggggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTcc             <  2:8836242/92‑1 (MQ=255)

                                                                              ggggggggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTcc             <  1:8086818/92‑1 (MQ=255)

                                                                              ggggggggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTcc             >  1:8737705/2‑93 (MQ=255)

                                                                                ggggggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTg           <  1:1848835/93‑1 (MQ=255)

                                                                                ggggggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTg           >  1:2796457/1‑93 (MQ=255)

                                                                                 gggggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGt          >  1:4840401/1‑93 (MQ=255)

                                                                                 gggggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGt          >  1:6415143/1‑93 (MQ=255)

                                                                                 gggggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGt          >  2:7286815/1‑93 (MQ=255)

                                                                                  ggggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTc         >  2:8739335/1‑93 (MQ=255)

                                                                                   gggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCt        >  1:8653262/1‑93 (MQ=255)

                                                                                   gggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCt        >  1:1153348/1‑93 (MQ=255)

                                                                                   gggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCt        >  1:6585314/1‑93 (MQ=255)

                                                                                    ggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCtt       >  1:4809837/1‑93 (MQ=255)

                                                                                    ggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCtt       >  1:6227322/1‑93 (MQ=255)

                                                                                    ggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCtt       >  1:4809836/1‑93 (MQ=255)

                                                                                    ggATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCtt       <  1:3122542/93‑1 (MQ=255)

                                                                                     gATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTg      <  2:3696030/93‑1 (MQ=255)

                                                                                      aTTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGc     <  2:3934201/93‑1 (MQ=255)

                                                                                      aTTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGc     <  1:5257542/93‑1 (MQ=255)

                                                                                       ttCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCt    >  2:7731959/1‑93 (MQ=255)

                                                                                        tCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTg   >  1:7051109/1‑93 (MQ=255)

                                                                                         cGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTgg  <  1:5783338/93‑1 (MQ=255)

TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGG  >  NC_000913/1096720‑1096899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACG  >  NC_000913/1096718‑1096903

TCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGC                                                                                              >  SRR4302540.4608643/1‑94 (MQ=5)

   CATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCC                                                                                           <  SRR4302540.3864026/94‑1 (MQ=5)

   CATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCC                                                                                           >  SRR4302540.3176298/1‑94 (MQ=5)

    ATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCC                                                                                          <  SRR4302540.6094171/94‑1 (MQ=7)

      CCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGA                                                                                        >  SRR4302540.8144901/1‑94 (MQ=12)

       CCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGG‑GGGGGGGGTTCGAGCCCCCcca                                                                                       >  SRR4302540.7502136/1‑91 (MQ=0)

       CCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGAT                                                                                       <  SRR4302540.7151941/94‑1 (MQ=15)

       CCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGAT                                                                                       >  SRR4302540.7465172/1‑94 (MQ=15)

        CCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTCGAGCCCCCGATA                                                                                      >  SRR4302540.6689969/1‑94 (MQ=9)

         CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATAC                                                                                     <  SRR4302540.8958761/94‑1 (MQ=23)

          CCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACG                                                                                    >  SRR4302540.3446973/1‑94 (MQ=25)

          CCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACG                                                                                    <  SRR4302540.8329364/94‑1 (MQ=25)

          CCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACG                                                                                    <  SRR4302540.8329366/94‑1 (MQ=25)

           CGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACG                                                                                    >  SRR4302540.9593696/1‑94 (MQ=9)

           CGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGACCCCGATACG                                                                                    >  SRR4302540.9015460/1‑94 (MQ=0)

            GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTT                                                                                  >  SRR4302540.5543729/1‑94 (MQ=30)

            GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTT                                                                                  >  SRR4302540.1781997/1‑94 (MQ=30)

             GTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGCTTCGCGCCCCCGATACGTTG                                                                                 >  SRR4302540.5187859/1‑94 (MQ=9)

             GTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCCACACGTTG                                                                                 >  SRR4302540.1283952/1‑94 (MQ=4)

              TGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGC                                                                                >  SRR4302540.400443/1‑94 (MQ=35)

               GTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTCGAGCCCCCGATACGTTGCC                                                                               >  SRR4302540.3575944/1‑94 (MQ=31)

               GTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCC                                                                               >  SRR4302540.1175304/1‑94 (MQ=38)

               GTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCC                                                                               >  SRR4302540.7013556/1‑94 (MQ=38)

                 GTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACGTTGCCG                                                                              >  SRR4302540.7619224/1‑94 (MQ=28)

                 GTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACGTTGCCG                                                                              <  SRR4302540.6174942/94‑1 (MQ=28)

                   GCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACGTTGCCGTA                                                                            >  SRR4302540.472578/1‑94 (MQ=33)

                   GCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTAT                                                                           >  SRR4302540.8144359/1‑94 (MQ=45)

                    CAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATA                                                                          >  SRR4302540.8548122/1‑94 (MQ=43)

                     AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACGTTGCCGTATA                                                                          >  SRR4302540.7088456/1‑94 (MQ=38)

                     AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATAC                                                                         >  SRR4302540.8983783/1‑94 (MQ=40)

                      ATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTTCGAGCCCCCGATACGTTGCCGTATAC                                                                         >  SRR4302540.9508920/1‑94 (MQ=27)

                      ATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTTGAGCCCCCGGTACGTTGCCGTATACA                                                                        >  SRR4302540.5437143/1‑94 (MQ=28)

                      ATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACC                                                                        >  SRR4302540.2551939/1‑94 (MQ=37)

                      ATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACA                                                                        >  SRR4302540.8841028/1‑94 (MQ=38)

                      ATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACA                                                                        >  SRR4302540.7267342/1‑94 (MQ=38)

                       TATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACAC                                                                       <  SRR4302540.1185836/94‑1 (MQ=35)

                       TATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACAC                                                                       >  SRR4302540.403306/1‑94 (MQ=35)

                       TATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACAC                                                                       <  SRR4302540.4865697/94‑1 (MQ=35)

                       TATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACAC                                                                       >  SRR4302540.8379164/1‑94 (MQ=35)

                       TATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGG‑AGGGGGGAATCGAGCCCCCGATACGTTGCCGTAAACAC                                                                       >  SRR4302540.403550/1‑94 (MQ=22)

                        ATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACA                                                                      <  SRR4302540.8893038/94‑1 (MQ=33)

                        ATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACA                                                                      >  SRR4302540.8025054/1‑94 (MQ=31)

                         TACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTCGAGCCCCCGATACGTTGCCGTATACACAC                                                                     >  SRR4302540.8977730/1‑94 (MQ=29)

                         TACGAAAAAAAAGCCCGTACTGTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑CGGGGGGATTCGAGCCCCCGATtgctttcctgataccaca                                                                     >  SRR4302540.8977729/1‑76 (MQ=12)

                            GAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTT                                                                   <  SRR4302540.4264187/94‑1 (MQ=23)

                            GAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTT                                                                  >  SRR4302540.9628253/1‑94 (MQ=25)

                             AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTT                                                                  <  SRR4302540.5014749/94‑1 (MQ=23)

                              AAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTTCCGTATACACACTTTCC                                                                >  SRR4302540.1781691/1‑94 (MQ=24)

                               tctagcgcttGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCA                                                               <  SRR4302540.4639980/84‑1 (MQ=2)

                               AAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCA                                                               <  SRR4302540.6198395/94‑1 (MQ=24)

                                AAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTCGAGCCCCCGATCCGTTGCCGTATAAACACTTTCCAG                                                              >  SRR4302540.7317740/1‑94 (MQ=22)

                                AAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTCGAGCCCCCGATACGTTGCCGTATACCCCATTTCCAG                                                              >  SRR4302540.7317741/1‑94 (MQ=22)

                                AAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAG                                                              >  SRR4302540.8309630/1‑94 (MQ=25)

                                   AAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCG                                                           <  SRR4302540.7401676/94‑1 (MQ=20)

                                   AAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCG                                                           <  SRR4302540.7415773/94‑1 (MQ=20)

                                    AGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGG                                                          >  SRR4302540.1487097/1‑94 (MQ=14)

                                       CCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGC                                                        >  SRR4302540.9563912/1‑94 (MQ=6)

                                       CCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTTGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCT                                                       >  SRR4302540.7084833/1‑94 (MQ=7)

                                       CCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCT                                                       >  SRR4302540.7079844/1‑94 (MQ=7)

                                        CGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCT                                                       <  SRR4302540.9403077/94‑1 (MQ=4)

                                        CGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTC                                                      >  SRR4302540.497314/1‑94 (MQ=5)

                                        CGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTC                                                      <  SRR4302540.6344103/94‑1 (MQ=5)

                                        CGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGCTGCCGTAAACACACTTTCCAGGCGTGCTC                                                      >  SRR4302540.1442159/1‑94 (MQ=4)

                                         GTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCC                                                     >  SRR4302540.8356078/1‑94 (MQ=2)

                                         GTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCC                                                     >  SRR4302540.3840150/1‑94 (MQ=2)

                                         GTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCC                                                     <  SRR4302540.3115537/94‑1 (MQ=2)

                                          TACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCT                                                    >  SRR4302540.1242937/1‑94 (MQ=0)

                                           ACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTT                                                   <  SRR4302540.953839/94‑1 (MQ=0)

                                           ACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTT                                                   <  SRR4302540.116525/94‑1 (MQ=0)

                                            CTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTC                                                  >  SRR4302540.7715669/1‑94 (MQ=0)

                                            CTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGACTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTC                                                  >  SRR4302540.9216766/1‑94 (MQ=0)

                                             TTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCA                                                 <  SRR4302540.7036019/94‑1 (MQ=0)

                                             TTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCA                                                 >  SRR4302540.4851900/1‑94 (MQ=0)

                                             TTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCA                                                 >  SRR4302540.4851901/1‑94 (MQ=0)

                                              TTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAG                                                >  SRR4302540.8247042/1‑94 (MQ=0)

                                              TTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAG                                                <  SRR4302540.8555266/94‑1 (MQ=0)

                                              TTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAG                                                <  SRR4302540.8645384/94‑1 (MQ=0)

                                                 GTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCA                                             >  SRR4302540.5955392/1‑94 (MQ=0)

                                                  TACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACCCACTTTCCAGGCGTGCTCCTTCAGCCAC                                            >  SRR4302540.7582553/1‑94 (MQ=0)

                                                  TACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCAC                                            >  SRR4302540.1227602/1‑94 (MQ=0)

                                                   ACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCACGCGTGCTCCTTCAGCCAC                                            >  SRR4302540.1706939/1‑94 (MQ=0)

                                                   ACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACT                                           >  SRR4302540.8690551/1‑94 (MQ=0)

                                                   ACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACT                                           >  SRR4302540.3914058/1‑94 (MQ=0)

                                                   ACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACT                                           >  SRR4302540.4425764/1‑94 (MQ=0)

                                                   ACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACT                                           <  SRR4302540.6604513/94‑1 (MQ=0)

                                                   ACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACT                                           <  SRR4302540.3045514/94‑1 (MQ=0)

                                                    CGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTC                                          >  SRR4302540.1303256/1‑94 (MQ=0)

                                                     GAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTC                                          >  SRR4302540.5974216/1‑94 (MQ=0)

                                                     GAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGTTTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCTTTCAGCCCCTCG                                         >  SRR4302540.8168267/1‑94 (MQ=0)

                                                     GAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCG                                         >  SRR4302540.6617849/1‑94 (MQ=0)

                                                     GAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCG                                         <  SRR4302540.6691130/94‑1 (MQ=0)

                                                     GAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCG                                         >  SRR4302540.2767177/1‑94 (MQ=0)

                                                       GCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGA                                       <  SRR4302540.734767/94‑1 (MQ=0)

                                                        TTCTTCTTTAAATGTGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGAC                                      <  SRR4302540.7495653/94‑1 (MQ=0)

                                                        CTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGAC                                      >  SRR4302540.9573855/1‑94 (MQ=0)

                                                        CTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGAC                                      >  SRR4302540.4264141/1‑94 (MQ=0)

                                                        CTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGAC                                      >  SRR4302540.203310/1‑94 (MQ=0)

                                                         TCTTCTTTAAATATGGCGGTGA‑GGGGGGGCTTCGAGCCCCCGATACGTTGCCGTACACACACTTTCAGGGCGTGCTCCTTCAGCCACTCGGACA                                     >  SRR4302540.6324923/1‑94 (MQ=0)

                                                         TCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACA                                     >  SRR4302540.8933024/1‑94 (MQ=0)

                                                         TCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACA                                     >  SRR4302540.4754201/1‑94 (MQ=0)

                                                          CTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACAC                                    >  SRR4302540.7696234/1‑94 (MQ=0)

                                                          CTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACAC                                    >  SRR4302540.5395707/1‑94 (MQ=0)

                                                          CTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACAC                                    <  SRR4302540.7222846/94‑1 (MQ=0)

                                                            TCTTTAAATATGGCGGTGAGGGGGGGGCTTTGAGCCCCCGATACGTTGCCGCATACAAACTTTACAGGCGTGCTtcttacgccatttggacacc                                   >  SRR4302540.6303974/1‑74 (MQ=0)

                                                             CTTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACGTTCCAGGCGTGCTCCTTCAGCCACTCGGGCACCTC                                 >  SRR4302540.4093767/1‑94 (MQ=0)

                                                             CTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTC                                 <  SRR4302540.7493412/94‑1 (MQ=0)

                                                              TTTAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCA                                <  SRR4302540.2580299/94‑1 (MQ=0)

                                                              TTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCC                                >  SRR4302540.7944221/1‑94 (MQ=0)

                                                              TTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCA                                <  SRR4302540.694636/94‑1 (MQ=0)

                                                                TAAATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACC                              >  SRR4302540.8281848/1‑94 (MQ=0)

                                                                  AATATGGCGGTGAGGGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCA                             <  SRR4302540.3020562/94‑1 (MQ=0)

                                                                  AATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACCCTTTCCAGGCGTGCTCCTTCCGCCACTCGGACACCTCACCCA                            >  SRR4302540.3725004/1‑94 (MQ=0)

                                                                  AATATGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAA                            >  SRR4302540.540650/1‑94 (MQ=0)

                                                                  AATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAA                            >  SRR4302540.6311580/1‑94 (MQ=0)

                                                                  AATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAA                            <  SRR4302540.5993057/94‑1 (MQ=0)

                                                                    TATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT                          <  SRR4302540.7053443/94‑1 (MQ=0)

                                                                     ATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATT                         <  SRR4302540.2772086/94‑1 (MQ=0)

                                                                     ATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTCCTCCTTCAGCCACTCGGACACCTCACCAAATT                         >  SRR4302540.2870397/1‑94 (MQ=0)

                                                                      TGGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTG                        >  SRR4302540.4684519/1‑94 (MQ=0)

                                                                      TGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTG                        <  SRR4302540.5762829/94‑1 (MQ=0)

                                                                       GGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGT                       >  SRR4302540.5506943/1‑94 (MQ=0)

                                                                       GGCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGT                       <  SRR4302540.9335820/94‑1 (MQ=0)

                                                                        GCGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTC                      <  SRR4302540.5093244/94‑1 (MQ=0)

                                                                         CGGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCG                     >  SRR4302540.6067255/1‑94 (MQ=2)

                                                                          GGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGT                    >  SRR4302540.6784594/1‑94 (MQ=5)

                                                                          GGTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGT                    >  SRR4302540.6784593/1‑94 (MQ=5)

                                                                           GTGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTT                   >  SRR4302540.1539237/1‑94 (MQ=7)

                                                                            GGA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTC                  <  SRR4302540.9232873/94‑1 (MQ=9)

                                                                             GA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCC                 >  SRR4302540.4766135/1‑94 (MQ=12)

                                                                             GA‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCC                 >  SRR4302540.7029389/1‑94 (MQ=12)

                                                                              agGGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCC                 >  SRR4302540.8839149/3‑94 (MQ=12)

                                                                              agGGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCC                 >  SRR4302540.8839148/3‑94 (MQ=12)

                                                                              G‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCT                <  SRR4302540.8180683/94‑1 (MQ=14)

                                                                              G‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCT                <  SRR4302540.2579761/94‑1 (MQ=14)

                                                                              A‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCT                >  SRR4302540.2439527/1‑94 (MQ=15)

                                                                              A‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCT                <  SRR4302540.2579756/94‑1 (MQ=15)

                                                                              A‑GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCT                <  SRR4302540.8180684/94‑1 (MQ=15)

                                                                                GGGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTG               >  SRR4302540.2826652/1‑94 (MQ=20)

                                                                                 GGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGT              <  SRR4302540.1869114/94‑1 (MQ=23)

                                                                                 GGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGT              <  SRR4302540.9175000/94‑1 (MQ=23)

                                                                                 GGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGT              >  SRR4302540.6486534/1‑94 (MQ=23)

                                                                                 GGGGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGT              >  SRR4302540.4892250/1‑94 (MQ=23)

                                                                                   TGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCT            >  SRR4302540.1165357/1‑94 (MQ=27)

                                                                                   GGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCT            >  SRR4302540.8753780/1‑94 (MQ=28)

                                                                                   GGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCT            >  SRR4302540.6658255/1‑94 (MQ=28)

                                                                                   GGGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCT            >  SRR4302540.6658253/1‑94 (MQ=28)

                                                                                    GGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTT           <  SRR4302540.2701626/94‑1 (MQ=30)

                                                                                    GGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTT           >  SRR4302540.4861316/1‑94 (MQ=30)

                                                                                    GGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTT           >  SRR4302540.6296581/1‑94 (MQ=30)

                                                                                    GGGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTT           >  SRR4302540.4861317/1‑94 (MQ=30)

                                                                                     GGATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTG          <  SRR4302540.3156653/94‑1 (MQ=33)

                                                                                      GATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGC         >  SRR4302540.5328115/1‑94 (MQ=35)

                                                                                       ATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCT        <  SRR4302540.5314907/94‑1 (MQ=38)

                                                                                       ATTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCT        <  SRR4302540.9752486/94‑1 (MQ=38)

                                                                                        TTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCTACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTG       >  SRR4302540.8701411/1‑94 (MQ=39)

                                                                                        TTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTG       <  SRR4302540.8820447/94‑1 (MQ=40)

                                                                                        TTCGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTG       >  SRR4302540.7129527/1‑94 (MQ=40)

                                                                                          CGAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGA     <  SRR4302540.5847221/94‑1 (MQ=46)

                                                                                           GAGCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAA    >  SRR4302540.7815113/1‑94 (MQ=49)

                                                                                             GCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACG  <  SRR4302540.327766/94‑1 (MQ=55)

                                                                                             GCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACG  <  SRR4302540.2754747/94‑1 (MQ=55)

                                                                                             GCCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACG  >  SRR4302540.2194882/1‑94 (MQ=55)

TCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACG  >  NC_000913/1096718‑1096903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`