Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,137,414 |
A→G |
D274G (GAC→GGC) |
flgJ → |
FlgJ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,137,414 | 0 | A | G | 99.5%
| 669.4
/ ‑4.8
| 214 | D274G (GAC→GGC) | flgJ | FlgJ |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (92/121); total (93/121) |
| Fisher's exact test for biased strand distribution p-value = 4.35e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.09e-01 |
Only 100 of 221 total aligned reads displayed.
CGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAA > NC_000913/1137324‑1137503
|
cGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGcg < 1:4480623/93‑1 (MQ=255)
ggATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGgcgc < 1:1076681/93‑1 (MQ=255)
gATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGcgcg > 2:5569972/1‑93 (MQ=255)
gATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGcgcg > 2:3140380/1‑93 (MQ=255)
aTTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCgg < 2:1805443/93‑1 (MQ=255)
aTTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCgg < 1:6307048/93‑1 (MQ=255)
tACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGc < 1:1005636/93‑1 (MQ=255)
ttGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATg > 2:1911761/1‑93 (MQ=255)
ttGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATg > 2:2188248/1‑93 (MQ=255)
tGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGc < 2:6151047/93‑1 (MQ=255)
tGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGc > 2:4431342/1‑93 (MQ=255)
tGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGc > 2:2354262/1‑93 (MQ=255)
gggCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGcc < 1:3931384/93‑1 (MQ=255)
ggCTGTTAACGCGTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCa < 2:6210710/93‑1 (MQ=255)
ggCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCa > 2:4215402/1‑93 (MQ=255)
ggCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCa > 1:3679381/1‑93 (MQ=255)
gCTGTTAACGCGTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCAc < 1:1204635/93‑1 (MQ=255)
cTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCAcc < 1:2953800/93‑1 (MQ=255)
cTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCAcc > 2:5515857/1‑93 (MQ=255)
cTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGACCTACAGGGCGCGGGCTATGACAcc > 2:1476062/1‑93 (MQ=255)
tGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCg > 2:5617421/1‑93 (MQ=255)
tAACGCGTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATc < 2:3263012/93‑1 (MQ=255)
actcgTACCCCGCGCTACGCCGCCGTGACGTCCGCCGCGAGTGCGGAACAGGGGGCCCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCt < 2:814678/90‑1 (MQ=255)
gcgTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCa < 1:4306923/93‑1 (MQ=255)
cgTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCAc < 1:1546683/93‑1 (MQ=255)
gTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACt < 2:259263/93‑1 (MQ=255)
gTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGGCCTACAGGGCGCGGGCTATGGCACCGATCCTCACt > 2:3355908/1‑93 (MQ=255)
gTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACt > 2:1222851/1‑93 (MQ=255)
taccccGCGCTCCGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGACCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTa < 2:2664526/90‑1 (MQ=255)
ccGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGcc > 2:1400001/1‑93 (MQ=255)
cgcgCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGccc > 1:2829451/1‑93 (MQ=255)
tACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCaaa < 2:5711978/93‑1 (MQ=255)
cgccgcCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACt < 1:5512985/93‑1 (MQ=255)
gccgccGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTc < 1:471159/93‑1 (MQ=255)
cgTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCaa > 2:4833638/1‑93 (MQ=255)
gTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAAc > 1:1225508/1‑93 (MQ=255)
tGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACa < 1:5265940/93‑1 (MQ=255)
tGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACa < 1:2729073/93‑1 (MQ=255)
acgacCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATg < 1:3460260/93‑1 (MQ=255)
cgacCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGa > 1:2488084/1‑93 (MQ=255)
gacCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGAt < 2:6107068/93‑1 (MQ=255)
acCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGAtt < 1:5802217/93‑1 (MQ=255)
ctgccgcGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGAGGGCTATGCCACCGATCCTCACTATGCCCGTAAACTCACCAACATGATTc < 2:1615582/91‑1 (MQ=255)
ccgccgCGAGTGCGGAACAGGGGGCTCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTc < 2:2782730/93‑1 (MQ=255)
ccgccgCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTc < 1:4343851/93‑1 (MQ=255)
cgccgcGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTca < 2:1010785/93‑1 (MQ=255)
cgccgcGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTca > 2:762394/1‑93 (MQ=255)
cgccgcGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTca < 1:1656380/93‑1 (MQ=255)
gccgcGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTcag > 2:3564334/1‑93 (MQ=255)
gccgcGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTcag > 1:2208160/1‑93 (MQ=255)
gcgAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTcagcag > 2:5163350/1‑93 (MQ=255)
gAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAt > 1:6222187/1‑93 (MQ=255)
gAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAt > 1:868517/1‑93 (MQ=255)
gAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAt < 1:375389/93‑1 (MQ=255)
gAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAt < 2:472535/93‑1 (MQ=255)
gAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAt < 2:4285510/93‑1 (MQ=255)
gTGCGGAACAGGGGGCGCAGGGCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGa > 2:5288303/1‑93 (MQ=255)
gTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGa > 2:3964781/1‑93 (MQ=255)
agCGGAACAGGGGGAGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGTCCGCATACTCAACAACATGATTTAGTACATGaa > 2:3081845/2‑93 (MQ=255)
gCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGaaa < 2:4345654/93‑1 (MQ=255)
cGGAACAGGGTGCGCAGGCCCTACAGGGCGCGGTCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAAt < 2:487809/93‑1 (MQ=255)
cGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAAt < 1:5619601/93‑1 (MQ=255)
cGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAAt < 1:3130498/93‑1 (MQ=255)
ggAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATc < 2:4131311/93‑1 (MQ=255)
gAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCg > 2:4961317/1‑93 (MQ=255)
aaCAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGa < 1:5896791/93‑1 (MQ=255)
aaCAGGGGGCGCAGGACCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGa > 1:974039/1‑93 (MQ=255)
aCAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAt > 1:2657255/1‑93 (MQ=255)
aCAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAt < 1:1937380/93‑1 (MQ=255)
aCAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAt > 1:2348553/1‑93 (MQ=255)
aCAGGGAGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAt < 2:5670226/93‑1 (MQ=255)
cAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATa < 1:4967443/93‑1 (MQ=255)
cAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATa < 2:5778306/93‑1 (MQ=255)
cAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATa > 2:1950944/1‑93 (MQ=255)
cAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATa < 1:3631623/93‑1 (MQ=255)
aGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATaa < 1:3567118/93‑1 (MQ=255)
aGGGCGCGCAGACCCTACGGGGCGCGGGCTATGCTGCAGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATaa < 2:5909395/93‑1 (MQ=255)
gggggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAg < 1:1645024/93‑1 (MQ=255)
ggggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGc < 1:2116196/93‑1 (MQ=255)
ggggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGc < 1:3223010/93‑1 (MQ=255)
gggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCg < 1:1786265/93‑1 (MQ=255)
gggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCg < 1:3107207/93‑1 (MQ=255)
gcgcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGAc < 1:5947460/93‑1 (MQ=255)
cgcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACa < 2:659831/93‑1 (MQ=255)
cgcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACa < 1:5520665/93‑1 (MQ=255)
gcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACaa < 2:4501376/93‑1 (MQ=255)
gcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACaa < 2:3694726/93‑1 (MQ=255)
gcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACaa < 2:6279235/93‑1 (MQ=255)
gcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACaa < 1:2576243/93‑1 (MQ=255)
cAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAg < 2:2911839/93‑1 (MQ=255)
cAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAg < 1:3964044/93‑1 (MQ=255)
aGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAgg < 2:867777/93‑1 (MQ=255)
aGGCCCTACAGGGCGCGGCCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAgg < 2:2854319/93‑1 (MQ=255)
gCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTg < 1:2463999/93‑1 (MQ=255)
cccTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGa < 2:4016703/93‑1 (MQ=255)
cccTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGa > 1:1137038/1‑93 (MQ=255)
tACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCa > 2:5079743/1‑93 (MQ=255)
tACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCa < 2:6204968/93‑1 (MQ=255)
tACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCa > 1:4272210/1‑93 (MQ=255)
aCAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCaa < 2:1123628/93‑1 (MQ=255)
|
CGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAA > NC_000913/1137324‑1137503
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTA > NC_000913/1137321‑1137507
|
TGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGG > SRR4302533.6072146/1‑94 (MQ=60)
TCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCG < SRR4302533.3015774/94‑1 (MQ=60)
TCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCG < SRR4302533.1547061/94‑1 (MQ=60)
CGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGC < SRR4302533.4507729/94‑1 (MQ=60)
GGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCG < SRR4302533.1083029/94‑1 (MQ=60)
GATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGG < SRR4302533.308427/94‑1 (MQ=60)
ATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGG < SRR4302533.6344846/94‑1 (MQ=60)
TACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCT < SRR4302533.1011518/94‑1 (MQ=60)
CGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTAT < SRR4302533.3180381/94‑1 (MQ=60)
TGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCC < SRR4302533.1161057/94‑1 (MQ=60)
GGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCA > SRR4302533.3701997/1‑94 (MQ=60)
GGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCA < SRR4302533.3955384/94‑1 (MQ=60)
GCTGTTAACGCGTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACC < SRR4302533.1211874/94‑1 (MQ=60)
CTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCG > SRR4302533.3656773/1‑94 (MQ=60)
CTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCG < SRR4302533.2971865/94‑1 (MQ=60)
TTAACGCGTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATC < SRR4302533.3315666/94‑1 (MQ=60)
AACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCT > SRR4302533.4367079/1‑94 (MQ=60)
GCGTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCAC < SRR4302533.4332843/94‑1 (MQ=60)
GCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCAC > SRR4302533.5650864/1‑94 (MQ=60)
CGTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACT < SRR4302533.1556004/94‑1 (MQ=60)
CGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACT < SRR4302533.5374607/94‑1 (MQ=60)
CGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACT < SRR4302533.1870595/94‑1 (MQ=60)
GTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTA > SRR4302533.165607/1‑94 (MQ=60)
TACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTAT < SRR4302533.3726693/94‑1 (MQ=60)
AACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATG < SRR4302533.6114833/94‑1 (MQ=60)
ACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGC > SRR4302533.5662215/1‑94 (MQ=60)
CCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCC > SRR4302533.2846861/1‑94 (MQ=60)
ccgcCCGCCGTGCCGACCGTCGCTATTGCGGAACAGGGGTCGCAGGCGCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAAC < SRR4302533.5652916/90‑1 (MQ=60)
TACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAAC < SRR4302533.2589826/94‑1 (MQ=60)
CGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTC < SRR4302533.2793981/94‑1 (MQ=60)
CGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTC < SRR4302533.5546264/94‑1 (MQ=60)
GCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCA > SRR4302533.178152/1‑94 (MQ=60)
GCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCA < SRR4302533.473978/94‑1 (MQ=60)
CGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACC < SRR4302533.1999289/94‑1 (MQ=60)
CGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACC > SRR4302533.2497382/1‑94 (MQ=60)
CGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAAC > SRR4302533.6315493/1‑94 (MQ=60)
CGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAAC > SRR4302533.1232852/1‑94 (MQ=60)
TGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACAT < SRR4302533.2745813/94‑1 (MQ=60)
TGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACAT < SRR4302533.4555893/94‑1 (MQ=60)
TGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACAT < SRR4302533.5297540/94‑1 (MQ=60)
GACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATG < SRR4302533.5838453/94‑1 (MQ=60)
ACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGA > SRR4302533.2503408/1‑94 (MQ=60)
ACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGA < SRR4302533.3481619/94‑1 (MQ=60)
CGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGAT > SRR4302533.3008741/1‑94 (MQ=60)
CGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGAT > SRR4302533.2911167/1‑94 (MQ=60)
CGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGAT < SRR4302533.2513286/94‑1 (MQ=60)
ACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTC < SRR4302533.5938006/94‑1 (MQ=60)
ACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTC < SRR4302533.5837266/94‑1 (MQ=60)
CCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCA < SRR4302533.3574113/94‑1 (MQ=60)
CCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCA < SRR4302533.398798/94‑1 (MQ=60)
CCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCA < SRR4302533.4370029/94‑1 (MQ=60)
CGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAG < SRR4302533.1666404/94‑1 (MQ=60)
CGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAG > SRR4302533.4779475/1‑94 (MQ=60)
CGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAG > SRR4302533.2221780/1‑94 (MQ=60)
GCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGC > SRR4302533.1111859/1‑94 (MQ=60)
CGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAG > SRR4302533.521089/1‑94 (MQ=60)
CGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAG > SRR4302533.1408921/1‑94 (MQ=60)
CGAGTGCGGAACAGGGGGCGCAGGTCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAT > SRR4302533.938391/1‑94 (MQ=60)
CGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAT > SRR4302533.6259480/1‑94 (MQ=60)
CGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAT > SRR4302533.6155818/1‑94 (MQ=60)
CGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAT > SRR4302533.873611/1‑94 (MQ=60)
CGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAT < SRR4302533.2456532/94‑1 (MQ=60)
CGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAT > SRR4302533.2174203/1‑94 (MQ=60)
GAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATG < SRR4302533.377653/94‑1 (MQ=60)
GTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAA > SRR4302533.3640534/1‑94 (MQ=60)
TGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAA > SRR4302533.4518487/1‑94 (MQ=60)
TGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAA > SRR4302533.1041586/1‑94 (MQ=60)
CGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATC < SRR4302533.3149746/94‑1 (MQ=60)
CGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATC < SRR4302533.5653566/94‑1 (MQ=60)
GGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCG > SRR4302533.3543389/1‑94 (MQ=60)
GGAACAGGGGGCGCAGGCCCGACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCG < SRR4302533.4330302/94‑1 (MQ=60)
GAACAGGGGGCGCAGGACCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGA > SRR4302533.979758/1‑94 (MQ=60)
AACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAT > SRR4302533.786508/1‑94 (MQ=60)
AACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAT < SRR4302533.5932399/94‑1 (MQ=60)
AACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAT > SRR4302533.2363085/1‑94 (MQ=60)
AACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAT > SRR4302533.2673581/1‑94 (MQ=60)
ACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATA < SRR4302533.1949194/94‑1 (MQ=60)
GAGGGGGCGCAGGCCCTACAGGGCGCGGGGTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATGCAGCAGATGAAATCGATAA < SRR4302533.393531/94‑1 (MQ=60)
CAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAA < SRR4302533.3961865/94‑1 (MQ=60)
CAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAA < SRR4302533.3653966/94‑1 (MQ=60)
CAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAA < SRR4302533.1953143/94‑1 (MQ=60)
CAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAA < SRR4302533.4997561/94‑1 (MQ=60)
AGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAG < SRR4302533.5578574/94‑1 (MQ=60)
AGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAG > SRR4302533.4490639/1‑94 (MQ=60)
AGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAG < SRR4302533.3589101/94‑1 (MQ=60)
GGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGC < SRR4302533.1654985/94‑1 (MQ=60)
GGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCG < SRR4302533.2129248/94‑1 (MQ=60)
GGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCG < SRR4302533.3242886/94‑1 (MQ=60)
GGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCG > SRR4302533.4115581/1‑94 (MQ=60)
GGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGA < SRR4302533.3126305/94‑1 (MQ=60)
GGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGA < SRR4302533.1797125/94‑1 (MQ=60)
GGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGAC < SRR4302533.1230243/94‑1 (MQ=60)
GCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACA < SRR4302533.5983433/94‑1 (MQ=60)
CGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAA < SRR4302533.5553996/94‑1 (MQ=60)
CGCAGGCCCTACAGGGCGAGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAA < SRR4302533.1400466/94‑1 (MQ=60)
GCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAG < SRR4302533.2592092/94‑1 (MQ=60)
GCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAG < SRR4302533.2628114/94‑1 (MQ=60)
CAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGG > SRR4302533.5547663/1‑94 (MQ=60)
CAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGG < SRR4302533.3988192/94‑1 (MQ=60)
GGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTG < SRR4302533.3139108/94‑1 (MQ=60)
GGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTG < SRR4302533.1566530/94‑1 (MQ=60)
GCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGA < SRR4302533.2479198/94‑1 (MQ=60)
GCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGA < SRR4302533.2303148/94‑1 (MQ=60)
GCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGA > SRR4302533.1143800/1‑94 (MQ=60)
CTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCA > SRR4302533.4297923/1‑94 (MQ=60)
CAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAA > SRR4302533.2729291/1‑94 (MQ=60)
AGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAAC > SRR4302533.796050/1‑94 (MQ=60)
GCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTA > SRR4302533.4754631/1‑94 (MQ=60)
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TGTCGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAAACCTA > NC_000913/1137321‑1137507
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
