Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,102,451 A→G intergenic (‑32/+435) csgD ← / ← b4518 CsgD/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,102,4510AG100.0% 1323.9 / NA 403intergenic (‑32/+435)csgD/b4518CsgD/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (177/226);  total (177/226)

Only 100 of 414 total aligned reads displayed.

GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA  >  NC_000913/1102361‑1102540
                                                                                          |                                                                                         
gaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGcc                                                                                         >  1:5539647/1‑93 (MQ=255)
    aTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAc                                                                                     >  1:1664496/1‑93 (MQ=255)
    aTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAc                                                                                     >  2:4185725/1‑93 (MQ=255)
    aTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAc                                                                                     >  2:9706125/1‑93 (MQ=255)
    aTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAc                                                                                     <  2:9313578/93‑1 (MQ=255)
    aTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAc                                                                                     >  1:2406930/1‑93 (MQ=255)
    aTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAc                                                                                     >  1:633992/1‑93 (MQ=255)
      ttAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAg                                                                                   >  1:9139169/1‑93 (MQ=255)
       tAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGc                                                                                  <  2:4740621/93‑1 (MQ=255)
       tAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGc                                                                                  <  1:2970339/93‑1 (MQ=255)
          tGATCAACAATAATGTATGACCATGAATTCTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGc                                                                               <  2:4029635/93‑1 (MQ=255)
          tGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGc                                                                               <  1:6731970/93‑1 (MQ=255)
          tGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGc                                                                               >  1:8651420/1‑93 (MQ=255)
            aTCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCct                                                                             >  2:5252267/1‑93 (MQ=255)
            aTCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCct                                                                             >  2:8940530/1‑93 (MQ=255)
             tCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCctc                                                                            <  1:7680673/93‑1 (MQ=255)
             tCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCctc                                                                            <  1:8863468/93‑1 (MQ=255)
              caacaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCctct                                                                           >  2:1084950/1‑93 (MQ=255)
                 caaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaa                                                                        >  1:7480100/1‑93 (MQ=255)
                 caaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaa                                                                        <  1:5329150/93‑1 (MQ=255)
                 caaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaa                                                                        <  2:8117969/93‑1 (MQ=255)
                  aataatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaaa                                                                       <  2:9098351/93‑1 (MQ=255)
                    taatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATa                                                                     >  1:4239033/1‑93 (MQ=255)
                      atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa                                                                   <  1:3390904/93‑1 (MQ=255)
                      atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa                                                                   >  2:9900331/1‑93 (MQ=255)
                      aggTATCACCAGGAATACTATGGACTTCATTAAACATAATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa                                                                   <  2:6295050/91‑1 (MQ=255)
                        gTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAg                                                                 <  1:1842555/93‑1 (MQ=255)
                        gTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAg                                                                 <  2:800334/93‑1 (MQ=255)
                             aCCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCa                                                            >  1:10018273/1‑93 (MQ=255)
                              ccATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAg                                                           >  1:3914478/1‑93 (MQ=255)
                                aTGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGaa                                                         >  2:3283690/1‑93 (MQ=255)
                                aTGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGaa                                                         <  2:1562754/93‑1 (MQ=255)
                                aTGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGaa                                                         <  2:6605299/93‑1 (MQ=255)
                                aTGAATACTATGGACTACATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGaa                                                         >  2:6709048/1‑93 (MQ=255)
                                  gAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGt                                                       <  1:3154741/93‑1 (MQ=255)
                                  gAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGt                                                       <  1:8283746/93‑1 (MQ=255)
                                     tACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACt                                                    >  1:7815844/1‑93 (MQ=255)
                                      aCTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTg                                                   <  1:3543403/93‑1 (MQ=255)
                                        tATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAc                                                 <  1:6533883/93‑1 (MQ=255)
                                        tATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAc                                                 <  1:5849889/93‑1 (MQ=255)
                                        tATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGGACTGAc                                                 >  1:5805338/1‑93 (MQ=255)
                                         aTGGACTTCATTAAACATGATGAACCCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACa                                                <  2:9388864/93‑1 (MQ=255)
                                         aTGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACa                                                >  1:4092681/1‑93 (MQ=255)
                                          tGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAg                                               >  2:8463208/1‑93 (MQ=255)
                                           ggACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGa                                              >  1:7197534/1‑93 (MQ=255)
                                           ggACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGa                                              <  2:9473347/93‑1 (MQ=255)
                                            gACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGAt                                             <  2:7295110/93‑1 (MQ=255)
                                             aCTTCATTAAACATGATGAACCCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATg                                            <  2:4850965/93‑1 (MQ=255)
                                              cTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGt                                           <  2:7194760/93‑1 (MQ=255)
                                               ttCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGtt                                          >  2:3660684/1‑93 (MQ=255)
                                               ttCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGtt                                          <  1:4456633/93‑1 (MQ=255)
                                               ttCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGtt                                          >  2:1814905/1‑93 (MQ=255)
                                                   ttAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAc                                      <  1:8318743/93‑1 (MQ=255)
                                                   ttAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAc                                      >  1:5475792/1‑93 (MQ=255)
                                                     aaaCATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCActg                                    >  2:2289908/1‑93 (MQ=255)
                                                      aaCATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCActgc                                   <  1:2072023/93‑1 (MQ=255)
                                                        cATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCActgctg                                 >  2:8724884/1‑93 (MQ=255)
                                                         atgatgAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgt                                <  1:2755440/93‑1 (MQ=255)
                                                          tgatgaAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgtg                               >  2:7666120/1‑93 (MQ=255)
                                                           gatgaAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgtgt                              >  2:4575301/1‑93 (MQ=255)
                                                             tgaAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTgtgtgt                            >  1:5079319/1‑93 (MQ=255)
                                                              gaAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgta                           <  1:2589552/93‑1 (MQ=255)
                                                               aaaCCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgtag                          >  1:1375851/1‑93 (MQ=255)
                                                                aaCCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgtagt                         >  1:8500281/1‑93 (MQ=255)
                                                                 aCCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgtagta                        >  2:3415472/1‑93 (MQ=255)
                                                                 aCCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgtagta                        >  2:5396530/1‑93 (MQ=255)
                                                                  ccccGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaa                       >  2:2495153/1‑93 (MQ=255)
                                                                   cccGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaat                      >  2:10036017/1‑93 (MQ=255)
                                                                   cccGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaat                      <  1:969565/93‑1 (MQ=255)
                                                                   cccGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaat                      <  2:2708699/93‑1 (MQ=255)
                                                                    ccGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaata                     >  1:1955322/1‑93 (MQ=255)
                                                                      gCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATaaa                   <  2:1688633/93‑1 (MQ=255)
                                                                      gCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATaaa                   >  2:6532141/1‑93 (MQ=255)
                                                                      gCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATaaa                   >  1:4562107/1‑93 (MQ=255)
                                                                       cTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAt                  >  1:57313/1‑93 (MQ=255)
                                                                        tttttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATc                 <  2:8359818/93‑1 (MQ=255)
                                                                        tttttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATc                 <  1:4905409/93‑1 (MQ=255)
                                                                        tttttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATc                 <  1:4752818/93‑1 (MQ=255)
                                                                        tttttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATc                 <  2:4312444/93‑1 (MQ=255)
                                                                         ttttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCa                >  1:1110697/1‑93 (MQ=255)
                                                                         ttttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCa                >  1:6086416/1‑93 (MQ=255)
                                                                         ttttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCa                >  1:6278184/1‑93 (MQ=255)
                                                                           ttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGc              >  2:5000559/1‑93 (MQ=255)
                                                                           ttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGc              <  2:9583325/93‑1 (MQ=255)
                                                                            tttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGcc             <  2:6069210/93‑1 (MQ=255)
                                                                              tATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCt           >  2:3786387/1‑93 (MQ=255)
                                                                              tATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCt           <  1:6042062/93‑1 (MQ=255)
                                                                                ttGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaa         <  2:1834057/93‑1 (MQ=255)
                                                                                ttGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaa         >  1:7059555/1‑93 (MQ=255)
                                                                                ttGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaa         <  1:6924037/93‑1 (MQ=255)
                                                                                 tGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaaa        <  2:6949550/93‑1 (MQ=255)
                                                                                 tGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaaa        >  2:1300278/1‑93 (MQ=255)
                                                                                 tGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaaa        <  1:6236017/93‑1 (MQ=255)
                                                                                  gATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAt       >  2:1152415/1‑93 (MQ=255)
                                                                                  gATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAt       >  1:932261/1‑93 (MQ=255)
                                                                                    tCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATgg     >  1:8766906/1‑93 (MQ=255)
                                                                                    tCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATgg     <  1:2258542/93‑1 (MQ=255)
                                                                                    tCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATgg     <  1:8117583/93‑1 (MQ=255)
                                                                                    tCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATgg     <  2:5651812/93‑1 (MQ=255)
                                                                                      gCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGt   <  2:2821830/93‑1 (MQ=255)
                                                                                          |                                                                                         
GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA  >  NC_000913/1102361‑1102540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 223 total aligned reads displayed.
AAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAAT  >  NC_000913/1102358‑1102544
                                                                                             |                                                                                             
AAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACG                                                                                               >  SRR4302540.2963626/1‑94 (MQ=60)
  AGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCC                                                                                             >  SRR4302540.3530249/1‑94 (MQ=60)
  AGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCC                                                                                             >  SRR4302540.5600663/1‑94 (MQ=60)
   GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCT                                                                                            >  SRR4302540.7833220/1‑94 (MQ=60)
   GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCT                                                                                            >  SRR4302540.2339058/1‑94 (MQ=60)
   GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCT                                                                                            <  SRR4302540.889043/94‑1 (MQ=60)
   GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCT                                                                                            <  SRR4302540.4354281/94‑1 (MQ=60)
    AAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTG                                                                                           <  SRR4302540.537727/94‑1 (MQ=60)
     AGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGA                                                                                          <  SRR4302540.7740892/94‑1 (MQ=60)
      GATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAC                                                                                         >  SRR4302540.5009827/1‑94 (MQ=60)
      GATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAC                                                                                         <  SRR4302540.8317458/94‑1 (MQ=60)
      GATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAC                                                                                         >  SRR4302540.2432883/1‑94 (MQ=60)
      GATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAC                                                                                         >  SRR4302540.2432881/1‑94 (MQ=60)
      GATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAC                                                                                         >  SRR4302540.1682619/1‑94 (MQ=60)
      GATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAC                                                                                         >  SRR4302540.640731/1‑94 (MQ=60)
       ATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACA                                                                                        >  SRR4302540.5401107/1‑94 (MQ=60)
       ATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACA                                                                                        >  SRR4302540.8397907/1‑94 (MQ=60)
       ATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACA                                                                                        <  SRR4302540.5856652/94‑1 (MQ=60)
        TTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAG                                                                                       <  SRR4302540.2323616/94‑1 (MQ=60)
        TTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAG                                                                                       <  SRR4302540.2872645/94‑1 (MQ=60)
          TAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCT                                                                                     <  SRR4302540.1104003/94‑1 (MQ=60)
          TAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCT                                                                                     >  SRR4302540.1769195/1‑94 (MQ=60)
          TAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCT                                                                                     <  SRR4302540.3003142/94‑1 (MQ=60)
          TAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCT                                                                                     <  SRR4302540.7861278/94‑1 (MQ=60)
          TAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCT                                                                                     <  SRR4302540.2611968/94‑1 (MQ=60)
          TAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCT                                                                                     <  SRR4302540.2346373/94‑1 (MQ=60)
           AGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAGAGCTG                                                                                    >  SRR4302540.2191176/1‑94 (MQ=60)
           AGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTG                                                                                    <  SRR4302540.2747296/94‑1 (MQ=60)
           AGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTG                                                                                    >  SRR4302540.6632057/1‑94 (MQ=60)
            GTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGC                                                                                   >  SRR4302540.8751921/1‑94 (MQ=60)
            GTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGC                                                                                   >  SRR4302540.404787/1‑94 (MQ=60)
             TGATCAACAATAATGTATGACCATTAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCC                                                                                  <  SRR4302540.1862877/94‑1 (MQ=60)
             TGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCC                                                                                  <  SRR4302540.6806311/94‑1 (MQ=60)
              GATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCT                                                                                 <  SRR4302540.4836768/94‑1 (MQ=60)
              GATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCT                                                                                 >  SRR4302540.489161/1‑94 (MQ=60)
              GATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCT                                                                                 >  SRR4302540.1625689/1‑94 (MQ=60)
              GATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCT                                                                                 >  SRR4302540.1365606/1‑94 (MQ=60)
                TCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCT                                                                               >  SRR4302540.8400419/1‑94 (MQ=60)
                TCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCT                                                                               <  SRR4302540.1074087/94‑1 (MQ=60)
                TCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCT                                                                               <  SRR4302540.7767614/94‑1 (MQ=60)
                TCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCT                                                                               <  SRR4302540.8966034/94‑1 (MQ=60)
                 CAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTA                                                                              >  SRR4302540.6230074/1‑94 (MQ=60)
                  AACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAA                                                                             <  SRR4302540.507573/94‑1 (MQ=60)
                   ACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAA                                                                            >  SRR4302540.7563581/1‑94 (MQ=60)
                    CAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAA                                                                           <  SRR4302540.5387529/94‑1 (MQ=60)
                    CAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAA                                                                           >  SRR4302540.4771332/1‑94 (MQ=60)
                    CAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAA                                                                           >  SRR4302540.5491958/1‑94 (MQ=60)
                     AATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAAT                                                                          >  SRR4302540.2728933/1‑94 (MQ=60)
                     AATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAAT                                                                          <  SRR4302540.8112623/94‑1 (MQ=60)
                      ATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATA                                                                         <  SRR4302540.9431475/94‑1 (MQ=60)
                      ATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATA                                                                         >  SRR4302540.4285157/1‑94 (MQ=60)
                       TAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAG                                                                        <  SRR4302540.2070963/94‑1 (MQ=60)
                        AATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGA                                                                       <  SRR4302540.6934034/94‑1 (MQ=60)
                         ATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAA                                                                      <  SRR4302540.6391563/94‑1 (MQ=60)
                         ATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAA                                                                      <  SRR4302540.7320309/94‑1 (MQ=60)
                         ATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAA                                                                      <  SRR4302540.4510293/94‑1 (MQ=60)
                          TGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAG                                                                     <  SRR4302540.3032906/94‑1 (MQ=60)
                           GTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGC                                                                    >  SRR4302540.548059/1‑94 (MQ=60)
                           GTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGC                                                                    >  SRR4302540.5890086/1‑94 (MQ=60)
                            TATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCA                                                                   <  SRR4302540.810440/94‑1 (MQ=60)
                             ATGACCATGAATACTATGGACTTCATTAAACATGATGAACCCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCAC                                                                  <  SRR4302540.614019/94‑1 (MQ=60)
                             ATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCAC                                                                  >  SRR4302540.3810751/1‑94 (MQ=60)
                             ATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCAC                                                                  >  SRR4302540.6313705/1‑94 (MQ=60)
                              TGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACC                                                                 <  SRR4302540.5911298/94‑1 (MQ=60)
                               GACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCA                                                                >  SRR4302540.10134880/1‑94 (MQ=60)
                                ACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAG                                                               >  SRR4302540.3270708/1‑94 (MQ=60)
                                ACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAG                                                               <  SRR4302540.8604196/94‑1 (MQ=60)
                                 CCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGA                                                              >  SRR4302540.1068919/1‑94 (MQ=60)
                                 CCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGA                                                              >  SRR4302540.10019432/1‑94 (MQ=60)
                                 CCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTCTGTGTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGA                                                              >  SRR4302540.9037093/1‑94 (MQ=60)
                                  CATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAA                                                             >  SRR4302540.817844/1‑94 (MQ=60)
                                   ATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGNCNNTAAAATAGAANCNCCAGNAN                                                            >  SRR4302540.1952242/1‑94 (MQ=60)
                                   ATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTGTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAG                                                            <  SRR4302540.4564100/94‑1 (MQ=60)
                                   ATGAATACTATGGACTTCAATAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAG                                                            <  SRR4302540.5893447/94‑1 (MQ=60)
                                    TGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCGCGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGT                                                           <  SRR4302540.4263774/94‑1 (MQ=60)
                                    TGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGT                                                           >  SRR4302540.625287/1‑94 (MQ=60)
                                     GAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTA                                                          <  SRR4302540.8379958/94‑1 (MQ=60)
                                     GAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTA                                                          <  SRR4302540.6307004/94‑1 (MQ=60)
                                     GAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTA                                                          <  SRR4302540.8941504/94‑1 (MQ=60)
                                     GAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTA                                                          <  SRR4302540.3189082/94‑1 (MQ=60)
                                     GAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTACCTCTAAAATAGAAGACCCAGAAGTA                                                          >  SRR4302540.8337749/1‑94 (MQ=60)
                                      AATTCTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTAC                                                         <  SRR4302540.6977766/94‑1 (MQ=60)
                                      AATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTAC                                                         >  SRR4302540.5264381/1‑94 (MQ=60)
                                      AATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTAC                                                         <  SRR4302540.9661292/94‑1 (MQ=60)
                                       ATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACT                                                        >  SRR4302540.5597878/1‑94 (MQ=60)
                                       ATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACT                                                        >  SRR4302540.7907188/1‑94 (MQ=60)
                                       ATACCATGGACTTCATTAAACATGATAAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACT                                                        <  SRR4302540.8595950/94‑1 (MQ=60)
                                        TACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTG                                                       >  SRR4302540.3300695/1‑94 (MQ=60)
                                         ACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGA                                                      >  SRR4302540.5280130/1‑94 (MQ=60)
                                         ACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGA                                                      <  SRR4302540.3582106/94‑1 (MQ=60)
                                          CTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAC                                                     >  SRR4302540.5869487/1‑94 (MQ=60)
                                          CTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAC                                                     >  SRR4302540.1789314/1‑94 (MQ=60)
                                           TATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACA                                                    <  SRR4302540.5914587/94‑1 (MQ=60)
                                           TATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACA                                                    >  SRR4302540.4136835/1‑94 (MQ=60)
                                           TATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACA                                                    <  SRR4302540.6606411/94‑1 (MQ=60)
                                           TATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACA                                                    >  SRR4302540.4136834/1‑94 (MQ=60)
                                            ATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAG                                                   >  SRR4302540.3550298/1‑94 (MQ=60)
                                            ATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAG                                                   >  SRR4302540.6407898/1‑94 (MQ=60)
                                            ATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAG                                                   <  SRR4302540.7185547/94‑1 (MQ=60)
                                             TGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGA                                                  >  SRR4302540.7277765/1‑94 (MQ=60)
                                             TGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGA                                                  >  SRR4302540.4790845/1‑94 (MQ=60)
                                              tgaattcaataaaaatgaaggaacccccgtttttttaattaaCGCACCCCTGGCAGCTGGCTTTAAAATAGAAGCACCAGAAGTACTGACAGAT                                                 <  SRR4302540.7059012/52‑1 (MQ=33)
                                              GGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGAT                                                 <  SRR4302540.1838415/94‑1 (MQ=60)
                                               GACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATG                                                <  SRR4302540.5999518/94‑1 (MQ=60)
                                                 CTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTT                                              <  SRR4302540.6563295/94‑1 (MQ=60)
                                                 CTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTT                                              <  SRR4302540.7104717/94‑1 (MQ=60)
                                                  TTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTG                                             <  SRR4302540.6594964/94‑1 (MQ=60)
                                                  TTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTG                                             <  SRR4302540.4504945/94‑1 (MQ=60)
                                                   TCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGC                                            >  SRR4302540.4592670/1‑94 (MQ=60)
                                                     ATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAC                                          >  SRR4302540.5751169/1‑94 (MQ=60)
                                                     ATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAC                                          <  SRR4302540.6334433/94‑1 (MQ=60)
                                                     ATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAC                                          >  SRR4302540.5536061/1‑94 (MQ=60)
                                                     ATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAC                                          <  SRR4302540.613394/94‑1 (MQ=60)
                                                      TTAAACATGATGAAGCCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACT                                         <  SRR4302540.3702598/94‑1 (MQ=60)
                                                      TTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACT                                         <  SRR4302540.392579/94‑1 (MQ=60)
                                                      TTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACT                                         <  SRR4302540.8415308/94‑1 (MQ=60)
                                                      TTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACT                                         <  SRR4302540.6305295/94‑1 (MQ=60)
                                                       TAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTG                                        <  SRR4302540.1174751/94‑1 (MQ=60)
                                                        AAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGC                                       <  SRR4302540.6736054/94‑1 (MQ=60)
                                                         AACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCT                                      <  SRR4302540.2094303/94‑1 (MQ=60)
                                                         AACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCT                                      >  SRR4302540.3554612/1‑94 (MQ=60)
                                                          ACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTG                                     <  SRR4302540.1993861/94‑1 (MQ=60)
                                                            ATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTG                                   <  SRR4302540.2785221/94‑1 (MQ=60)
                                                            ATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTG                                   >  SRR4302540.9130289/1‑94 (MQ=60)
                                                            ATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTG                                   <  SRR4302540.8512273/94‑1 (MQ=60)
                                                                TGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTA                               >  SRR4302540.1974054/1‑94 (MQ=60)
                                                                TGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTA                               >  SRR4302540.1974045/1‑94 (MQ=60)
                                                                 GGAACCCCCCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAG                              <  SRR4302540.2617467/94‑1 (MQ=60)
                                                                 GAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAG                              >  SRR4302540.6761916/1‑94 (MQ=60)
                                                                 GAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAG                              <  SRR4302540.7550623/94‑1 (MQ=60)
                                                                 GAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAG                              >  SRR4302540.1390452/1‑94 (MQ=60)
                                                                 GAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAG                              <  SRR4302540.2617468/94‑1 (MQ=60)
                                                                 GAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAG                              <  SRR4302540.31292/94‑1 (MQ=60)
                                                                 GAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAG                              <  SRR4302540.427685/94‑1 (MQ=60)
                                                                  AAACCCCGCTTTTTTTATTTATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGT                             <  SRR4302540.3229194/94‑1 (MQ=60)
                                                                  AAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGT                             >  SRR4302540.8599053/1‑94 (MQ=60)
                                                                  AAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGT                             >  SRR4302540.8599054/1‑94 (MQ=60)
                                                                  AAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGT                             <  SRR4302540.4730128/94‑1 (MQ=60)
                                                                  AAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGT                             <  SRR4302540.281548/94‑1 (MQ=60)
                                                                   ACCCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTA                            <  SRR4302540.5867332/94‑1 (MQ=60)
                                                                   AACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTA                            >  SRR4302540.8360146/1‑94 (MQ=60)
                                                                     CCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAAT                          <  SRR4302540.8926088/94‑1 (MQ=60)
                                                                     CCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAAT                          <  SRR4302540.4837955/94‑1 (MQ=60)
                                                                     CCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAAT                          <  SRR4302540.1982334/94‑1 (MQ=60)
                                                                     CCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAAT                          >  SRR4302540.7682484/1‑94 (MQ=60)
                                                                      CCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATA                         >  SRR4302540.1976584/1‑94 (MQ=60)
                                                                      CCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATA                         <  SRR4302540.1538054/94‑1 (MQ=60)
                                                                        CGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAA                       <  SRR4302540.6891817/94‑1 (MQ=60)
                                                                        CGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAA                       <  SRR4302540.4451382/94‑1 (MQ=60)
                                                                        CGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAA                       >  SRR4302540.4611390/1‑94 (MQ=60)
                                                                         TCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAT                      <  SRR4302540.8747564/94‑1 (MQ=60)
                                                                         GCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAT                      >  SRR4302540.9108328/1‑94 (MQ=60)
                                                                         GCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAT                      >  SRR4302540.57886/1‑94 (MQ=60)
                                                                         GCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAT                      <  SRR4302540.5947273/94‑1 (MQ=60)
                                                                         GCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAT                      >  SRR4302540.57887/1‑94 (MQ=60)
                                                                          gcTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATC                     >  SRR4302540.7417634/3‑94 (MQ=60)
                                                                          CTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATC                     <  SRR4302540.3752062/94‑1 (MQ=60)
                                                                           TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCA                    <  SRR4302540.607356/94‑1 (MQ=60)
                                                                           TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCA                    >  SRR4302540.6154151/1‑94 (MQ=60)
                                                                           TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCA                    <  SRR4302540.5563025/94‑1 (MQ=60)
                                                                           TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCA                    >  SRR4302540.6154152/1‑94 (MQ=60)
                                                                           TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCA                    >  SRR4302540.6348034/1‑94 (MQ=60)
                                                                           TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCA                    <  SRR4302540.4958198/94‑1 (MQ=60)
                                                                           TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCA                    <  SRR4302540.1665247/94‑1 (MQ=60)
                                                                           TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCA                    >  SRR4302540.1122189/1‑94 (MQ=60)
                                                                            TTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAG                   <  SRR4302540.5642541/94‑1 (MQ=60)
                                                                            TTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAG                   >  SRR4302540.9358268/1‑94 (MQ=60)
                                                                              TTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCC                 <  SRR4302540.3975479/94‑1 (MQ=60)
                                                                                TTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCT               <  SRR4302540.3134951/94‑1 (MQ=60)
                                                                                TTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCT               <  SRR4302540.9604355/94‑1 (MQ=60)
                                                                                TTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCA               <  SRR4302540.7271976/94‑1 (MQ=60)
                                                                                 TATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTA              <  SRR4302540.6085532/94‑1 (MQ=60)
                                                                                 TATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTA              <  SRR4302540.6109167/94‑1 (MQ=60)
                                                                                  ATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAA             >  SRR4302540.7138069/1‑94 (MQ=60)
                                                                                  ATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAA             >  SRR4302540.7114944/1‑94 (MQ=60)
                                                                                   TTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAA            <  SRR4302540.8411267/94‑1 (MQ=60)
                                                                                   TTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAA            <  SRR4302540.10073678/94‑1 (MQ=60)
                                                                                   TTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAA            <  SRR4302540.7001092/94‑1 (MQ=60)
                                                                                    TGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAT           <  SRR4302540.6389331/94‑1 (MQ=60)
                                                                                    TGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAT           <  SRR4302540.9552338/94‑1 (MQ=60)
                                                                                    TGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAT           >  SRR4302540.942054/1‑94 (MQ=60)
                                                                                    TGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAT           <  SRR4302540.2668796/94‑1 (MQ=60)
                                                                                     GATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATG          <  SRR4302540.4048271/94‑1 (MQ=60)
                                                                                      ATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGG         >  SRR4302540.8868523/1‑94 (MQ=60)
                                                                                      ATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGG         >  SRR4302540.8868524/1‑94 (MQ=60)
                                                                                      ATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGG         <  SRR4302540.704422/94‑1 (MQ=60)
                                                                                       TCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGG        <  SRR4302540.2282782/94‑1 (MQ=60)
                                                                                       TCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGG        <  SRR4302540.8211784/94‑1 (MQ=60)
                                                                                       TCACACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGG        <  SRR4302540.5025809/94‑1 (MQ=60)
                                                                                        CGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGTT       >  SRR4302540.7879972/1‑94 (MQ=60)
                                                                                        CGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGT       <  SRR4302540.223063/94‑1 (MQ=60)
                                                                                         GCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA      <  SRR4302540.5018540/94‑1 (MQ=60)
                                                                                         GCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA      <  SRR4302540.9289502/94‑1 (MQ=60)
                                                                                         GCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA      <  SRR4302540.9289503/94‑1 (MQ=60)
                                                                                         GCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA      <  SRR4302540.8774187/94‑1 (MQ=60)
                                                                                           ACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAA    >  SRR4302540.1100558/1‑94 (MQ=60)
                                                                                             GCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAAT  <  SRR4302540.6118493/94‑1 (MQ=60)
                                                                                             GCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAAT  <  SRR4302540.6471735/94‑1 (MQ=60)
                                                                                             GCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAAT  <  SRR4302540.7265396/94‑1 (MQ=60)
                                                                                             GCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAAT  >  SRR4302540.8471239/1‑94 (MQ=60)
                                                                                             |                                                                                             
AAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAAT  >  NC_000913/1102358‑1102544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑