Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,168,777 |
A→G |
L274P (CTG→CCG) |
ycfS ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,168,777 | 0 | A | G | 100.0%
| 687.0
/ NA
| 212 | L274P (CTG→CCG) | ycfS | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (118/94); total (118/94) |
Only 100 of 229 total aligned reads displayed.
GAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCAGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATC > NC_000913/1168687‑1168866
|
gAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTggcggc > 2:5500686/1‑93 (MQ=255)
aaCGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGgcggca > 1:4467010/1‑93 (MQ=255)
aCGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGcggcag > 2:1494428/1‑93 (MQ=255)
cGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCggcagc < 2:4107300/93‑1 (MQ=255)
catccatcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCg > 1:5088537/1‑93 (MQ=255)
atccatcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCgg < 2:4279990/93‑1 (MQ=255)
atccatcACATGTTGCATCACTTCAGCGTCAGTGTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCgg > 1:901125/1‑93 (MQ=255)
tccatcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGa < 1:2446455/93‑1 (MQ=255)
tccatcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGa < 2:1434873/93‑1 (MQ=255)
ccatcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGAt < 2:1366002/93‑1 (MQ=255)
atcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCg < 1:1880884/93‑1 (MQ=255)
atcACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCg < 2:6264884/93‑1 (MQ=255)
cacaTGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGtc > 1:2613818/1‑93 (MQ=255)
acaTGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGtca > 1:4784527/1‑93 (MQ=255)
aTGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGtcatc > 1:1491073/1‑93 (MQ=255)
tGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGtcatca > 2:4715506/1‑93 (MQ=255)
ttGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAt < 1:6089074/93‑1 (MQ=255)
ttGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAt < 2:5271739/93‑1 (MQ=255)
ttGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAt > 2:4426447/1‑93 (MQ=255)
aTCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAAtcttc > 1:3242820/1‑93 (MQ=255)
cTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTg > 2:3042529/1‑93 (MQ=255)
ttCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGa < 2:691337/93‑1 (MQ=255)
tCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGAc > 1:2102008/1‑93 (MQ=255)
cAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACa > 2:1841787/1‑93 (MQ=255)
cAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACa < 2:4974875/93‑1 (MQ=255)
aGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAg < 2:2024774/93‑1 (MQ=255)
aGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAg < 2:3686594/93‑1 (MQ=255)
aGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAg > 1:2877112/1‑93 (MQ=255)
gCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGc < 2:6073204/93‑1 (MQ=255)
gCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGc > 2:2945798/1‑93 (MQ=255)
gCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGc < 1:1450535/93‑1 (MQ=255)
gCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGc < 1:5886693/93‑1 (MQ=255)
gTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTCGCGGCAGCTGCGGATCGTCATCACTCTTCTCTTACAGCgg > 2:937735/1‑93 (MQ=255)
tCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGc > 2:2224258/1‑93 (MQ=255)
cAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCt < 2:2477106/93‑1 (MQ=255)
gTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGa < 2:2099873/93‑1 (MQ=255)
ttGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATg < 1:5589344/93‑1 (MQ=255)
tgtgCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGt < 2:5298512/93‑1 (MQ=255)
tgtgCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGt > 1:2355483/1‑93 (MQ=255)
tgtgCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGt < 2:3365975/93‑1 (MQ=255)
gtgCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTa < 1:4701023/93‑1 (MQ=255)
gctgcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGGTGTACt > 2:3411203/1‑93 (MQ=255)
gctgcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACt > 1:4836187/1‑93 (MQ=255)
ctgcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACtt > 1:5168670/1‑93 (MQ=255)
ctgcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACtt < 2:5549255/93‑1 (MQ=255)
ctgcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACtt > 1:4096910/1‑93 (MQ=255)
tgcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTc > 1:6093288/1‑93 (MQ=255)
tgcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTc > 1:1876196/1‑93 (MQ=255)
gcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCa > 1:4601950/1‑93 (MQ=255)
gcATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCa > 1:2724554/1‑93 (MQ=255)
cATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATACACTTTaa > 1:5511182/1‑93 (MQ=255)
aTCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAAc > 2:4220968/1‑93 (MQ=255)
tCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAAcc < 1:3238268/93‑1 (MQ=255)
cTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCa < 1:4153994/93‑1 (MQ=255)
ttAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGa < 1:5993524/93‑1 (MQ=255)
tAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGAc < 2:1217794/93‑1 (MQ=255)
aaaTGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGAcg > 1:2087280/1‑93 (MQ=255)
aaaTGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGAcg > 1:890691/1‑93 (MQ=255)
aaTGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGAcgc > 2:798492/1‑93 (MQ=255)
tGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACgcgc > 1:2559853/1‑93 (MQ=255)
tGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACgcgc > 2:2834082/1‑93 (MQ=255)
gATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCNCa > 1:3648751/1‑93 (MQ=255)
attgcattgcGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCAc > 2:2087633/1‑93 (MQ=255)
attgcattgcGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCAc < 2:3201106/93‑1 (MQ=255)
ttgcattgcGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCAcc > 1:5681579/1‑93 (MQ=255)
ttgcattgcGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCAcc > 1:4922851/1‑93 (MQ=255)
tgcattgcGCTATTCAGCGTAATTTGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCg > 1:4028239/1‑93 (MQ=255)
ttgcGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTg < 1:3497744/93‑1 (MQ=255)
gcgcTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGt < 2:326519/93‑1 (MQ=255)
gcgcTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGt < 1:811393/93‑1 (MQ=255)
cgcTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGtt < 2:2636796/93‑1 (MQ=255)
gcTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTc < 2:3533916/93‑1 (MQ=255)
gcTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTc < 2:3952313/93‑1 (MQ=255)
cTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTTATGTACTTCAACCAGACGCGCACCGTTTGGTTCg > 1:757936/1‑93 (MQ=255)
cTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCg < 1:3171078/93‑1 (MQ=255)
cTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCg > 2:4073005/1‑93 (MQ=255)
tATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTTGTTCgg > 1:3758979/1‑93 (MQ=255)
tATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCgg < 1:1171478/93‑1 (MQ=255)
tATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCgg < 2:5172431/93‑1 (MQ=255)
aTTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGc < 2:3825749/93‑1 (MQ=255)
aTTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGc < 1:3018850/93‑1 (MQ=255)
aTTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGc < 2:1125715/93‑1 (MQ=255)
aTTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGc < 2:4549264/93‑1 (MQ=255)
aTTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGc > 2:3098689/1‑93 (MQ=255)
ttCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCa < 2:2159359/93‑1 (MQ=255)
cAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCaga < 2:1818444/93‑1 (MQ=255)
aGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCagag > 1:3385897/1‑93 (MQ=255)
gCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAgaga > 1:1618647/1‑93 (MQ=255)
cGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGAc < 1:1548381/93‑1 (MQ=255)
gTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACt > 2:5678763/1‑93 (MQ=255)
gTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACt < 1:1678084/93‑1 (MQ=255)
gTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACt < 2:1893047/93‑1 (MQ=255)
tAATTGGCGGCAGCTGCGGATCGTCATTAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACtt < 2:5210556/93‑1 (MQ=255)
tAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACtt < 2:3933699/93‑1 (MQ=255)
tAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACtt < 2:616026/93‑1 (MQ=255)
tAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACtt < 2:1549626/93‑1 (MQ=255)
aaTTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACttt < 2:603671/93‑1 (MQ=255)
aaTTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACttt > 1:1243731/1‑93 (MQ=255)
ttGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTa < 1:5247651/93‑1 (MQ=255)
tGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTAt > 1:5105023/1‑93 (MQ=255)
|
GAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCAGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATC > NC_000913/1168687‑1168866
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCAGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGGAG > NC_000913/1168684‑1168870
|
CCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCG < SRR4302533.5427275/94‑1 (MQ=60)
CCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCG < SRR4302533.2987556/94‑1 (MQ=60)
CCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCG < SRR4302533.272948/94‑1 (MQ=60)
CGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGG < SRR4302533.5470989/94‑1 (MQ=60)
GAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCA > SRR4302533.4494025/1‑94 (MQ=60)
CGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCT > SRR4302533.3305012/1‑94 (MQ=60)
CGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCT < SRR4302533.4907990/94‑1 (MQ=60)
CGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCT > SRR4302533.2618798/1‑94 (MQ=60)
GGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTG > SRR4302533.2231114/1‑94 (MQ=60)
GACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGC < SRR4302533.2101896/94‑1 (MQ=60)
ACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCG < SRR4302533.5596956/94‑1 (MQ=60)
ACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCG > SRR4302533.5119282/1‑94 (MQ=60)
ACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCG > SRR4302533.3142761/1‑94 (MQ=60)
CATCCATCACATGTTGCATCACTTCAGCGTCAGTGTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGG > SRR4302533.906409/1‑94 (MQ=60)
TCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGAT < SRR4302533.2461554/94‑1 (MQ=60)
TCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGAT < SRR4302533.1482541/94‑1 (MQ=60)
TCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGAT > SRR4302533.1320193/1‑94 (MQ=60)
CCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATC > SRR4302533.1581577/1‑94 (MQ=60)
ATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGT < SRR4302533.1892340/94‑1 (MQ=60)
ATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGT > SRR4302533.2487010/1‑94 (MQ=60)
TCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTC > SRR4302533.2629861/1‑94 (MQ=60)
TCACATGTTGCAGCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTC > SRR4302533.612689/1‑94 (MQ=60)
CACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCA > SRR4302533.4813506/1‑94 (MQ=60)
CATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATC > SRR4302533.3266213/1‑94 (MQ=60)
CATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATC > SRR4302533.1500065/1‑94 (MQ=60)
ATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCA > SRR4302533.4426799/1‑94 (MQ=60)
TTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATC < SRR4302533.6125882/94‑1 (MQ=60)
CATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTC > SRR4302533.3262805/1‑94 (MQ=60)
ATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCT > SRR4302533.4858326/1‑94 (MQ=60)
TCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTC < SRR4302533.1891060/94‑1 (MQ=60)
CACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCT > SRR4302533.4743990/1‑94 (MQ=60)
TTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGAC > SRR4302533.2114970/1‑94 (MQ=60)
CAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAG > SRR4302533.2894818/1‑94 (MQ=60)
GCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCG < SRR4302533.5922261/94‑1 (MQ=60)
GCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCG < SRR4302533.1459287/94‑1 (MQ=60)
CGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGG > SRR4302533.381066/1‑94 (MQ=60)
CGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGG < SRR4302533.5120386/94‑1 (MQ=60)
GTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGC > SRR4302533.5802055/1‑94 (MQ=60)
CAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTG > SRR4302533.5196793/1‑94 (MQ=60)
GTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGAT > SRR4302533.544985/1‑94 (MQ=60)
GTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGAT < SRR4302533.1637677/94‑1 (MQ=60)
TTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGT < SRR4302533.5623112/94‑1 (MQ=60)
TTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGT > SRR4302533.2370049/1‑94 (MQ=60)
TGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTA > SRR4302533.2453895/1‑94 (MQ=60)
GTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTAC < SRR4302533.6150131/94‑1 (MQ=60)
GTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTAC < SRR4302533.4729527/94‑1 (MQ=60)
TGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACT > SRR4302533.4865500/1‑94 (MQ=60)
TGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACT < SRR4302533.4836982/94‑1 (MQ=60)
TGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTAGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACGGGGGCTGATGTACT > SRR4302533.1781135/1‑94 (MQ=60)
GCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTT > SRR4302533.5199867/1‑94 (MQ=60)
GCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTT > SRR4302533.4121850/1‑94 (MQ=60)
CTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTC > SRR4302533.1887632/1‑94 (MQ=60)
CTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTC > SRR4302533.6130107/1‑94 (MQ=60)
TGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCA > SRR4302533.2741271/1‑94 (MQ=60)
TGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCA > SRR4302533.4629832/1‑94 (MQ=60)
TGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCA > SRR4302533.3428446/1‑94 (MQ=60)
GCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATacactttaa > SRR4302533.5544454/1‑85 (MQ=60)
CATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAAC > SRR4302533.687625/1‑94 (MQ=60)
ATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACC > SRR4302533.602120/1‑94 (MQ=60)
TCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCA < SRR4302533.3258221/94‑1 (MQ=60)
TCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCA > SRR4302533.2054568/1‑94 (MQ=60)
CTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAG < SRR4302533.3262743/94‑1 (MQ=60)
CTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAG < SRR4302533.4179165/94‑1 (MQ=60)
CTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAG < SRR4302533.5963548/94‑1 (MQ=60)
TTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGAC < SRR4302533.6029827/94‑1 (MQ=60)
TTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGAC < SRR4302533.5118882/94‑1 (MQ=60)
TAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACG > SRR4302533.895924/1‑94 (MQ=60)
TAAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACG > SRR4302533.2100134/1‑94 (MQ=60)
AAATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGC < SRR4302533.5128124/94‑1 (MQ=60)
AATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGAGGTACTTCAACGAGACTCG > SRR4302533.2662073/1‑94 (MQ=60)
ATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGC > SRR4302533.2575620/1‑94 (MQ=60)
ATGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACAAGACGCGC > SRR4302533.2609900/1‑94 (MQ=60)
TGATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCNCA > SRR4302533.3671187/1‑94 (MQ=60)
ATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACC > SRR4302533.4952674/1‑94 (MQ=60)
ATTGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACC > SRR4302533.5715896/1‑94 (MQ=60)
TTGCATTGCGCTATTCAGCGTAATTTGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCG > SRR4302533.4052758/1‑94 (MQ=60)
TGCATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGT < SRR4302533.90457/94‑1 (MQ=60)
ATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTG < SRR4302533.2906106/94‑1 (MQ=60)
ATTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTG < SRR4302533.2161460/94‑1 (MQ=60)
TTGCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGG < SRR4302533.3519312/94‑1 (MQ=60)
GCGCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTT < SRR4302533.816148/94‑1 (MQ=60)
GCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTTATGTACTTCAACCAGACGCGCACCGTTTGGTTCG > SRR4302533.762397/1‑94 (MQ=60)
GCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCG > SRR4302533.2812740/1‑94 (MQ=60)
GCTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCG < SRR4302533.5236800/94‑1 (MQ=60)
CTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTTGTTCGG > SRR4302533.3782022/1‑94 (MQ=60)
CTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGG > SRR4302533.4450942/1‑94 (MQ=60)
CTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGG > SRR4302533.3730401/1‑94 (MQ=60)
CTATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGG < SRR4302533.3190596/94‑1 (MQ=60)
TATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGC < SRR4302533.1178511/94‑1 (MQ=60)
TATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGC < SRR4302533.4108381/94‑1 (MQ=60)
ATTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCA < SRR4302533.3037331/94‑1 (MQ=60)
TTCAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGAAGCGCACCGTTTGGTTCGGCAG > SRR4302533.312409/1‑94 (MQ=60)
CAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAG < SRR4302533.4684479/94‑1 (MQ=60)
CAGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAG > SRR4302533.3406803/1‑94 (MQ=60)
AGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCTGAGA > SRR4302533.1537547/1‑94 (MQ=60)
AGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGA < SRR4302533.3584444/94‑1 (MQ=60)
AGCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGA > SRR4302533.1628452/1‑94 (MQ=60)
GCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGAC > SRR4302533.1237575/1‑94 (MQ=60)
GCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGAC > SRR4302533.1811109/1‑94 (MQ=60)
GCGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGAC < SRR4302533.1548048/94‑1 (MQ=60)
CGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACT > SRR4302533.4050958/1‑94 (MQ=60)
CGTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACT < SRR4302533.1557712/94‑1 (MQ=60)
GTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTT < SRR4302533.5533870/94‑1 (MQ=60)
GTAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTT < SRR4302533.1688248/94‑1 (MQ=60)
TAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTT < SRR4302533.3227434/94‑1 (MQ=60)
TAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTT > SRR4302533.1251159/1‑94 (MQ=60)
TAATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTT < SRR4302533.5677823/94‑1 (MQ=60)
AATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTT > SRR4302533.4164775/1‑94 (MQ=60)
AATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTT < SRR4302533.805199/94‑1 (MQ=60)
AATTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTT > SRR4302533.874632/1‑94 (MQ=60)
TTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTAT < SRR4302533.4611963/94‑1 (MQ=60)
TTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTAT > SRR4302533.6114061/1‑94 (MQ=60)
TTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTAT < SRR4302533.5279199/94‑1 (MQ=60)
TTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTAT > SRR4302533.5135861/1‑94 (MQ=60)
TTGGCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGAATTTTAT > SRR4302533.95469/1‑94 (MQ=60)
GCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGG < SRR4302533.5576087/94‑1 (MQ=60)
GCGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGG < SRR4302533.1503434/94‑1 (MQ=60)
CGGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTTTCGGA > SRR4302533.1182336/1‑94 (MQ=60)
GGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGGAG < SRR4302533.6345021/94‑1 (MQ=60)
GGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGGAG > SRR4302533.3390850/1‑94 (MQ=60)
|
CCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCATTGCGCTATTCAGCGTAATTGGCAGCAGCTGCGGATCGTCATCAATCTTCTCTGACAGCGGCTGATGTACTTCAACCAGACGCGCACCGTTTGGTTCGGCAGAGACTTTTATCGGAG > NC_000913/1168684‑1168870
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
