Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,125,352	T→C	W190R (TGG→CGG)	rimJ →	acetylation of N‑terminal alanine of 30S ribosomal subunit protein S5

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,125,352	0	T	C	100.0%	942.2 / NA	290	W190R (TGG→CGG)	rimJ	acetylation of N‑terminal alanine of 30S ribosomal subunit protein S5
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (142/148); total (142/148)

Only 100 of 298 total aligned reads displayed.

GGTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACTGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGT  >  NC_000913/1125262‑1125441

ggTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCgg                                                                                         >  2:8231699/1‑93 (MQ=255)

 gTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGa                                                                                        <  1:7955692/93‑1 (MQ=255)

 gTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGa                                                                                        >  2:1270429/1‑93 (MQ=255)

 gTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGa                                                                                        >  2:1433102/1‑93 (MQ=255)

   tttGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACg                                                                                      <  2:898573/93‑1 (MQ=255)

    tggAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGc                                                                                     <  2:3749677/91‑1 (MQ=255)

      gAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGccc                                                                                   >  2:7074801/1‑93 (MQ=255)

       aaaaaGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCg                                                                                  >  1:4066423/1‑93 (MQ=255)

         aaaGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGc                                                                                <  1:4196630/93‑1 (MQ=255)

           agaagGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCg                                                                              >  2:6114111/1‑93 (MQ=255)

           agaagGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCg                                                                              >  2:5554085/1‑93 (MQ=255)

             aagGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCt                                                                            >  2:8330874/1‑93 (MQ=255)

              agGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTa                                                                           >  2:8438844/1‑93 (MQ=255)

               ggCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTaa                                                                          <  2:7743447/93‑1 (MQ=255)

                gCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAg                                                                         <  2:6765876/93‑1 (MQ=255)

                 cTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAgg                                                                        <  1:9581964/93‑1 (MQ=255)

                 cTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAgg                                                                        <  2:169209/93‑1 (MQ=255)

                    agCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGgaga                                                                     <  2:4335964/92‑1 (MQ=255)

                     gCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGaa                                                                    <  2:5661281/93‑1 (MQ=255)

                     gCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGaa                                                                    <  2:9278358/93‑1 (MQ=255)

                        aaaGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAAtct                                                                 >  1:813842/1‑93 (MQ=255)

                         aaGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTCCCCCAGACCGGACGCCCGGCCGCTAAGGAGAAtctc                                                                <  1:5666980/93‑1 (MQ=255)

                         aaGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAAtctc                                                                >  2:3612490/1‑93 (MQ=255)

                         aaGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAAtctc                                                                <  1:5738154/93‑1 (MQ=255)

                         aaGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAAtctc                                                                >  1:6336486/1‑93 (MQ=255)

                         aaGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAAtctc                                                                <  1:8438601/93‑1 (MQ=255)

                          aGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCa                                                               <  1:7450167/93‑1 (MQ=255)

                          aGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCa                                                               <  1:5447021/93‑1 (MQ=255)

                           gACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCAt                                                              <  1:24040/93‑1 (MQ=255)

                           gACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCAt                                                              >  2:6537538/1‑93 (MQ=255)

                             cTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGa                                                            <  2:7359995/93‑1 (MQ=255)

                             cTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGa                                                            <  1:1270907/93‑1 (MQ=255)

                               aTCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGaaa                                                          <  2:9744589/93‑1 (MQ=255)

                               aTCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGaaa                                                          <  2:1595440/93‑1 (MQ=255)

                               aTCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGaaa                                                          >  1:1598721/1‑93 (MQ=255)

                                  tGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAatat                                                       <  2:7433322/93‑1 (MQ=255)

                                  tGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAatat                                                       >  1:8828949/1‑93 (MQ=255)

                                   gTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATc                                                      >  2:4718840/1‑93 (MQ=255)

                                    ttgattgaTGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCa                                                     >  1:6790463/1‑93 (MQ=255)

                                      tatggatGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCCCTAAGGAGAATCTCATGAAATATCAAc                                                   <  1:4942814/89‑1 (MQ=255)

                                      gattgatGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAAc                                                   <  2:2515412/93‑1 (MQ=255)

                                      gattgatGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAAc                                                   <  1:4301770/93‑1 (MQ=255)

                                       attgatGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACt                                                  >  1:2926748/1‑93 (MQ=255)

                                        ttgatGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACtt                                                 <  1:469924/93‑1 (MQ=255)

                                         tgatGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTa                                                <  1:9219548/93‑1 (MQ=255)

                                          tatGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTAc                                               <  2:2118291/92‑1 (MQ=255)

                                          gatGGACAATGGCGCGATCACGTAGTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTAc                                               >  1:60763/1‑93 (MQ=255)

                                          gatGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTAc                                               >  1:6450075/1‑93 (MQ=255)

                                           atGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACt                                              <  1:2831137/93‑1 (MQ=255)

                                            tGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTg                                             >  2:891379/1‑93 (MQ=255)

                                            tGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGACCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTg                                             >  2:1029760/1‑93 (MQ=255)

                                             ggACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGc                                            >  1:929427/1‑93 (MQ=255)

                                             ggACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGc                                            <  2:5177232/93‑1 (MQ=255)

                                             ggACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGc                                            >  2:3126432/1‑93 (MQ=255)

                                               aCAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGccc                                          <  1:8607046/93‑1 (MQ=255)

                                               aCAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGccc                                          <  2:5367811/93‑1 (MQ=255)

                                               aCAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGccc                                          <  2:6913204/93‑1 (MQ=255)

                                                 aaTGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCtt                                        >  2:8206347/1‑93 (MQ=255)

                                                 aaTGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCtt                                        >  1:1702669/1‑93 (MQ=255)

                                                  aTGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTg                                       >  1:3531264/1‑93 (MQ=255)

                                                  aTGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTg                                       >  2:6332204/1‑93 (MQ=255)

                                                  aTGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTg                                       >  2:6490890/1‑93 (MQ=255)

                                                   tGGCGGTATCACGTACTGACTGCATTAACTACCGTAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAGTATCATCTTACTGCCCTTGa                                      <  2:233437/93‑1 (MQ=255)

                                                   tGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGa                                      <  1:6843693/93‑1 (MQ=255)

                                                     gcgcGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAg                                    <  2:8873479/93‑1 (MQ=255)

                                                       gcgATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCt                                  >  1:2434014/1‑93 (MQ=255)

                                                        cgATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTc                                 >  1:3762133/1‑93 (MQ=255)

                                                          aTCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTcgc                               <  2:7959775/93‑1 (MQ=255)

                                                          aTCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTcgc                               >  1:8510444/1‑93 (MQ=255)

                                                          aTCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTcgc                               >  1:4460444/1‑93 (MQ=255)

                                                          aTCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTcgc                               <  2:893790/93‑1 (MQ=255)

                                                             aCGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTg                            >  1:700225/1‑93 (MQ=255)

                                                              cGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGa                           >  1:7172008/1‑93 (MQ=255)

                                                               gTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGAt                          <  1:7594315/93‑1 (MQ=255)

                                                                tACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGAtt                         <  1:3997009/93‑1 (MQ=255)

                                                                 aCTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTg                        <  2:9153843/93‑1 (MQ=255)

                                                                  cTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGGCCTTGAAGCTCGCGTGAGTgg                       >  2:4983483/1‑93 (MQ=255)

                                                                  cTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTgg                       >  2:7605178/1‑93 (MQ=255)

                                                                    gACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGtt                     >  2:3985045/1‑93 (MQ=255)

                                                                    gACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGtt                     >  2:7267884/1‑93 (MQ=255)

                                                                       ggCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGttgct                  <  1:8133081/93‑1 (MQ=255)

                                                                        gCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGttgctt                 <  1:9904617/93‑1 (MQ=255)

                                                                         cATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGttgcttg                >  1:3290518/1‑93 (MQ=255)

                                                                           ttAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTtgcttgct              >  1:1068104/1‑93 (MQ=255)

                                                                           ttAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTtgcttgct              >  1:8201464/1‑93 (MQ=255)

                                                                            tAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTg             <  1:2738926/93‑1 (MQ=255)

                                                                            tAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTg             >  2:224632/1‑93 (MQ=255)

                                                                            tAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTg             <  1:8324348/93‑1 (MQ=255)

                                                                                tACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGaaa         >  1:1123538/1‑93 (MQ=255)

                                                                                tACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGaaa         >  1:6137973/1‑93 (MQ=255)

                                                                                tACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGACTGGTTGCTTGCTGGaaa         >  1:8957818/1‑93 (MQ=255)

                                                                                 tccccAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGaaaa        <  1:4779536/92‑1 (MQ=255)

                                                                                   cccAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGc      >  1:7096570/1‑93 (MQ=255)

                                                                                   cccAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGc      <  1:6718502/93‑1 (MQ=255)

                                                                                    ccAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCa     >  1:7710069/1‑93 (MQ=255)

                                                                                     cAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAg    >  2:5960227/1‑93 (MQ=255)

                                                                                     cAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAg    <  2:3218207/93‑1 (MQ=255)

                                                                                      aGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAgg   >  2:9475319/1‑93 (MQ=255)

                                                                                       gACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAggg  >  2:8598555/1‑92 (MQ=255)

                                                                                       gACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGt  <  2:3469045/93‑1 (MQ=255)

GGTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACTGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGT  >  NC_000913/1125262‑1125441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGGGTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACTGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACC  >  NC_000913/1125259‑1125445

CTGGGTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACC                                                                                               <  SRR4302540.1296080/94‑1 (MQ=60)

CTGGGTTTGGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACC                                                                                               <  SRR4302540.5810836/94‑1 (MQ=60)

 TGGGTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCG                                                                                              >  SRR4302540.6262132/1‑94 (MQ=60)

   GGTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGA                                                                                            >  SRR4302540.8562449/1‑94 (MQ=60)

    GTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGAC                                                                                           <  SRR4302540.7797628/94‑1 (MQ=60)

    GTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGAC                                                                                           <  SRR4302540.8048430/94‑1 (MQ=60)

    GTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGAC                                                                                           <  SRR4302540.2440447/94‑1 (MQ=60)

      TTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGC                                                                                         >  SRR4302540.8528915/1‑94 (MQ=60)

       TTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCC                                                                                        <  SRR4302540.4246503/94‑1 (MQ=60)

        TGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCC                                                                                       <  SRR4302540.7105247/94‑1 (MQ=60)

         GAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCG                                                                                      >  SRR4302540.6422098/1‑94 (MQ=60)

         GAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCG                                                                                      >  SRR4302540.4110265/1‑94 (MQ=60)

           AAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGC                                                                                    >  SRR4302540.801608/1‑94 (MQ=60)

            AAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCC                                                                                   <  SRR4302540.4242279/94‑1 (MQ=60)

            AAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCC                                                                                   <  SRR4302540.5606196/94‑1 (MQ=60)

            AAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCC                                                                                   >  SRR4302540.358801/1‑94 (MQ=60)

             AAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCG                                                                                  >  SRR4302540.4220423/1‑94 (MQ=60)

              AGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGC                                                                                 >  SRR4302540.5326094/1‑94 (MQ=60)

                AAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTA                                                                               <  SRR4302540.5392352/94‑1 (MQ=60)

                AAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTA                                                                               >  SRR4302540.7106675/1‑94 (MQ=60)

                  GGCTATGCGAAATACTATCTGTTGATTGATGAACAATGGCGCGATAGCGTTCTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAG                                                                             <  SRR4302540.6025461/94‑1 (MQ=60)

                  GGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAG                                                                             <  SRR4302540.2343135/94‑1 (MQ=60)

                  GGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAG                                                                             <  SRR4302540.3371238/94‑1 (MQ=60)

                    CTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGA                                                                           <  SRR4302540.9695108/94‑1 (MQ=60)

                    CTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGA                                                                           >  SRR4302540.2481361/1‑94 (MQ=60)

                    CTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGA                                                                           <  SRR4302540.9747644/94‑1 (MQ=60)

                    CTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGA                                                                           >  SRR4302540.6266006/1‑94 (MQ=60)

                      ATGCGAAAGACTATCTGTTGATTGGTGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGA                                                                         <  SRR4302540.6294035/94‑1 (MQ=60)

                      ATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGA                                                                         >  SRR4302540.1132986/1‑94 (MQ=60)

                      ATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGA                                                                         <  SRR4302540.8131674/94‑1 (MQ=60)

                        GCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAAT                                                                       >  SRR4302540.1198872/1‑94 (MQ=60)

                        GCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAAT                                                                       <  SRR4302540.2942822/94‑1 (MQ=60)

                         CGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATC                                                                      >  SRR4302540.7571409/1‑94 (MQ=60)

                          GAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCT                                                                     >  SRR4302540.822485/1‑94 (MQ=60)

                          GAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCT                                                                     >  SRR4302540.3475891/1‑94 (MQ=60)

                          GAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCT                                                                     >  SRR4302540.9503089/1‑94 (MQ=60)

                           AAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTC                                                                    >  SRR4302540.6407047/1‑94 (MQ=60)

                            AAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTCCCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCA                                                                   <  SRR4302540.5729388/94‑1 (MQ=60)

                            AAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCA                                                                   >  SRR4302540.933823/1‑94 (MQ=60)

                            AAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCA                                                                   <  SRR4302540.8536560/94‑1 (MQ=60)

                            AAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCA                                                                   <  SRR4302540.5801395/94‑1 (MQ=60)

                            AAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCA                                                                   <  SRR4302540.412112/94‑1 (MQ=60)

                             AGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCAT                                                                  <  SRR4302540.486266/94‑1 (MQ=60)

                             AGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCAT                                                                  >  SRR4302540.10114424/1‑94 (MQ=60)

                             AGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCAT                                                                  <  SRR4302540.5506959/94‑1 (MQ=60)

                             AGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCAT                                                                  <  SRR4302540.7533205/94‑1 (MQ=60)

                             AGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCAT                                                                  >  SRR4302540.1702730/1‑94 (MQ=60)

                              GACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATG                                                                 <  SRR4302540.24304/94‑1 (MQ=60)

                              GACTAGCTGTGGATTGATGGACAATGGCGCGCTCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATG                                                                 <  SRR4302540.24306/94‑1 (MQ=60)

                               ACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGA                                                                <  SRR4302540.8282519/94‑1 (MQ=60)

                               ACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGA                                                                >  SRR4302540.2837857/1‑94 (MQ=60)

                               ACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGA                                                                >  SRR4302540.2837856/1‑94 (MQ=60)

                                CTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAA                                                               <  SRR4302540.1283985/94‑1 (MQ=60)

                                CTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAA                                                               <  SRR4302540.9611902/94‑1 (MQ=60)

                                 TATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCGAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAA                                                              >  SRR4302540.6920048/1‑94 (MQ=60)

                                 TATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAA                                                              >  SRR4302540.1616202/1‑94 (MQ=60)

                                  ATCTGTTGATTGATGGGCAATGTCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAGGTAGAGTCTCATGAAAT                                                             >  SRR4302540.6879031/1‑94 (MQ=60)

                                  ATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAAT                                                             <  SRR4302540.4789403/94‑1 (MQ=60)

                                  ATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAAT                                                             >  SRR4302540.3037316/1‑94 (MQ=60)

                                   TCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATA                                                            <  SRR4302540.8797601/94‑1 (MQ=60)

                                    CTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATAT                                                           <  SRR4302540.4253978/94‑1 (MQ=60)

                                    CTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATAT                                                           >  SRR4302540.8931047/1‑94 (MQ=60)

                                      GTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCA                                                         <  SRR4302540.4378227/94‑1 (MQ=60)

                                      GTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCA                                                         <  SRR4302540.580708/94‑1 (MQ=60)

                                      GTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCA                                                         >  SRR4302540.6865560/1‑94 (MQ=60)

                                       TTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAA                                                        <  SRR4302540.2890876/94‑1 (MQ=60)

                                        TGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAAC                                                       <  SRR4302540.9157483/94‑1 (MQ=60)

                                         tatgGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCCCTAAGGAGAATCTCATGAAATATCAACT                                                      <  SRR4302540.4996160/90‑1 (MQ=60)

                                         TATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACT                                                      <  SRR4302540.8537425/94‑1 (MQ=60)

                                         GATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACT                                                      >  SRR4302540.2958836/1‑94 (MQ=60)

                                         GATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACT                                                      <  SRR4302540.4506414/94‑1 (MQ=60)

                                         GATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACT                                                      <  SRR4302540.4348593/94‑1 (MQ=60)

                                          ATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTT                                                     >  SRR4302540.8482860/1‑94 (MQ=60)

                                          ATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTT                                                     >  SRR4302540.7185818/1‑94 (MQ=60)

                                          ATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTT                                                     >  SRR4302540.7185819/1‑94 (MQ=60)

                                           TTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTA                                                    <  SRR4302540.5636549/94‑1 (MQ=60)

                                           TTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTA                                                    <  SRR4302540.474953/94‑1 (MQ=60)

                                           TTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTA                                                    >  SRR4302540.760948/1‑94 (MQ=60)

                                            TGATGGACAATGGCGCGATCACGTAGTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTAC                                                   >  SRR4302540.61376/1‑94 (MQ=60)

                                            TGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTAC                                                   <  SRR4302540.9330129/94‑1 (MQ=60)

                                            TGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTAC                                                   >  SRR4302540.8705685/1‑94 (MQ=60)

                                            TGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTAC                                                   <  SRR4302540.4539158/94‑1 (MQ=60)

                                            TGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTAC                                                   >  SRR4302540.6521867/1‑94 (MQ=60)

                                            TGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTAC                                                   <  SRR4302540.3876201/94‑1 (MQ=60)

                                             GATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACT                                                  >  SRR4302540.5778521/1‑94 (MQ=60)

                                              ATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTG                                                 <  SRR4302540.2861758/94‑1 (MQ=60)

                                              ATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTG                                                 <  SRR4302540.1712617/94‑1 (MQ=60)

                                              ATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTG                                                 >  SRR4302540.4816623/1‑94 (MQ=60)

                                               TGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTACGGAGAATCTCATGAAATATCAACTTACTGC                                                >  SRR4302540.939204/1‑94 (MQ=60)

                                               TGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGC                                                >  SRR4302540.939205/1‑94 (MQ=60)

                                                  ACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCT                                             <  SRR4302540.7947043/94‑1 (MQ=60)

                                                  ACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCT                                             <  SRR4302540.7465696/94‑1 (MQ=60)

                                                  ACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCT                                             <  SRR4302540.8627060/94‑1 (MQ=60)

                                                  ACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCT                                             <  SRR4302540.8707057/94‑1 (MQ=60)

                                                   CAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTT                                            >  SRR4302540.1721097/1‑94 (MQ=60)

                                                   CAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTT                                            <  SRR4302540.6884106/94‑1 (MQ=60)

                                                    AATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTG                                           >  SRR4302540.3569806/1‑94 (MQ=60)

                                                      TGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAA                                         >  SRR4302540.6119339/1‑94 (MQ=60)

                                                      TGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAA                                         <  SRR4302540.6919504/94‑1 (MQ=60)

                                                      TGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAA                                         <  SRR4302540.9727332/94‑1 (MQ=60)

                                                       GGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAG                                        <  SRR4302540.824635/94‑1 (MQ=60)

                                                       GGCGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAG                                        <  SRR4302540.6201426/94‑1 (MQ=60)

                                                         CGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCTGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCT                                      >  SRR4302540.6601922/1‑94 (MQ=60)

                                                         CGCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCT                                      >  SRR4302540.2460236/1‑94 (MQ=60)

                                                          GCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTC                                     >  SRR4302540.3803176/1‑94 (MQ=60)

                                                          GCGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTC                                     >  SRR4302540.2672831/1‑94 (MQ=60)

                                                           CGATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCG                                    >  SRR4302540.3073641/1‑94 (MQ=60)

                                                            GATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCTCTTGAAGCTCGC                                   >  SRR4302540.6409133/1‑94 (MQ=60)

                                                            GATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGC                                   >  SRR4302540.905067/1‑94 (MQ=60)

                                                            GATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGC                                   >  SRR4302540.4508801/1‑94 (MQ=60)

                                                            GATCACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGC                                   >  SRR4302540.8609348/1‑94 (MQ=60)

                                                               CACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTG                                <  SRR4302540.808695/94‑1 (MQ=60)

                                                               CACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTG                                >  SRR4302540.707742/1‑94 (MQ=60)

                                                               CACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTG                                >  SRR4302540.3917673/1‑94 (MQ=60)

                                                               CACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTG                                <  SRR4302540.8865641/94‑1 (MQ=60)

                                                                ACGTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGA                               >  SRR4302540.7251952/1‑94 (MQ=60)

                                                                  GTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATT                             <  SRR4302540.7679636/94‑1 (MQ=60)

                                                                  GTACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATT                             >  SRR4302540.1245162/1‑94 (MQ=60)

                                                                   TACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTG                            <  SRR4302540.4040027/94‑1 (MQ=60)

                                                                   TACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTG                            <  SRR4302540.4040026/94‑1 (MQ=60)

                                                                    ACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGG                           >  SRR4302540.6856323/1‑94 (MQ=60)

                                                                    ACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGG                           <  SRR4302540.1448635/94‑1 (MQ=60)

                                                                    ACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGG                           >  SRR4302540.6771077/1‑94 (MQ=60)

                                                                    ACTGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGCGATTGG                           >  SRR4302540.6771076/1‑94 (MQ=60)

                                                                      TGACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTT                         <  SRR4302540.4095026/94‑1 (MQ=60)

                                                                       GACGGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTG                        <  SRR4302540.3726604/94‑1 (MQ=60)

                                                                          GGCATTATCTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTT                     <  SRR4302540.8327382/94‑1 (MQ=60)

                                                                          GGCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTT                     <  SRR4302540.8227478/94‑1 (MQ=60)

                                                                           GCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTG                    <  SRR4302540.10020332/94‑1 (MQ=60)

                                                                           GCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTG                    >  SRR4302540.3326516/1‑94 (MQ=60)

                                                                           GCATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTG                    <  SRR4302540.6829172/94‑1 (MQ=60)

                                                                             ATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCT                  >  SRR4302540.8296770/1‑94 (MQ=60)

                                                                             ATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCT                  >  SRR4302540.1078988/1‑94 (MQ=60)

                                                                             ATTAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCT                  <  SRR4302540.4630160/94‑1 (MQ=60)

                                                                               TAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGG                <  SRR4302540.2768492/94‑1 (MQ=60)

                                                                               TAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGG                <  SRR4302540.8420963/94‑1 (MQ=60)

                                                                               TAACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGG                >  SRR4302540.1773951/1‑94 (MQ=60)

                                                                                AACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGA               <  SRR4302540.5775227/94‑1 (MQ=60)

                                                                                 ACTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAA              >  SRR4302540.7404323/1‑94 (MQ=60)

                                                                                  CTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAA             >  SRR4302540.1135217/1‑94 (MQ=60)

                                                                                  CTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAA             >  SRR4302540.6206333/1‑94 (MQ=60)

                                                                                  CTACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGACTGGTTGCTTGCTGGAAA             >  SRR4302540.9063680/1‑94 (MQ=60)

                                                                                  CTACCCCAGACCGGACGCCCGGCCGCTAACGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAA             <  SRR4302540.7028365/94‑1 (MQ=60)

                                                                                   TACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAA            >  SRR4302540.8404920/1‑94 (MQ=60)

                                                                                   TACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAA            >  SRR4302540.1538568/1‑94 (MQ=60)

                                                                                    TCCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAG           <  SRR4302540.4830614/94‑1 (MQ=60)

                                                                                    CCCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAG           <  SRR4302540.8232627/94‑1 (MQ=60)

                                                                                    ACCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAG           <  SRR4302540.4830615/94‑1 (MQ=60)

                                                                                     CCCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGC          >  SRR4302540.7175543/1‑94 (MQ=60)

                                                                                      CCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCA         <  SRR4302540.6792626/94‑1 (MQ=60)

                                                                                      CCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCA         >  SRR4302540.7798656/1‑94 (MQ=60)

                                                                                      CCCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCA         >  SRR4302540.7798655/1‑94 (MQ=60)

                                                                                       CCAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAG        >  SRR4302540.9014269/1‑94 (MQ=60)

                                                                                        CAGACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGGTGCGTGCTGGAAAAGCAGG       >  SRR4302540.9091850/1‑94 (MQ=60)

                                                                                          GACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTG     >  SRR4302540.6395617/1‑94 (MQ=60)

                                                                                          GACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTG     <  SRR4302540.6194615/94‑1 (MQ=60)

                                                                                          GACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTG     >  SRR4302540.6137388/1‑94 (MQ=60)

                                                                                           ACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGA    >  SRR4302540.5950501/1‑94 (MQ=60)

                                                                                           ACCGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGA    <  SRR4302540.2361532/94‑1 (MQ=60)

                                                                                             CGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACC  >  SRR4302540.5970785/1‑94 (MQ=60)

                                                                                             CGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACC  >  SRR4302540.9805802/1‑94 (MQ=60)

CTGGGTTTTGAAAAAGAAGGCTATGCGAAAGACTATCTGTTGATTGATGGACAATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACTGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACC  >  NC_000913/1125259‑1125445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`