Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,168,777	A→G	L274P (CTG→CCG)	ycfS ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,168,777	0	A	G	100.0%	784.2 / NA	240	L274P (CTG→CCG)	ycfS	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (116/124); total (116/124)

Only 100 of 260 total aligned reads displayed.

GAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCAGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATC  >  NC_000913/1168687‑1168866

 gaCGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGgcggca                                                                                        <  1:4269488/92‑1 (MQ=255)

 aaCGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGgcggca                                                                                        >  2:6436839/1‑93 (MQ=255)

 aaCGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGgcggca                                                                                        >  1:3179001/1‑93 (MQ=255)

  aCGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGcggcag                                                                                       >  1:1268181/1‑93 (MQ=255)

  aCGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGcggcag                                                                                       >  1:3664643/1‑93 (MQ=255)

   cGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCggcagc                                                                                      <  1:7286237/93‑1 (MQ=255)

   cGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCggcagc                                                                                      <  1:7064759/93‑1 (MQ=255)

    ggACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCt                                                                                     >  1:1898192/1‑93 (MQ=255)

     gACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTg                                                                                    <  2:5737125/93‑1 (MQ=255)

       catccatcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCg                                                                                  >  1:4570902/1‑93 (MQ=255)

        atccatcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCgg                                                                                 >  2:8688423/1‑93 (MQ=255)

         tccatcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGa                                                                                <  2:3339262/93‑1 (MQ=255)

         tccatcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGa                                                                                >  1:6462193/1‑93 (MQ=255)

          ccatcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGAt                                                                               <  1:4885270/93‑1 (MQ=255)

           catcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATc                                                                              >  2:4177351/1‑93 (MQ=255)

           catcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATc                                                                              <  1:6633679/93‑1 (MQ=255)

             tcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGt                                                                            >  1:7147294/1‑93 (MQ=255)

               acaTGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGtca                                                                          >  1:3214709/1‑93 (MQ=255)

                 aTGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGtcatc                                                                        <  2:5543367/93‑1 (MQ=255)

                 aTGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGtcatc                                                                        >  1:9576716/1‑93 (MQ=255)

                  tGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGtcatca                                                                       >  2:10036937/1‑93 (MQ=255)

                   gTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCaa                                                                      <  1:4009734/93‑1 (MQ=255)

                   gTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCaa                                                                      <  2:6696145/93‑1 (MQ=255)

                    ttGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAt                                                                     >  2:4756910/1‑93 (MQ=255)

                     tGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAtc                                                                    <  1:9454622/93‑1 (MQ=255)

                     tGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAtc                                                                    <  1:614675/93‑1 (MQ=255)

                     tGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAtc                                                                    <  2:8544922/93‑1 (MQ=255)

                        aTCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAtcttc                                                                 <  1:5054402/93‑1 (MQ=255)

                        aTCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAtcttc                                                                 >  1:7866494/1‑93 (MQ=255)

                         tCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAtcttct                                                                <  1:6720013/93‑1 (MQ=255)

                         tCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAtcttct                                                                >  1:6537895/1‑93 (MQ=255)

                          cACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTtctc                                                               <  2:9183399/93‑1 (MQ=255)

                           aCTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTctct                                                              >  2:4648856/1‑93 (MQ=255)

                           aCTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTctct                                                              <  2:3683698/93‑1 (MQ=255)

                            cTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTg                                                             >  2:4590032/1‑93 (MQ=255)

                              tCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGAc                                                           >  2:3831577/1‑93 (MQ=255)

                               cAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACa                                                          <  2:1851246/93‑1 (MQ=255)

                                aGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAg                                                         <  1:2819346/93‑1 (MQ=255)

                                 gCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGc                                                        >  1:866385/1‑93 (MQ=255)

                                 gCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGc                                                        <  2:6809624/93‑1 (MQ=255)

                                 gCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGc                                                        >  2:1402306/1‑93 (MQ=255)

                                   gTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGCCAGCgg                                                      >  1:7740479/1‑93 (MQ=255)

                                   gTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACCGCgg                                                      >  1:5307439/1‑93 (MQ=255)

                                   gTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCgg                                                      <  2:4243231/93‑1 (MQ=255)

                                   gTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCgg                                                      >  1:5797679/1‑93 (MQ=255)

                                    tCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGc                                                     >  2:1588985/1‑93 (MQ=255)

                                    tCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGc                                                     >  2:8840960/1‑93 (MQ=255)

                                     cAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCt                                                    <  1:3055195/93‑1 (MQ=255)

                                      aGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTg                                                   >  2:7638314/1‑93 (MQ=255)

                                      aGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTg                                                   >  1:8234795/1‑93 (MQ=255)

                                      aGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTg                                                   >  2:2039682/1‑93 (MQ=255)

                                      aGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTg                                                   >  1:2176326/1‑93 (MQ=255)

                                       gTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGa                                                  <  2:3465426/93‑1 (MQ=255)

                                       gTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGa                                                  >  2:3444054/1‑93 (MQ=255)

                                       gTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGa                                                  <  2:1299212/93‑1 (MQ=255)

                                       gTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGa                                                  >  2:6573351/1‑93 (MQ=255)

                                       gTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGa                                                  >  2:8132420/1‑93 (MQ=255)

                                       gTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGa                                                  >  2:9696228/1‑93 (MQ=255)

                                         ttGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATg                                                >  1:9197098/1‑93 (MQ=255)

                                          tgtgCTGCATCTTTAAATGATTGTATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGt                                               >  1:5462487/1‑93 (MQ=255)

                                          tgtgCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGt                                               <  1:3834637/93‑1 (MQ=255)

                                             gctgcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACt                                            >  1:7245452/1‑93 (MQ=255)

                                               tgcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTc                                          >  2:8370822/1‑93 (MQ=255)

                                               tgcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTc                                          <  1:2356535/93‑1 (MQ=255)

                                                  aTCTTTAAATGATTGCATTGCGCCATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAAc                                       >  1:5250919/1‑93 (MQ=255)

                                                   tCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAAcc                                      >  2:9406933/1‑93 (MQ=255)

                                                   tCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAAcc                                      >  2:2531161/1‑93 (MQ=255)

                                                   tCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAAcc                                      <  1:8961891/93‑1 (MQ=255)

                                                    cTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCa                                     <  2:2091275/93‑1 (MQ=255)

                                                    cTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCa                                     <  1:1511356/93‑1 (MQ=255)

                                                     tttAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCaa                                    >  1:7946865/1‑92 (MQ=255)

                                                     tttAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAg                                    >  2:8464281/1‑93 (MQ=255)

                                                     tttAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAg                                    >  1:9637451/1‑93 (MQ=255)

                                                        aaaTGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGAcg                                 >  1:143428/1‑93 (MQ=255)

                                                        aaaTGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGAcg                                 >  1:4512206/1‑93 (MQ=255)

                                                           tGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACgcgc                              >  2:4471179/1‑93 (MQ=255)

                                                              ttgcattgcGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCAcc                           <  1:1774444/93‑1 (MQ=255)

                                                                 cattgcGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGtt                        <  2:585343/93‑1 (MQ=255)

                                                                    tgcGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTgg                     <  1:734490/93‑1 (MQ=255)

                                                                     gcgcTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGt                    <  2:3145425/93‑1 (MQ=255)

                                                                      cgcTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGtt                   <  1:8587222/93‑1 (MQ=255)

                                                                      cgcTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGtt                   <  1:5575963/93‑1 (MQ=255)

                                                                        cTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCg                 <  2:895877/93‑1 (MQ=255)

                                                                         tATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCgg                >  2:6335657/1‑93 (MQ=255)

                                                                         tATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCgg                >  1:837307/1‑93 (MQ=255)

                                                                         tATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGGTCgg                >  1:284871/1‑93 (MQ=255)

                                                                          aTTCAGCGTAATTGGCGGCAGCTGCGAATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGc               <  2:511200/93‑1 (MQ=255)

                                                                           ttCAGCGTAATTGGCGGCAGCTGCGGATCGTTATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCa              <  1:10032093/93‑1 (MQ=255)

                                                                           ttCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCa              >  2:7598533/1‑93 (MQ=255)

                                                                             cAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCaga            <  2:7196519/93‑1 (MQ=255)

                                                                              aGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCcgag           >  2:1764031/1‑93 (MQ=255)

                                                                               gCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAgaga          <  1:1993972/93‑1 (MQ=255)

                                                                                cGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGAc         <  1:7480288/93‑1 (MQ=255)

                                                                                 gTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACt        <  2:7796060/93‑1 (MQ=255)

                                                                                 gTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGGTTGGTTCGGCAGAGACt        >  2:7740599/1‑93 (MQ=255)

                                                                                  tAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACtt       >  1:2507075/1‑93 (MQ=255)

                                                                                  tAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACtt       >  2:8901427/1‑93 (MQ=255)

                                                                                   aaTTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACttt      <  1:406756/93‑1 (MQ=255)

                                                                                       ggcggcAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATc  <  2:2728869/93‑1 (MQ=255)

                                                                                       ggcggcAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATc  >  2:3026615/1‑93 (MQ=255)

GAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCAGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATC  >  NC_000913/1168687‑1168866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCAGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGGAG  >  NC_000913/1168684‑1168870

CCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCG                                                                                               <  SRR4302540.4318257/94‑1 (MQ=60)

 CGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGG                                                                                              >  SRR4302540.8305199/1‑94 (MQ=60)

 CGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGG                                                                                              >  SRR4302540.8305200/1‑94 (MQ=60)

  GGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGC                                                                                             >  SRR4302540.2283388/1‑94 (MQ=60)

  GGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGC                                                                                             <  SRR4302540.2431054/94‑1 (MQ=60)

  GGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGC                                                                                             <  SRR4302540.4928739/94‑1 (MQ=60)

   GAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCA                                                                                            >  SRR4302540.3213543/1‑94 (MQ=60)

    GACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAG                                                                                           <  SRR4302540.4315926/94‑1 (MQ=60)

    AACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAG                                                                                           >  SRR4302540.3704752/1‑94 (MQ=60)

    AACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAG                                                                                           >  SRR4302540.1281222/1‑94 (MQ=60)

      CGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCT                                                                                         <  SRR4302540.7143331/94‑1 (MQ=60)

      CGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCT                                                                                         <  SRR4302540.7367540/94‑1 (MQ=60)

      CGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCT                                                                                         >  SRR4302540.7447432/1‑94 (MQ=60)

      CGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCT                                                                                         <  SRR4302540.2697948/94‑1 (MQ=60)

      CGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCT                                                                                         >  SRR4302540.1918962/1‑94 (MQ=60)

      CGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCT                                                                                         <  SRR4302540.556157/94‑1 (MQ=60)

        GACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGC                                                                                       <  SRR4302540.928877/94‑1 (MQ=60)

         ACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCG                                                                                      <  SRR4302540.7454176/94‑1 (MQ=60)

         ACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCG                                                                                      >  SRR4302540.4620240/1‑94 (MQ=60)

           ATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGA                                                                                    <  SRR4302540.9910050/94‑1 (MQ=60)

           ATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGA                                                                                    >  SRR4302540.6534113/1‑94 (MQ=60)

             CCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATC                                                                                  <  SRR4302540.4937749/94‑1 (MQ=60)

             CCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATC                                                                                  <  SRR4302540.735030/94‑1 (MQ=60)

              CATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCG                                                                                 <  SRR4302540.5983632/94‑1 (MQ=60)

              CATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCG                                                                                 <  SRR4302540.6707096/94‑1 (MQ=60)

               ATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGT                                                                                >  SRR4302540.943607/1‑94 (MQ=60)

               ATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGT                                                                                >  SRR4302540.7226940/1‑94 (MQ=60)

                 CACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCA                                                                              >  SRR4302540.3249618/1‑94 (MQ=60)

                 CACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGAAGCTGCGGATCGTCA                                                                              >  SRR4302540.2424649/1‑94 (MQ=60)

                   CATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATC                                                                            <  SRR4302540.5186959/94‑1 (MQ=60)

                   CATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATC                                                                            >  SRR4302540.9689820/1‑94 (MQ=60)

                   CATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATC                                                                            <  SRR4302540.6504601/94‑1 (MQ=60)

                    ATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCA                                                                           >  SRR4302540.6023868/1‑94 (MQ=60)

                      GTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAT                                                                         <  SRR4302540.8613677/94‑1 (MQ=60)

                      GTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAT                                                                         <  SRR4302540.4052913/94‑1 (MQ=60)

                      GTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAT                                                                         <  SRR4302540.4052912/94‑1 (MQ=60)

                        TGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCT                                                                       <  SRR4302540.9566833/94‑1 (MQ=60)

                        TGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCT                                                                       <  SRR4302540.621235/94‑1 (MQ=60)

                        TGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCT                                                                       <  SRR4302540.7983829/94‑1 (MQ=60)

                          CATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTC                                                                     >  SRR4302540.7958392/1‑94 (MQ=60)

                          CATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTC                                                                     <  SRR4302540.1891620/94‑1 (MQ=60)

                           ATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCT                                                                    >  SRR4302540.3963528/1‑94 (MQ=60)

                           ATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCT                                                                    >  SRR4302540.6610450/1‑94 (MQ=60)

                           ATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCT                                                                    >  SRR4302540.7409348/1‑94 (MQ=60)

                           ATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCT                                                                    <  SRR4302540.5109038/94‑1 (MQ=60)

                            TCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTC                                                                   <  SRR4302540.6794171/94‑1 (MQ=60)

                            TCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTC                                                                   >  SRR4302540.432295/1‑94 (MQ=60)

                             CACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCT                                                                  <  SRR4302540.7769233/94‑1 (MQ=60)

                              anntnnncnncagtttnngnnnnnnntnnanATGANTGCANTNCNCTATTNAGCNTAANTGGCGNCAGCTGCGGATCGTCATCAATCTTCTCTG                                                                 <  SRR4302540.374957/63‑1 (MQ=55)

                              ACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTG                                                                 <  SRR4302540.3223725/94‑1 (MQ=60)

                                TTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGAC                                                               >  SRR4302540.6769625/1‑94 (MQ=60)

                                TTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGAC                                                               <  SRR4302540.9573549/94‑1 (MQ=60)

                                 TCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACA                                                              <  SRR4302540.2142707/94‑1 (MQ=60)

                                 TCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACA                                                              <  SRR4302540.7858222/94‑1 (MQ=60)

                                   AGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGC                                                            >  SRR4302540.875584/1‑94 (MQ=60)

                                   AGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGC                                                            <  SRR4302540.1636192/94‑1 (MQ=60)

                                   AGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGC                                                            <  SRR4302540.2849797/94‑1 (MQ=60)

                                     CGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGCCAGCGG                                                          >  SRR4302540.7830849/1‑94 (MQ=60)

                                     CGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACCGCGG                                                          >  SRR4302540.5365523/1‑94 (MQ=60)

                                     CGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGG                                                          >  SRR4302540.5861744/1‑94 (MQ=60)

                                     CGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGG                                                          >  SRR4302540.5365522/1‑94 (MQ=60)

                                     CGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGG                                                          >  SRR4302540.4236781/1‑94 (MQ=60)

                                     CGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGG                                                          >  SRR4302540.7830848/1‑94 (MQ=60)

                                      GTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGC                                                         <  SRR4302540.4642657/94‑1 (MQ=60)

                                      GTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGC                                                         >  SRR4302540.6599785/1‑94 (MQ=60)

                                       TCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCT                                                        <  SRR4302540.8192114/94‑1 (MQ=60)

                                        CAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTG                                                       <  SRR4302540.3088717/94‑1 (MQ=60)

                                        CAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTG                                                       >  SRR4302540.2199796/1‑94 (MQ=60)

                                        CAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTG                                                       >  SRR4302540.8330512/1‑94 (MQ=60)

                                          GTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGAT                                                     >  SRR4302540.5524704/1‑94 (MQ=60)

                                          GTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGAT                                                     <  SRR4302540.5366320/94‑1 (MQ=60)

                                           TTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATG                                                    <  SRR4302540.1430336/94‑1 (MQ=60)

                                           TTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATG                                                    >  SRR4302540.9307423/1‑94 (MQ=60)

                                            TTGTGCTGCATCTTTAAATGATTGTATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGT                                                   >  SRR4302540.5522615/1‑94 (MQ=60)

                                            TTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGT                                                   <  SRR4302540.360779/94‑1 (MQ=60)

                                            TTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGT                                                   >  SRR4302540.8781956/1‑94 (MQ=60)

                                             TGTGCTGCCTCTGTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTA                                                  <  SRR4302540.8397334/94‑1 (MQ=60)

                                             TGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTA                                                  <  SRR4302540.8397337/94‑1 (MQ=60)

                                             TGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTA                                                  <  SRR4302540.3876362/94‑1 (MQ=60)

                                              GTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTAC                                                 >  SRR4302540.5060510/1‑94 (MQ=60)

                                               TGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACT                                                >  SRR4302540.7326288/1‑94 (MQ=60)

                                                  TGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCA                                             <  SRR4302540.2381918/94‑1 (MQ=60)

                                                  TGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTAATTCA                                             >  SRR4302540.7299017/1‑94 (MQ=60)

                                                  TGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCGTCTCTGACAGCGGCTGATGTTCTTCA                                             >  SRR4302540.6621889/1‑94 (MQ=60)

                                                   GCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAA                                            >  SRR4302540.679696/1‑94 (MQ=60)

                                                    CATCTTTAAATGATTGCATTGCGCCATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAAC                                           >  SRR4302540.5308198/1‑94 (MQ=60)

                                                     ATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACC                                          <  SRR4302540.4313311/94‑1 (MQ=60)

                                                     ATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACC                                          >  SRR4302540.9699889/1‑94 (MQ=60)

                                                      TCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCA                                         <  SRR4302540.9067952/94‑1 (MQ=60)

                                                       CTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAG                                        >  SRR4302540.7209860/1‑94 (MQ=60)

                                                       CTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAG                                        <  SRR4302540.1528055/94‑1 (MQ=60)

                                                       CTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAG                                        <  SRR4302540.1528056/94‑1 (MQ=60)

                                                       CTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAG                                        >  SRR4302540.9750988/1‑94 (MQ=60)

                                                       CTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAG                                        <  SRR4302540.3227330/94‑1 (MQ=60)

                                                       CTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAA                                        >  SRR4302540.8039499/1‑94 (MQ=60)

                                                         TTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGAC                                      <  SRR4302540.5244828/94‑1 (MQ=60)

                                                          TAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACG                                     >  SRR4302540.4561096/1‑94 (MQ=60)

                                                          TAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACG                                     >  SRR4302540.144923/1‑94 (MQ=60)

                                                          TAAAGGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACG                                     <  SRR4302540.6522519/94‑1 (MQ=60)

                                                            AATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCG                                   >  SRR4302540.3894555/1‑94 (MQ=60)

                                                            AATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCG                                   >  SRR4302540.9671026/1‑94 (MQ=60)

                                                              TGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCA                                 >  SRR4302540.2852226/1‑94 (MQ=60)

                                                               GATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCAC                                >  SRR4302540.1501015/1‑94 (MQ=60)

                                                               GATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCAC                                >  SRR4302540.5859815/1‑94 (MQ=60)

                                                                ATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACC                               <  SRR4302540.6865546/94‑1 (MQ=60)

                                                                ATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACC                               >  SRR4302540.9519591/1‑94 (MQ=60)

                                                                 TTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCG                              <  SRR4302540.1793713/94‑1 (MQ=60)

                                                                 TTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCG                              <  SRR4302540.1793712/94‑1 (MQ=60)

                                                                  TGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGT                             <  SRR4302540.981135/94‑1 (MQ=60)

                                                                   GCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTT                            <  SRR4302540.8534387/94‑1 (MQ=60)

                                                                      TTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGG                         >  SRR4302540.3070663/1‑94 (MQ=60)

                                                                       TGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGT                        <  SRR4302540.742342/94‑1 (MQ=60)

                                                                        GCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGTGGCTGGTGTACTTGAACACGACGCGCACCGTTTGGgc                       >  SRR4302540.2940249/1‑92 (MQ=60)

                                                                         CGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTC                      <  SRR4302540.2007585/94‑1 (MQ=60)

                                                                         CGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTC                      <  SRR4302540.8914883/94‑1 (MQ=60)

                                                                         CGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTC                      <  SRR4302540.8687048/94‑1 (MQ=60)

                                                                         CGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTC                      >  SRR4302540.1241251/1‑94 (MQ=60)

                                                                         CGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTC                      <  SRR4302540.5637352/94‑1 (MQ=60)

                                                                          GCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCG                     >  SRR4302540.3198228/1‑94 (MQ=60)

                                                                          GCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCG                     >  SRR4302540.7344558/1‑94 (MQ=60)

                                                                           CTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGG                    >  SRR4302540.846198/1‑94 (MQ=60)

                                                                           CTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGGTCGG                    >  SRR4302540.287675/1‑94 (MQ=60)

                                                                            TATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGC                   >  SRR4302540.8759274/1‑94 (MQ=60)

                                                                            TATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGC                   >  SRR4302540.4869418/1‑94 (MQ=60)

                                                                             ATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCA                  <  SRR4302540.4572106/94‑1 (MQ=60)

                                                                              TTCAGCGTAATTGGCGGCAGCTGCGGATCGTTATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAG                 <  SRR4302540.10148788/94‑1 (MQ=60)

                                                                              TTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTAACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAG                 <  SRR4302540.2577237/94‑1 (MQ=60)

                                                                                CAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAG               <  SRR4302540.2071893/94‑1 (MQ=60)

                                                                                CAGCGTAATTGGCGGCAGCTGCGGATCGGTATCAATCTTCTCTGACAGCGGCTGATGTACGTCAACAAGACGCGCACCGTTTGGTTCGGCAGAG               >  SRR4302540.571908/1‑94 (MQ=60)

                                                                                 AGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGA              >  SRR4302540.6639372/1‑94 (MQ=60)

                                                                                 AGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGA              >  SRR4302540.336101/1‑94 (MQ=60)

                                                                                  GCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGAC             <  SRR4302540.2015584/94‑1 (MQ=60)

                                                                                   CGTAATTGGCGGCAGGTGCGGATCGTCATCATTCTACTCTGACAGCGGCTGATCTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACT            <  SRR4302540.7563776/94‑1 (MQ=60)

                                                                                   CGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACT            <  SRR4302540.7563775/94‑1 (MQ=60)

                                                                                   CGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACT            <  SRR4302540.8022950/94‑1 (MQ=60)

                                                                                    GTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTT           >  SRR4302540.303832/1‑94 (MQ=60)

                                                                                    GTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTT           >  SRR4302540.7169120/1‑94 (MQ=60)

                                                                                    GTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTT           >  SRR4302540.2534150/1‑94 (MQ=60)

                                                                                     TAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTT          <  SRR4302540.5337685/94‑1 (MQ=60)

                                                                                      AATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTT         >  SRR4302540.2431615/1‑94 (MQ=60)

                                                                                      AATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTT         <  SRR4302540.411010/94‑1 (MQ=60)

                                                                                       ATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTA        >  SRR4302540.1361788/1‑94 (MQ=60)

                                                                                        TTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTAT       <  SRR4302540.3769895/94‑1 (MQ=60)

                                                                                         TGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATC      <  SRR4302540.4412370/94‑1 (MQ=60)

                                                                                             GGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGGAG  >  SRR4302540.100573/1‑94 (MQ=60)

                                                                                             GGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGGAG  >  SRR4302540.1635333/1‑94 (MQ=60)

CCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCAGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGGAG  >  NC_000913/1168684‑1168870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`