Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,102,451 |
A→G |
intergenic (‑32/+435) |
csgD ← / ← b4518 |
CsgD/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,102,451 | 0 | A | G | 100.0%
| 574.0
/ NA
| 176 | intergenic (‑32/+435) | csgD/b4518 | CsgD/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (76/100); total (76/100) |
Only 100 of 181 total aligned reads displayed.
GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA > NC_000913/1102361‑1102540
|
gaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAACCCCCGC‑TTTTTTTATTGATCGCACGcc < 1:487092/93‑1 (MQ=255)
gaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGcc < 1:1641883/93‑1 (MQ=255)
gaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGcc < 2:4915545/93‑1 (MQ=255)
aagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCt > 1:1472979/1‑93 (MQ=255)
aagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCt < 2:5197289/93‑1 (MQ=255)
agaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTg < 2:5924878/93‑1 (MQ=255)
agaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTg > 2:3997545/1‑93 (MQ=255)
gaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTTAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGa > 2:5335226/1‑93 (MQ=255)
gaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGa < 1:4597368/93‑1 (MQ=255)
gaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGa > 1:749305/1‑93 (MQ=255)
tttAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACa < 2:2614162/93‑1 (MQ=255)
ttAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAg < 1:4231435/93‑1 (MQ=255)
tAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGc > 2:895667/1‑93 (MQ=255)
tAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGc < 1:4364605/93‑1 (MQ=255)
aGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCt > 1:5135634/1‑93 (MQ=255)
tCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCctc > 1:5959244/1‑93 (MQ=255)
catcaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCctct < 1:416768/90‑1 (MQ=255)
aacaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTa < 1:545988/93‑1 (MQ=255)
acaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaa > 1:2320070/1‑93 (MQ=255)
acaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaa > 1:2547251/1‑93 (MQ=255)
caaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaa > 2:2316035/1‑93 (MQ=255)
caaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaa > 2:2216600/1‑93 (MQ=255)
aataatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaaa < 2:5514290/93‑1 (MQ=255)
taatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATa > 2:1225797/1‑93 (MQ=255)
aatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAg > 2:514520/1‑93 (MQ=255)
aatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAg > 1:4071556/1‑93 (MQ=255)
atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa > 1:2152203/1‑93 (MQ=255)
atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa < 2:5274880/93‑1 (MQ=255)
atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa < 1:4094360/93‑1 (MQ=255)
atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa < 1:5355871/93‑1 (MQ=255)
atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa < 2:4483488/93‑1 (MQ=255)
gTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAACTAGAAg > 1:5251670/1‑93 (MQ=255)
gTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAg > 1:1131345/1‑93 (MQ=255)
gTATGACCATGAATACTATGGACTACATTAAACATGATGAACCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAg < 1:2843699/93‑1 (MQ=255)
tATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGc > 2:4592219/1‑93 (MQ=255)
tGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCAc < 1:2462851/93‑1 (MQ=255)
gACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGCTCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCAcc > 1:727099/1‑93 (MQ=255)
gACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTACAATAGAAGCAcc > 2:1563178/1‑93 (MQ=255)
aCCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCa < 1:5364425/93‑1 (MQ=255)
cATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGa < 1:1900767/93‑1 (MQ=255)
cATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGa > 1:2660630/1‑93 (MQ=255)
tGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAg > 1:3561123/1‑93 (MQ=255)
tGAATACTATGGACGTCATTAAACATGATGAAACCCCGC‑TTTTTTGATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAg < 1:3043722/93‑1 (MQ=255)
aaTACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTa > 1:6287099/1‑93 (MQ=255)
aTACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTAc < 2:2038457/93‑1 (MQ=255)
tACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACt > 2:3133152/1‑93 (MQ=255)
aCTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTg > 2:582760/1‑93 (MQ=255)
aCTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTg > 2:4704140/1‑93 (MQ=255)
cTATGGACTTCATTAAACATGATGAACCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa < 1:730700/93‑1 (MQ=255)
cTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa > 2:1451315/1‑93 (MQ=255)
cTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa > 1:113103/1‑93 (MQ=255)
cTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa < 1:3696290/93‑1 (MQ=255)
cTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa > 1:3169875/1‑93 (MQ=255)
cTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa < 1:5884193/93‑1 (MQ=255)
tATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAc < 1:5158198/93‑1 (MQ=255)
aTGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACa > 1:6093011/1‑93 (MQ=255)
aTGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACa > 2:3812233/1‑93 (MQ=255)
ggACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGa < 2:1819046/93‑1 (MQ=255)
ggACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGa < 1:4005440/93‑1 (MQ=255)
gACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGAt > 1:2009606/1‑93 (MQ=255)
gACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGAt < 1:6079027/93‑1 (MQ=255)
cTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGt < 2:11077/93‑1 (MQ=255)
ttCATTAAACATGATGAAACCCCGCTTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGt < 1:5538871/93‑1 (MQ=255)
ttCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGtt > 2:725000/1‑93 (MQ=255)
ttAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAc > 1:1647584/1‑93 (MQ=255)
ttAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAc > 1:5579869/1‑93 (MQ=255)
aaCATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCActgc < 1:2475633/93‑1 (MQ=255)
tgatgaAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgtg > 1:4566020/1‑93 (MQ=255)
atgaAACTCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgtgtg < 2:3486827/93‑1 (MQ=255)
atgaAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgtgtg > 2:5582612/1‑93 (MQ=255)
tgaAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTgtgtgt < 1:95735/93‑1 (MQ=255)
gaAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgta > 2:4987667/1‑93 (MQ=255)
aaaCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgtag > 2:3409956/1‑93 (MQ=255)
aaaCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgtag < 2:4257375/93‑1 (MQ=255)
aaaCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgtag < 1:3166436/93‑1 (MQ=255)
ccccGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaa < 2:1587885/93‑1 (MQ=255)
ccccGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaa < 2:4644344/93‑1 (MQ=255)
cccGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaat < 1:1835788/93‑1 (MQ=255)
cGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaataa > 2:5432017/1‑93 (MQ=255)
cGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaataa < 2:4361468/93‑1 (MQ=255)
c‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAt > 1:1392288/1‑93 (MQ=255)
c‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAt < 1:1206576/93‑1 (MQ=255)
c‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAt < 2:625822/93‑1 (MQ=255)
tttttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATc < 2:2775534/93‑1 (MQ=255)
tttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAg < 1:5148891/93‑1 (MQ=255)
ttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGccc < 2:2389164/93‑1 (MQ=255)
ttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGccc > 2:6207917/1‑93 (MQ=255)
tATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCt > 1:1967232/1‑93 (MQ=255)
aTTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGCCAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTa < 2:5135634/93‑1 (MQ=255)
aTTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTa > 1:4971375/1‑93 (MQ=255)
ttGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaa < 2:3170584/93‑1 (MQ=255)
tGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaaa < 2:5386531/93‑1 (MQ=255)
tGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaaa < 1:627358/93‑1 (MQ=255)
gATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAt < 2:458364/93‑1 (MQ=255)
cGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATggg < 1:1770335/93‑1 (MQ=255)
cGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATggg < 2:298383/93‑1 (MQ=255)
gCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGt > 2:4324233/1‑93 (MQ=255)
cacgCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTa > 2:5172129/1‑93 (MQ=255)
cacgCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTa < 1:1722234/93‑1 (MQ=255)
cacgCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTa > 1:5705655/1‑93 (MQ=255)
|
GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA > NC_000913/1102361‑1102540
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAAT > NC_000913/1102358‑1102544
|
AAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACG > SRR4302533.4326884/1‑94 (MQ=60)
AAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACG < SRR4302533.2863261/94‑1 (MQ=60)
AAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACG > SRR4302533.2772959/1‑94 (MQ=60)
AAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACG > SRR4302533.2654288/1‑94 (MQ=60)
AAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACG < SRR4302533.196393/94‑1 (MQ=60)
AAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGC > SRR4302533.4199179/1‑94 (MQ=60)
GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAACCCCCGC‑TTTTTTTATTGATCGCACGCCT < SRR4302533.490007/94‑1 (MQ=60)
GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCT > SRR4302533.1481879/1‑94 (MQ=60)
GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCT < SRR4302533.1651828/94‑1 (MQ=60)
GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCT < SRR4302533.1772062/94‑1 (MQ=60)
AGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGA > SRR4302533.753720/1‑94 (MQ=60)
GATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGAC < SRR4302533.4625217/94‑1 (MQ=60)
ATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACA < SRR4302533.5308534/94‑1 (MQ=60)
TTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGC < SRR4302533.4257011/94‑1 (MQ=60)
TAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCT < SRR4302533.617623/94‑1 (MQ=60)
TAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCT > SRR4302533.5166665/1‑94 (MQ=60)
TAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCT < SRR4302533.4390951/94‑1 (MQ=60)
AGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTG < SRR4302533.2754448/94‑1 (MQ=60)
TGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCC > SRR4302533.5914866/1‑94 (MQ=60)
ATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTC > SRR4302533.5995291/1‑94 (MQ=60)
CATCAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTA < SRR4302533.419270/94‑1 (MQ=60)
CAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTA < SRR4302533.4203554/94‑1 (MQ=60)
AACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAA > SRR4302533.2334435/1‑94 (MQ=60)
AACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAA > SRR4302533.2562928/1‑94 (MQ=60)
AACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAA > SRR4302533.562024/1‑94 (MQ=60)
AACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAA < SRR4302533.549234/94‑1 (MQ=60)
AATAATGTATGCCCATGAATCCTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAAT < SRR4302533.1429986/94‑1 (MQ=60)
ATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATA < SRR4302533.5979041/94‑1 (MQ=60)
TAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAG > SRR4302533.4096343/1‑94 (MQ=60)
AATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGA > SRR4302533.2165459/1‑94 (MQ=60)
ATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAACCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAA < SRR4302533.5388178/94‑1 (MQ=60)
ATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAA < SRR4302533.5388021/94‑1 (MQ=60)
ATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAA < SRR4302533.4119287/94‑1 (MQ=60)
TGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAACTAGAAG > SRR4302533.5283225/1‑94 (MQ=60)
TGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAG > SRR4302533.1138073/1‑94 (MQ=60)
GTATGACCATGAATACTATGGACTACATTAAACATGATGAACCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGC < SRR4302533.2861199/94‑1 (MQ=60)
ATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCAC < SRR4302533.287810/94‑1 (MQ=60)
TGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGCTCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACC > SRR4302533.731392/1‑94 (MQ=60)
TGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACC < SRR4302533.2478043/94‑1 (MQ=60)
ACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAG < SRR4302533.5396648/94‑1 (MQ=60)
CCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGA > SRR4302533.2676968/1‑94 (MQ=60)
CATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAA < SRR4302533.1912374/94‑1 (MQ=60)
ATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATGGAAGCACCAGAAG < SRR4302533.5485191/94‑1 (MQ=60)
ATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAG > SRR4302533.3583064/1‑94 (MQ=60)
ATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAG < SRR4302533.708701/94‑1 (MQ=60)
TGAATACTATGGACGTCATTAAACATGATGAAACCCCGC‑TTTTTTGATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGT < SRR4302533.3062354/94‑1 (MQ=60)
GAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTA > SRR4302533.6324607/1‑94 (MQ=60)
TACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTG > SRR4302533.1167099/1‑94 (MQ=60)
ACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGA > SRR4302533.3189385/1‑94 (MQ=60)
ACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGA > SRR4302533.113820/1‑94 (MQ=60)
CTATGGACTTCATTAAACATGATGAACCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAC < SRR4302533.735005/94‑1 (MQ=60)
CTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAC < SRR4302533.5919752/94‑1 (MQ=60)
CTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAC < SRR4302533.3718995/94‑1 (MQ=60)
TATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACA < SRR4302533.5189336/94‑1 (MQ=60)
TATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACA > SRR4302533.6129828/1‑94 (MQ=60)
ATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAG < SRR4302533.5501219/94‑1 (MQ=60)
ATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAG > SRR4302533.1899401/1‑94 (MQ=60)
GGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGAT < SRR4302533.4029823/94‑1 (MQ=60)
GGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGAT > SRR4302533.2021984/1‑94 (MQ=60)
GGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGAT < SRR4302533.6076366/94‑1 (MQ=60)
GACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATG < SRR4302533.6115793/94‑1 (MQ=60)
ACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGT > SRR4302533.2575372/1‑94 (MQ=60)
CTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTT > SRR4302533.5218248/1‑94 (MQ=60)
TTCATTAAACATGATGAAACCCCGCTTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTT < SRR4302533.5572317/94‑1 (MQ=60)
TTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTG < SRR4302533.2528316/94‑1 (MQ=60)
ATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAC > SRR4302533.5613590/1‑94 (MQ=60)
ATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAC > SRR4302533.1657564/1‑94 (MQ=60)
cgttggtgaagtgcgggttgatTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAC > SRR4302533.3268675/23‑94 (MQ=60)
AACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCT < SRR4302533.4347518/94‑1 (MQ=60)
AACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCT < SRR4302533.2490902/94‑1 (MQ=60)
ATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTG > SRR4302533.4593704/1‑94 (MQ=60)
TGATGAACCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGT < SRR4302533.4038172/94‑1 (MQ=60)
TGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGT > SRR4302533.632363/1‑94 (MQ=60)
ATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGT > SRR4302533.2339596/1‑94 (MQ=60)
TGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTA < SRR4302533.96336/94‑1 (MQ=60)
AAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGT < SRR4302533.3185918/94‑1 (MQ=60)
CCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAAT < SRR4302533.4175974/94‑1 (MQ=60)
CCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATA < SRR4302533.1846989/94‑1 (MQ=60)
CCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAA < SRR4302533.4907503/94‑1 (MQ=60)
CCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAA > SRR4302533.3273291/1‑94 (MQ=60)
CCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAA > SRR4302533.3668756/1‑94 (MQ=60)
CGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAA > SRR4302533.1556868/1‑94 (MQ=60)
GC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAT > SRR4302533.1400676/1‑94 (MQ=60)
C‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATC < SRR4302533.1213823/94‑1 (MQ=60)
C‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATC < SRR4302533.733719/94‑1 (MQ=60)
C‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATC > SRR4302533.1722443/1‑94 (MQ=60)
TTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGC < SRR4302533.5180001/94‑1 (MQ=60)
TTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGC < SRR4302533.5180000/94‑1 (MQ=60)
TTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGC < SRR4302533.198190/94‑1 (MQ=60)
TTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCC > SRR4302533.1812376/1‑94 (MQ=60)
TTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCT > SRR4302533.1979254/1‑94 (MQ=60)
TATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTA > SRR4302533.4678224/1‑94 (MQ=60)
TATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTA > SRR4302533.5001516/1‑94 (MQ=60)
ATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAA < SRR4302533.205/94‑1 (MQ=60)
TTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAA < SRR4302533.3135167/94‑1 (MQ=60)
TGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAT < SRR4302533.124930/94‑1 (MQ=60)
TGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAT < SRR4302533.5137800/94‑1 (MQ=60)
TGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAT > SRR4302533.767436/1‑94 (MQ=60)
TGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAT < SRR4302533.631045/94‑1 (MQ=60)
GATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATG < SRR4302533.3948573/94‑1 (MQ=60)
GATCGCACGCCTGACAGCTGCCTATAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATG < SRR4302533.228274/94‑1 (MQ=60)
CGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGT > SRR4302533.4511770/1‑94 (MQ=60)
CGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGT < SRR4302533.1781114/94‑1 (MQ=60)
GCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA > SRR4302533.5740117/1‑94 (MQ=60)
CACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAA < SRR4302533.1732678/94‑1 (MQ=60)
ACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAA < SRR4302533.3353805/94‑1 (MQ=60)
ACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAA > SRR4302533.4697742/1‑94 (MQ=60)
CGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAA < SRR4302533.2637587/94‑1 (MQ=60)
CGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAA < SRR4302533.2682683/94‑1 (MQ=60)
GCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAAT > SRR4302533.1673618/1‑94 (MQ=60)
GCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAAT < SRR4302533.1656172/94‑1 (MQ=60)
GCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAAT > SRR4302533.5537625/1‑94 (MQ=60)
|
AAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAAT > NC_000913/1102358‑1102544
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
