Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,137,414	A→G	D274G (GAC→GGC)	flgJ →	FlgJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,137,414	0	A	G	100.0%	667.7 / NA	209	D274G (GAC→GGC)	flgJ	FlgJ
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (89/120); total (89/120)

Only 100 of 213 total aligned reads displayed.

CGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAA  >  NC_000913/1137324‑1137503

  gATTACGTTGGGCTGTTAACCCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGcgcg                                                                                       <  2:2777670/93‑1 (MQ=255)

   aTTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCgg                                                                                      >  1:5736408/1‑93 (MQ=255)

       cGTTGGGCTGTTAACGCGTACCCCGCCCTCCGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTa                                                                                  <  2:7584548/93‑1 (MQ=255)

       cGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTa                                                                                  <  2:57326/93‑1 (MQ=255)

       cGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTa                                                                                  >  2:9098987/1‑93 (MQ=255)

        gTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTAt                                                                                 >  2:1070971/1‑93 (MQ=255)

         ttGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATg                                                                                >  1:283705/1‑93 (MQ=255)

         ttGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATg                                                                                >  1:2705719/1‑93 (MQ=255)

         ttGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATg                                                                                >  2:2557942/1‑93 (MQ=255)

          tGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGc                                                                               >  1:7908086/1‑93 (MQ=255)

             gCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCAc                                                                            <  1:5592547/93‑1 (MQ=255)

               tGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCg                                                                          >  2:2233734/1‑93 (MQ=255)

                gTTAACGCGTAACCCGCGCTCCGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGa                                                                         <  2:2294930/93‑1 (MQ=255)

                gTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGa                                                                         >  1:1187976/1‑93 (MQ=255)

                 ttAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGACCTACAGGGCGCGGGCGATGCCACCGAt                                                                        >  2:620224/1‑93 (MQ=255)

                   aaCGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATcc                                                                      <  2:4788721/93‑1 (MQ=255)

                    aCGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCt                                                                     >  1:2019469/1‑93 (MQ=255)

                    aCGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCt                                                                     >  1:5163904/1‑93 (MQ=255)

                     cgcgTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTc                                                                    >  1:8532322/1‑93 (MQ=255)

                     cgcgTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTc                                                                    <  2:1821886/93‑1 (MQ=255)

                      gcgTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCa                                                                   <  1:6101793/93‑1 (MQ=255)

                        gTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACt                                                                 >  2:4659600/1‑93 (MQ=255)

                         tAACCCGCGCTACGCCGCCGTGACGACCGCCGTGAGTGCGGAACGGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCTAACGATCCTCACTa                                                                >  2:6602385/1‑93 (MQ=255)

                            cccGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGc                                                             >  2:5664265/1‑93 (MQ=255)

                            cccGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGc                                                             <  1:645793/93‑1 (MQ=255)

                              cgcgCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGccc                                                           <  2:3258664/93‑1 (MQ=255)

                               gcgcTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCg                                                          <  1:617080/93‑1 (MQ=255)

                                 gcTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCa                                                        >  1:2188918/1‑93 (MQ=255)

                                 gcTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCa                                                        >  1:3277604/1‑93 (MQ=255)

                                     cgccgcCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACt                                                    <  1:9311059/93‑1 (MQ=255)

                                     cgccgcCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGACCCTCACTATGCCCGCAAACt                                                    <  2:9775728/93‑1 (MQ=255)

                                      gccgccGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTc                                                   <  1:3821945/93‑1 (MQ=255)

                                       ccgccgTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCa                                                  <  1:1238192/93‑1 (MQ=255)

                                         gccgTGACGACCGCCGCGAGTGCGGAACGGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCAcc                                                <  2:6525360/93‑1 (MQ=255)

                                         gccgTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCAcc                                                >  2:7268305/1‑93 (MQ=255)

                                         gccgTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCAcc                                                <  1:2916272/93‑1 (MQ=255)

                                           cgTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCaa                                              >  2:4882699/1‑93 (MQ=255)

                                            gTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAAc                                             <  2:2338106/93‑1 (MQ=255)

                                             tGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACa                                            <  2:4469245/93‑1 (MQ=255)

                                             tGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACa                                            >  1:7277578/1‑93 (MQ=255)

                                                cgacCGCCGCGAGTGCGGAACGGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGa                                         <  1:4925403/93‑1 (MQ=255)

                                                cgacCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGa                                         <  1:7717680/93‑1 (MQ=255)

                                                cgacCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGa                                         <  1:1929664/93‑1 (MQ=255)

                                                  acCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGAtt                                       <  2:5376524/93‑1 (MQ=255)

                                                  acCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGAtt                                       <  2:148435/93‑1 (MQ=255)

                                                   ccgccgCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTc                                      >  2:575601/1‑93 (MQ=255)

                                                   ccgccgCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTc                                      <  1:2598200/93‑1 (MQ=255)

                                                   ccgccgCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTc                                      >  2:2113604/1‑93 (MQ=255)

                                                    cgccgcGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTca                                     <  2:423003/93‑1 (MQ=255)

                                                       cgcgAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTcagca                                  <  1:4726939/93‑1 (MQ=255)

                                                        gcgAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTcagcag                                 >  1:4011780/1‑93 (MQ=255)

                                                          gAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAt                               >  2:7817855/1‑93 (MQ=255)

                                                           aGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATg                              <  1:4157361/93‑1 (MQ=255)

                                                            gTGCGGAACAGGGGGCGCAGGACCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGa                             >  1:1588073/1‑93 (MQ=255)

                                                             tGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCTCCAACATGATTCAGCAGATGaa                            <  1:5412390/93‑1 (MQ=255)

                                                             tGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGaa                            <  2:3525057/93‑1 (MQ=255)

                                                             tGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGaa                            <  2:1720868/93‑1 (MQ=255)

                                                             tGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGaa                            >  2:8245132/1‑93 (MQ=255)

                                                              gCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGaaa                           <  2:6862534/93‑1 (MQ=255)

                                                              gCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGaaa                           <  1:8344693/93‑1 (MQ=255)

                                                               cGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAAt                          >  1:8745439/1‑93 (MQ=255)

                                                               cGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAAt                          <  1:826297/93‑1 (MQ=255)

                                                                ggAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATc                         <  2:1319322/93‑1 (MQ=255)

                                                                ggAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATc                         <  1:9759724/93‑1 (MQ=255)

                                                                 gAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCg                        >  1:2735577/1‑93 (MQ=255)

                                                                 gAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCg                        >  2:4952577/1‑93 (MQ=255)

                                                                   aCAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAt                      <  2:5899815/93‑1 (MQ=255)

                                                                   aCAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAt                      <  2:8186903/93‑1 (MQ=255)

                                                                   aCAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAt                      >  2:4761405/1‑93 (MQ=255)

                                                                   aCAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAt                      <  2:7976153/93‑1 (MQ=255)

                                                                    cAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATa                     <  1:742176/93‑1 (MQ=255)

                                                                    cAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATa                     <  1:862104/93‑1 (MQ=255)

                                                                         ggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGa                <  2:379723/93‑1 (MQ=255)

                                                                         ggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGa                <  2:1530958/93‑1 (MQ=255)

                                                                           cgcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACa              <  1:665499/93‑1 (MQ=255)

                                                                           cgcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACa              >  1:6720246/1‑93 (MQ=255)

                                                                           cgcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACa              <  2:89640/93‑1 (MQ=255)

                                                                            gcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACaa             <  1:10027797/93‑1 (MQ=255)

                                                                            gcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACaa             >  1:3053752/1‑93 (MQ=255)

                                                                            gcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACaa             <  2:3635989/93‑1 (MQ=255)

                                                                            gcAGGCCATCCGGGGCGCGGGCTATGCCACCGCTCCTCACTATGACCGCAAACTCACCAACATGAAACAGCAGATGAACTCGATAAGCGACaa             <  1:8921868/93‑1 (MQ=255)

                                                                             cAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAg            <  2:3947268/93‑1 (MQ=255)

                                                                             cAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAg            >  2:7435750/1‑93 (MQ=255)

                                                                              aGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAgg           <  1:3599569/93‑1 (MQ=255)

                                                                              aGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAgg           >  1:7859137/1‑93 (MQ=255)

                                                                              aGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAgg           <  2:325451/93‑1 (MQ=255)

                                                                               ggCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAggg          >  1:1105204/1‑92 (MQ=255)

                                                                               ggCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGt          <  1:8274305/93‑1 (MQ=255)

                                                                               ggCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGt          <  2:3992993/93‑1 (MQ=255)

                                                                                gCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTg         >  1:9073722/1‑93 (MQ=255)

                                                                                gCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTg         <  2:4422864/93‑1 (MQ=255)

                                                                                 cccTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGa        <  2:9527495/93‑1 (MQ=255)

                                                                                  ccTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAg       >  2:3030103/1‑93 (MQ=255)

                                                                                    tACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCa     <  1:434389/93‑1 (MQ=255)

                                                                                    tACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCa     <  2:9157810/93‑1 (MQ=255)

                                                                                     aCAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCaa    >  1:6222730/1‑93 (MQ=255)

                                                                                     aCAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCaa    <  2:8443326/93‑1 (MQ=255)

                                                                                      cAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCaaa   <  1:2295565/93‑1 (MQ=255)

                                                                                       aGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCaaaa  >  2:8359134/1‑93 (MQ=255)

                                                                                       aGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCaaaa  <  1:196458/93‑1 (MQ=255)

CGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAA  >  NC_000913/1137324‑1137503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCT  >  NC_000913/1137321‑1137506

tggtGGATTACGTTGGGCTGTTAACGCGTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGG                                                                                              <  SRR4302540.8319457/90‑1 (MQ=60)

TGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGG                                                                                              <  SRR4302540.629207/94‑1 (MQ=60)

TGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGG                                                                                              >  SRR4302540.1385182/1‑94 (MQ=60)

 GTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCCGGACCTACAGGGC                                                                                             >  SRR4302540.4338067/1‑94 (MQ=60)

 GTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGC                                                                                             <  SRR4302540.2293782/94‑1 (MQ=60)

 GTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGC                                                                                             >  SRR4302540.4357686/1‑94 (MQ=60)

 GTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGC                                                                                             >  SRR4302540.8942391/1‑94 (MQ=60)

  TCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCG                                                                                            >  SRR4302540.8774604/1‑94 (MQ=60)

     GATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGG                                                                                         >  SRR4302540.5799606/1‑94 (MQ=60)

        TACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCT                                                                                      <  SRR4302540.2121339/94‑1 (MQ=60)

        TACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCT                                                                                      >  SRR4302540.5640464/1‑94 (MQ=60)

          CGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTAT                                                                                    <  SRR4302540.6311796/94‑1 (MQ=60)

           GTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATG                                                                                   >  SRR4302540.2734905/1‑94 (MQ=60)

           GTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATG                                                                                   >  SRR4302540.286498/1‑94 (MQ=60)

            TTGGGCTGTTAACGCGTAACCCGCGCTCCGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGC                                                                                  <  SRR4302540.6291650/94‑1 (MQ=60)

            TTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGC                                                                                  >  SRR4302540.8000300/1‑94 (MQ=60)

               GGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACGGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCAC                                                                               >  SRR4302540.738849/1‑94 (MQ=60)

                GCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACC                                                                              <  SRR4302540.5654082/94‑1 (MQ=60)

                  TGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGA                                                                            >  SRR4302540.1200224/1‑94 (MQ=60)

                   GTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGAT                                                                           >  SRR4302540.2334982/1‑94 (MQ=60)

                      AACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCT                                                                        >  SRR4302540.2041296/1‑94 (MQ=60)

                      AACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCT                                                                        <  SRR4302540.3290256/94‑1 (MQ=60)

                      AACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCT                                                                        >  SRR4302540.5220053/1‑94 (MQ=60)

                      AACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCC                                                                        >  SRR4302540.446919/1‑94 (MQ=60)

                       ACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTC                                                                       >  SRR4302540.8631454/1‑94 (MQ=60)

                        CGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCA                                                                      <  SRR4302540.6040104/94‑1 (MQ=60)

                         GCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCAC                                                                     <  SRR4302540.6169731/94‑1 (MQ=60)

                           GTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTA                                                                   <  SRR4302540.4837527/94‑1 (MQ=60)

                            TAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTAT                                                                  >  SRR4302540.2170371/1‑94 (MQ=60)

                             AACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATG                                                                 <  SRR4302540.6757352/94‑1 (MQ=60)

                               ctcgctctcCGCCGCCGTGACGACCGCCGCGAGTGCGTAACAGGGGGCGCAGGCCCTACAGGGCGCTGGCTATGCCACCGATCCTCACTATGCC                                                               <  SRR4302540.652671/85‑1 (MQ=60)

                               CCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCC                                                               >  SRR4302540.2814275/1‑94 (MQ=60)

                               CCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCC                                                               <  SRR4302540.652672/94‑1 (MQ=60)

                                 CGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCG                                                             >  SRR4302540.9273115/1‑94 (MQ=60)

                                 CGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGACCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCG                                                             >  SRR4302540.3602071/1‑94 (MQ=60)

                                  GCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGC                                                            <  SRR4302540.623660/94‑1 (MQ=60)

                                   CGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCA                                                           >  SRR4302540.2212552/1‑94 (MQ=60)

                                   CGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCA                                                           >  SRR4302540.3313400/1‑94 (MQ=60)

                                    CCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAA                                                          <  SRR4302540.27336/94‑1 (MQ=60)

                                      TACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAAC                                                        <  SRR4302540.4203330/94‑1 (MQ=60)

                                        CGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTC                                                      <  SRR4302540.9422211/94‑1 (MQ=60)

                                         GCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCA                                                     <  SRR4302540.3863543/94‑1 (MQ=60)

                                          CCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCAC                                                    <  SRR4302540.1250833/94‑1 (MQ=60)

                                           CGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACC                                                   <  SRR4302540.4031370/94‑1 (MQ=60)

                                            GCCGTGACGACCGCCGCGAGTGCGGAACGGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCA                                                  >  SRR4302540.1591612/1‑94 (MQ=60)

                                            GCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCA                                                  <  SRR4302540.2948182/94‑1 (MQ=60)

                                            GCCGCGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGGTCCTCACTATGCCCGCAAACTAACCA                                                  >  SRR4302540.3779536/1‑94 (MQ=60)

                                              CGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAAC                                                <  SRR4302540.909632/94‑1 (MQ=60)

                                               GTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACA                                               >  SRR4302540.7358778/1‑94 (MQ=60)

                                               GTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACA                                               >  SRR4302540.3717489/1‑94 (MQ=60)

                                                TGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACAT                                              <  SRR4302540.7953512/94‑1 (MQ=60)

                                                   CGACCGCCGCGAGTGCGGAACGGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGAT                                           <  SRR4302540.4978486/94‑1 (MQ=60)

                                                   CGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGAT                                           <  SRR4302540.1950693/94‑1 (MQ=60)

                                                   CGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGAT                                           <  SRR4302540.7806911/94‑1 (MQ=60)

                                                    GACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATT                                          >  SRR4302540.8065960/1‑94 (MQ=60)

                                                      CCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCA                                        <  SRR4302540.2626219/94‑1 (MQ=60)

                                                       CGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAG                                       <  SRR4302540.5443574/94‑1 (MQ=60)

                                                         CCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCA                                     >  SRR4302540.10022158/1‑94 (MQ=60)

                                                          CGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTacggag                                    >  SRR4302540.1129286/1‑88 (MQ=60)

                                                          CGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAG                                    >  SRR4302540.1129285/1‑94 (MQ=60)

                                                          CGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAG                                    >  SRR4302540.4054990/1‑94 (MQ=60)

                                                          CGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAG                                    >  SRR4302540.4054989/1‑94 (MQ=60)

                                                          CGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAG                                    <  SRR4302540.4777424/94‑1 (MQ=60)

                                                           GCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGA                                   <  SRR4302540.1242407/94‑1 (MQ=60)

                                                           GCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGA                                   <  SRR4302540.8498410/94‑1 (MQ=60)

                                                              AGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGA                                <  SRR4302540.4202407/94‑1 (MQ=60)

                                                              AGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGA                                >  SRR4302540.6198545/1‑94 (MQ=60)

                                                              AGTGCGGAACAGGGGGCGCAGGACCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGA                                >  SRR4302540.1605423/1‑94 (MQ=60)

                                                                TGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCTCCAACATGATTCAGCAGATGAAA                              <  SRR4302540.5471898/94‑1 (MQ=60)

                                                                 GCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAAT                             <  SRR4302540.8441549/94‑1 (MQ=60)

                                                                 GCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAAT                             >  SRR4302540.8846933/1‑94 (MQ=60)

                                                                 GCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAAT                             <  SRR4302540.506633/94‑1 (MQ=60)

                                                                  CGGAACGGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATC                            <  SRR4302540.701210/94‑1 (MQ=60)

                                                                  CGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATC                            <  SRR4302540.2030241/94‑1 (MQ=60)

                                                                  CGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATC                            <  SRR4302540.835084/94‑1 (MQ=60)

                                                                  CGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATC                            <  SRR4302540.7879117/94‑1 (MQ=60)

                                                                   GGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCG                           >  SRR4302540.8217313/1‑94 (MQ=60)

                                                                   GGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCG                           <  SRR4302540.9874208/94‑1 (MQ=60)

                                                                   GGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCG                           >  SRR4302540.2765105/1‑94 (MQ=60)

                                                                   GGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCG                           >  SRR4302540.2765106/1‑94 (MQ=60)

                                                                      ACGGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATA                        <  SRR4302540.8405529/94‑1 (MQ=60)

                                                                      ACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATA                        <  SRR4302540.5729394/94‑1 (MQ=60)

                                                                       CAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAA                       >  SRR4302540.5110011/1‑94 (MQ=60)

                                                                       CAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAA                       <  SRR4302540.750096/94‑1 (MQ=60)

                                                                       CAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAA                       <  SRR4302540.871259/94‑1 (MQ=60)

                                                                       CAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAA                       <  SRR4302540.8706822/94‑1 (MQ=60)

                                                                        AGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAG                      >  SRR4302540.1780674/1‑94 (MQ=60)

                                                                         GGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGC                     >  SRR4302540.1034347/1‑94 (MQ=60)

                                                                             GCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACA                 >  SRR4302540.6794409/1‑94 (MQ=60)

                                                                              CGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAA                <  SRR4302540.672636/94‑1 (MQ=60)

                                                                              CGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAA                >  SRR4302540.3087258/1‑94 (MQ=60)

                                                                               GCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAG               <  SRR4302540.835653/94‑1 (MQ=60)

                                                                               GCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAG               <  SRR4302540.10144467/94‑1 (MQ=60)

                                                                               GCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAG               <  SRR4302540.1973268/94‑1 (MQ=60)

                                                                               GCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAG               <  SRR4302540.3045071/94‑1 (MQ=60)

                                                                                CAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGG              >  SRR4302540.7950966/1‑94 (MQ=60)

                                                                                 AGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGT             <  SRR4302540.3638906/94‑1 (MQ=60)

                                                                                 AGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGT             <  SRR4302540.6618686/94‑1 (MQ=60)

                                                                                 AGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGG             >  SRR4302540.1116603/1‑94 (MQ=60)

                                                                                  GGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTG            <  SRR4302540.8370425/94‑1 (MQ=60)

                                                                                  GGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTG            >  SRR4302540.9182693/1‑94 (MQ=60)

                                                                                   GCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGA           <  SRR4302540.3175737/94‑1 (MQ=60)

                                                                                   GCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGA           <  SRR4302540.888608/94‑1 (MQ=60)

                                                                                     CCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGGCAAGGTGAGC         <  SRR4302540.9250001/94‑1 (MQ=60)

                                                                                      CTACAGGGGGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCGGCAGATGAAATCGATAAGCGACAAGGTGAGCA        <  SRR4302540.2873606/94‑1 (MQ=60)

                                                                                      CTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAAGTGAGCA        >  SRR4302540.2280973/1‑94 (MQ=60)

                                                                                       TACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAA       <  SRR4302540.438986/94‑1 (MQ=60)

                                                                                       TACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAA       >  SRR4302540.6291950/1‑94 (MQ=60)

                                                                                        ACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAACCTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAA      <  SRR4302540.7638798/94‑1 (MQ=60)

                                                                                         CAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAA     <  SRR4302540.2320270/94‑1 (MQ=60)

                                                                                         CAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAA     >  SRR4302540.9801611/1‑94 (MQ=60)

                                                                                          AGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAAC    >  SRR4302540.2834656/1‑94 (MQ=60)

                                                                                          AGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAAC    >  SRR4302540.114011/1‑94 (MQ=60)

                                                                                          AGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAAC    <  SRR4302540.198406/94‑1 (MQ=60)

                                                                                          AGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGAGACAAGGTGAGCAAAAC    >  SRR4302540.114012/1‑94 (MQ=60)

                                                                                            GGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCT  <  SRR4302540.1332897/94‑1 (MQ=60)

TGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCT  >  NC_000913/1137321‑1137506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`