Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,220,610 A→G E61G (GAG→GGG)  b1170 → putative part of putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,220,6100AG100.0% 847.9 / NA 265E61G (GAG→GGG) b1170putative part of putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (125/140);  total (125/140)

Only 100 of 270 total aligned reads displayed.

CTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGAGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGC  >  NC_000913/1220520‑1220698
                                                                                          |                                                                                        
 tAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCg                                                                                       >  2:5846188/1‑93 (MQ=255)
 tAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCg                                                                                       >  2:6043834/1‑93 (MQ=255)
 tAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCg                                                                                       <  2:7715123/93‑1 (MQ=255)
 tAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCg                                                                                       >  1:2251791/1‑93 (MQ=255)
  aaCCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGt                                                                                      <  1:1158937/93‑1 (MQ=255)
   aCCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGtt                                                                                     <  1:9956178/93‑1 (MQ=255)
     cTGGCAGCTTCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCa                                                                                   <  2:823155/93‑1 (MQ=255)
     cTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCa                                                                                   <  1:694084/93‑1 (MQ=255)
      tGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCaa                                                                                  >  2:1338057/1‑93 (MQ=255)
       ggCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAg                                                                                 <  1:8805319/93‑1 (MQ=255)
        gCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGc                                                                                <  2:7643581/93‑1 (MQ=255)
           gctgctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGa                                                                             <  1:2988264/93‑1 (MQ=255)
           gctgctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGa                                                                             >  2:7959548/1‑93 (MQ=255)
           gctgctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGa                                                                             >  2:7417740/1‑93 (MQ=255)
            ctgctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGAc                                                                            <  1:9187586/93‑1 (MQ=255)
             tgctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACt                                                                           >  2:4214993/1‑93 (MQ=255)
             tgctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACt                                                                           >  2:9383893/1‑93 (MQ=255)
              gctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAANTGNNCAGGGGCGTTCNAGCCGANtt                                                                          >  1:205402/1‑93 (MQ=255)
              gctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACtt                                                                          >  2:4872775/1‑93 (MQ=255)
              gctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACtt                                                                          <  1:7330289/93‑1 (MQ=255)
              gctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACtt                                                                          <  1:8381107/93‑1 (MQ=255)
               ctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACttt                                                                         <  1:1091313/93‑1 (MQ=255)
               ctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACttt                                                                         >  1:247145/1‑93 (MQ=255)
               ctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACttt                                                                         <  1:3337829/93‑1 (MQ=255)
                  acacTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGc                                                                      >  2:2870906/1‑93 (MQ=255)
                  acacTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGc                                                                      <  2:9051438/93‑1 (MQ=255)
                   cacTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCt                                                                     >  1:8154322/1‑93 (MQ=255)
                   cacTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCt                                                                     >  2:3199369/1‑93 (MQ=255)
                    acTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGAGTTTGGCTa                                                                    >  2:719296/1‑93 (MQ=255)
                    acTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTa                                                                    >  2:3335071/1‑93 (MQ=255)
                     ctctTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTAc                                                                   >  1:9281648/1‑93 (MQ=255)
                      tctTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACg                                                                  >  1:8990801/1‑93 (MQ=255)
                       ctTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGt                                                                 >  2:9824299/1‑93 (MQ=255)
                        tttttGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTc                                                                >  1:4988584/1‑93 (MQ=255)
                        tttttGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTc                                                                >  2:9387687/1‑93 (MQ=255)
                         ttttGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCa                                                               >  2:2547039/1‑93 (MQ=255)
                           ttGTTATGCGTCTGAACGCCCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCaaa                                                             <  1:8001401/93‑1 (MQ=255)
                            tGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAAt                                                            <  1:6147755/93‑1 (MQ=255)
                               tATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTgg                                                         <  1:7775275/93‑1 (MQ=255)
                                  gCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCgg                                                      >  1:7604559/1‑93 (MQ=255)
                                    gTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGc                                                    >  1:3790908/1‑93 (MQ=255)
                                     tCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCa                                                   <  1:5331521/93‑1 (MQ=255)
                                      cTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCAt                                                  >  2:6636603/1‑93 (MQ=255)
                                       tGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATa                                                 <  1:1602994/93‑1 (MQ=255)
                                       tGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATa                                                 <  1:6209486/93‑1 (MQ=255)
                                        gAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATaa                                                >  1:146616/1‑93 (MQ=255)
                                         aaCGATCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAAt                                               <  2:8454056/93‑1 (MQ=255)
                                         aaCGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAAt                                               <  1:9886573/93‑1 (MQ=255)
                                         aaCGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAAt                                               >  1:9426761/1‑93 (MQ=255)
                                         aaCGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAAt                                               >  2:9086571/1‑93 (MQ=255)
                                           cGACCGTGCGGGTGAATCACGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGc                                             <  1:8660600/93‑1 (MQ=255)
                                           cGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGc                                             >  2:2668815/1‑93 (MQ=255)
                                            gACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGcc                                            >  2:710407/1‑93 (MQ=255)
                                             aCCGTGCGGGTGAAGCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCGGACTTTGGCTACGTCAAATGGGCGGGGATCATGccg                                           >  1:9362034/1‑92 (MQ=255)
                                              ccGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTg                                          >  1:4513570/1‑93 (MQ=255)
                                              ccGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTg                                          >  2:193678/1‑93 (MQ=255)
                                              ccGTGCGGGGGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGATCAAGCCGACTTTGGCTACATCAAATTGCCGGGCATCATGTCTg                                          >  2:1495660/1‑93 (MQ=255)
                                                gTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGc                                        <  1:4110393/93‑1 (MQ=255)
                                                 tGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCg                                       >  2:7881436/1‑93 (MQ=255)
                                                    gggTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGa                                    >  1:802754/1‑93 (MQ=255)
                                                      gTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACa                                  <  2:582143/93‑1 (MQ=255)
                                                      gTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACa                                  <  1:8778509/93‑1 (MQ=255)
                                                       tGAAACGCGCTACATCGAT‑CTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGc                                <  1:5547032/93‑1 (MQ=255)
                                                        gAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGc                                <  2:5954750/93‑1 (MQ=255)
                                                          aaCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCaa                              <  1:4421355/93‑1 (MQ=255)
                                                          aaCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCaa                              <  2:4767048/93‑1 (MQ=255)
                                                          aaCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCaa                              <  2:4979659/93‑1 (MQ=255)
                                                           aCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAAc                             >  2:112253/1‑93 (MQ=255)
                                                           aCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAAc                             <  1:475801/93‑1 (MQ=255)
                                                               gcTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGAc                         <  2:244726/93‑1 (MQ=255)
                                                               gcTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGAc                         >  1:5912598/1‑93 (MQ=255)
                                                               gcTACATCGATCCTGTAAATGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGGGTGACAGAAACGGag                         >  2:8623444/1‑92 (MQ=255)
                                                                 tACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAg                       <  2:4470979/93‑1 (MQ=255)
                                                                   cATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGtt                     <  2:4034422/93‑1 (MQ=255)
                                                                    aTCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTg                    >  2:3610/1‑93 (MQ=255)
                                                                     tCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTga                   <  2:5498628/93‑1 (MQ=255)
                                                                     tCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTga                   <  2:6855394/93‑1 (MQ=255)
                                                                     tCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTga                   >  2:528243/1‑93 (MQ=255)
                                                                        aTCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGaa                <  1:5729619/93‑1 (MQ=255)
                                                                        aTCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGaa                <  1:4245100/93‑1 (MQ=255)
                                                                        aTCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGaa                <  1:6433533/93‑1 (MQ=255)
                                                                        aTCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGaa                >  1:6772462/1‑93 (MQ=255)
                                                                         tCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAc               >  1:6698241/1‑93 (MQ=255)
                                                                         tCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAc               >  1:9144160/1‑93 (MQ=255)
                                                                         tCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAc               <  2:9714122/93‑1 (MQ=255)
                                                                          tcTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACg              <  1:7296097/92‑1 (MQ=255)
                                                                           cTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGa             >  1:7810943/1‑93 (MQ=255)
                                                                           cTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGa             <  2:8702370/93‑1 (MQ=255)
                                                                            tGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGGCAGTTGAGAACGAc            >  1:6609307/1‑93 (MQ=255)
                                                                             gTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGAcc           <  2:5361410/93‑1 (MQ=255)
                                                                              tAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGATAACGACCt          <  2:7400356/93‑1 (MQ=255)
                                                                               aaCTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGGCTTGCGTGACAGCAACGGACAGTTGAGAACGACATc         >  2:4541135/1‑93 (MQ=255)
                                                                               aaCTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGCTGAGAACGAACTc         >  2:1866743/1‑93 (MQ=255)
                                                                                  tGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCa      >  1:2206638/1‑93 (MQ=255)
                                                                                  tGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCAGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCa      <  2:6292348/93‑1 (MQ=255)
                                                                                   gAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCAt     <  1:3275745/93‑1 (MQ=255)
                                                                                   gAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGAACTCGCAt     >  2:8902946/1‑93 (MQ=255)
                                                                                   gAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCCGGACAGCAACGGACAGTTGAGAACGACCTCGCAt     >  2:9521345/1‑93 (MQ=255)
                                                                                    aaCAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATc    <  1:1775009/93‑1 (MQ=255)
                                                                                      cAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGc  >  2:2069764/1‑93 (MQ=255)
                                                                                          |                                                                                        
CTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGAGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGC  >  NC_000913/1220520‑1220698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGAGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTAC  >  NC_000913/1220518‑1220701
                                                                                            |                                                                                           
CGCTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGG                                                                                            >  SRR4302540.1403675/1‑94 (MQ=60)
 GCTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGC                                                                                           <  SRR4302540.3823395/94‑1 (MQ=60)
  CTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCG                                                                                          >  SRR4302540.2275962/1‑94 (MQ=60)
   TAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGT                                                                                         >  SRR4302540.4110390/1‑94 (MQ=60)
    AACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTT                                                                                        <  SRR4302540.1170987/94‑1 (MQ=60)
     ACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTC                                                                                       <  SRR4302540.10072383/94‑1 (MQ=60)
       CTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAA                                                                                     <  SRR4302540.701527/94‑1 (MQ=60)
       CTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAA                                                                                     >  SRR4302540.9022180/1‑94 (MQ=60)
        TGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAG                                                                                    <  SRR4302540.810119/94‑1 (MQ=60)
         GGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGC                                                                                   <  SRR4302540.8907111/94‑1 (MQ=60)
            AGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGA                                                                                >  SRR4302540.1106673/1‑94 (MQ=60)
            AGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGA                                                                                >  SRR4302540.4256549/1‑94 (MQ=60)
             GCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGAC                                                                               >  SRR4302540.4716231/1‑94 (MQ=60)
             GCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGAC                                                                               <  SRR4302540.3021219/94‑1 (MQ=60)
              CTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACT                                                                              <  SRR4302540.6408580/94‑1 (MQ=60)
              CTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACT                                                                              <  SRR4302540.9297768/94‑1 (MQ=60)
               TGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAANTGNNCAGGGGCGTTCNAGCCGANTT                                                                             >  SRR4302540.207414/1‑94 (MQ=60)
               TGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTT                                                                             >  SRR4302540.6960006/1‑94 (MQ=60)
                GCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTT                                                                            <  SRR4302540.7412127/94‑1 (MQ=60)
                GCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTT                                                                            >  SRR4302540.249535/1‑94 (MQ=60)
                GCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTT                                                                            >  SRR4302540.6755891/1‑94 (MQ=60)
                GCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTT                                                                            <  SRR4302540.8478357/94‑1 (MQ=60)
                GCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTT                                                                            <  SRR4302540.506734/94‑1 (MQ=60)
                 CTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTG                                                                           <  SRR4302540.3374480/94‑1 (MQ=60)
                 CTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTG                                                                           <  SRR4302540.3369938/94‑1 (MQ=60)
                 CTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTG                                                                           <  SRR4302540.1102517/94‑1 (MQ=60)
                  TAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGG                                                                          >  SRR4302540.1625297/1‑94 (MQ=60)
                  TAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGG                                                                          >  SRR4302540.2479798/1‑94 (MQ=60)
                   AACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGC                                                                         <  SRR4302540.10036251/94‑1 (MQ=60)
                    ACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCT                                                                        >  SRR4302540.8248999/1‑94 (MQ=60)
                    ACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCT                                                                        >  SRR4302540.8249000/1‑94 (MQ=60)
                    ACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCT                                                                        <  SRR4302540.5167137/94‑1 (MQ=60)
                    ACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCT                                                                        >  SRR4302540.9409180/1‑94 (MQ=60)
                      CCTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTAC                                                                      <  SRR4302540.453945/94‑1 (MQ=60)
                      CCTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTAC                                                                      <  SRR4302540.4449129/94‑1 (MQ=60)
                      CCTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTAC                                                                      <  SRR4302540.1295447/94‑1 (MQ=60)
                      CCTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACCCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTAC                                                                      <  SRR4302540.3186737/94‑1 (MQ=60)
                      ACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTAC                                                                      >  SRR4302540.9392584/1‑94 (MQ=60)
                       CTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACG                                                                     <  SRR4302540.7924912/94‑1 (MQ=60)
                       CTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACG                                                                     >  SRR4302540.9098475/1‑94 (MQ=60)
                         CTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTC                                                                   >  SRR4302540.809450/1‑94 (MQ=60)
                         CTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTC                                                                   >  SRR4302540.5042594/1‑94 (MQ=60)
                          TTTTTGTTGTGCGTCTGAACGCCCGTGCGAGTGAAACGCGCTACTTCGATCCTGTAACTGACCAGGGGAGTTCAAGCCGACTTTGGCTGCGTCA                                                                  <  SRR4302540.9057187/94‑1 (MQ=60)
                             TTGTTATGCGTCTGAACGCCCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAAT                                                               <  SRR4302540.8094526/94‑1 (MQ=60)
                              TGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATT                                                              <  SRR4302540.6216226/94‑1 (MQ=60)
                               GTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTG                                                             >  SRR4302540.10026261/1‑94 (MQ=60)
                               GTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTG                                                             <  SRR4302540.6656845/94‑1 (MQ=60)
                                 TATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGC                                                           <  SRR4302540.7866170/94‑1 (MQ=60)
                                 TATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGCGAGATCAAGCCGACTTTGGCTACGTCAAATTGGG                                                           >  SRR4302540.612365/1‑94 (MQ=60)
                                  ATGCGTCTGAACGACCGTGCGGGTGAAGCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCG                                                          <  SRR4302540.3771141/94‑1 (MQ=60)
                                  ATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCG                                                          <  SRR4302540.6162211/94‑1 (MQ=60)
                                  ATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCCGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCG                                                          <  SRR4302540.9148438/94‑1 (MQ=60)
                                   TGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGG                                                         >  SRR4302540.9516667/1‑94 (MQ=60)
                                   TGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGG                                                         >  SRR4302540.7690006/1‑94 (MQ=60)
                                    GCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGG                                                        <  SRR4302540.9415872/94‑1 (MQ=60)
                                     CGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGC                                                       >  SRR4302540.3832238/1‑94 (MQ=60)
                                     CGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGC                                                       >  SRR4302540.1278444/1‑94 (MQ=60)
                                      GTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCA                                                      >  SRR4302540.4958271/1‑94 (MQ=60)
                                       TCTGACCGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCAT                                                     <  SRR4302540.9169913/94‑1 (MQ=60)
                                       TCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCAT                                                     <  SRR4302540.5389934/94‑1 (MQ=60)
                                        CTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATA                                                    <  SRR4302540.4998897/94‑1 (MQ=60)
                                        CTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATA                                                    >  SRR4302540.9306932/1‑94 (MQ=60)
                                         TGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAA                                                   >  SRR4302540.2462227/1‑94 (MQ=60)
                                         TGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAA                                                   <  SRR4302540.6278590/94‑1 (MQ=60)
                                         TGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAA                                                   >  SRR4302540.8729288/1‑94 (MQ=60)
                                         TGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAA                                                   <  SRR4302540.1620528/94‑1 (MQ=60)
                                         TGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAA                                                   >  SRR4302540.148137/1‑94 (MQ=60)
                                          GAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAAT                                                  <  SRR4302540.2034020/94‑1 (MQ=60)
                                          GAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAAT                                                  >  SRR4302540.9538767/1‑94 (MQ=60)
                                           AACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATG                                                 <  SRR4302540.2222822/94‑1 (MQ=60)
                                           AACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATG                                                 <  SRR4302540.10002015/94‑1 (MQ=60)
                                            ACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGC                                                <  SRR4302540.7456091/94‑1 (MQ=60)
                                             CGACCGTGCGGGTGAATCACGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCC                                               <  SRR4302540.8761193/94‑1 (MQ=60)
                                              GACCGTGCGGGTGAAGCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCGGACTTTGGCTACGTCAAATGGGCGGGgatcatgccg                                              >  SRR4302540.9473519/1‑84 (MQ=60)
                                              GACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCT                                              >  SRR4302540.5942927/1‑94 (MQ=60)
                                               GCCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTG                                             <  SRR4302540.9756339/94‑1 (MQ=60)
                                               ACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTG                                             >  SRR4302540.4562470/1‑94 (MQ=60)
                                                  GTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCG                                          <  SRR4302540.4154763/94‑1 (MQ=60)
                                                    GCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTG                                        <  SRR4302540.7396852/94‑1 (MQ=60)
                                                     CGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGA                                       >  SRR4302540.811283/1‑94 (MQ=60)
                                                      GGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGAC                                      <  SRR4302540.6679784/94‑1 (MQ=60)
                                                      GGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGAC                                      <  SRR4302540.6778628/94‑1 (MQ=60)
                                                       GGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACA                                     <  SRR4302540.6486921/94‑1 (MQ=60)
                                                        GTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAG                                    >  SRR4302540.8856329/1‑94 (MQ=60)
                                                        GTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAG                                    <  SRR4302540.8880164/94‑1 (MQ=60)
                                                         TGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGC                                   <  SRR4302540.6805467/94‑1 (MQ=60)
                                                         TGAAACGCGCTACATCGAT‑CTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCA                                  <  SRR4302540.5608138/94‑1 (MQ=60)
                                                           AAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAA                                 <  SRR4302540.576493/94‑1 (MQ=60)
                                                            AACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAAC                                <  SRR4302540.4469262/94‑1 (MQ=60)
                                                             ACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACG                               <  SRR4302540.480895/94‑1 (MQ=60)
                                                               GCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGA                             >  SRR4302540.9381639/1‑94 (MQ=60)
                                                                CGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGAC                            >  SRR4302540.5977919/1‑94 (MQ=60)
                                                                CGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGAC                            >  SRR4302540.5977920/1‑94 (MQ=60)
                                                                CGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGAC                            <  SRR4302540.8785688/94‑1 (MQ=60)
                                                                 GCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACA                           <  SRR4302540.5566251/94‑1 (MQ=60)
                                                                 GCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACA                           >  SRR4302540.4498156/1‑94 (MQ=60)
                                                                 GCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACA                           >  SRR4302540.8896746/1‑94 (MQ=60)
                                                                  CTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAG                          >  SRR4302540.7306560/1‑94 (MQ=60)
                                                                    ACATCGATCCTGTAACTGAACAGGGGCTTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTT                        <  SRR4302540.2266707/94‑1 (MQ=60)
                                                                    ACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTT                        >  SRR4302540.1594656/1‑94 (MQ=60)
                                                                     CATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTG                       <  SRR4302540.2128570/94‑1 (MQ=60)
                                                                     CATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTG                       <  SRR4302540.623264/94‑1 (MQ=60)
                                                                     CATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTG                       <  SRR4302540.3141436/94‑1 (MQ=60)
                                                                         GATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTTAGAA                   >  SRR4302540.7722825/1‑94 (MQ=60)
                                                                         GATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAA                   >  SRR4302540.1502745/1‑94 (MQ=60)
                                                                         GATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAA                   >  SRR4302540.2036148/1‑94 (MQ=60)
                                                                         GATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAA                   <  SRR4302540.7010250/94‑1 (MQ=60)
                                                                         GATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAA                   >  SRR4302540.2772762/1‑94 (MQ=60)
                                                                         GATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAA                   >  SRR4302540.6847308/1‑94 (MQ=60)
                                                                         GATCCCGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAA                   >  SRR4302540.5522572/1‑94 (MQ=60)
                                                                          ATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAC                  <  SRR4302540.9282871/94‑1 (MQ=60)
                                                                          ATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAC                  >  SRR4302540.9254001/1‑94 (MQ=60)
                                                                          ATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAC                  <  SRR4302540.6505146/94‑1 (MQ=60)
                                                                          ATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAC                  <  SRR4302540.5792714/94‑1 (MQ=60)
                                                                          ATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAC                  <  SRR4302540.4291284/94‑1 (MQ=60)
                                                                          ATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAC                  >  SRR4302540.6772178/1‑94 (MQ=60)
                                                                          ATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAC                  <  SRR4302540.9841793/94‑1 (MQ=60)
                                                                            TCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGA                <  SRR4302540.7377525/94‑1 (MQ=60)
                                                                            CCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGA                >  SRR4302540.7902221/1‑94 (MQ=60)
                                                                            CCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGA                >  SRR4302540.7902220/1‑94 (MQ=60)
                                                                             CTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGGCAGTTGAGAACGAC               >  SRR4302540.6682491/1‑94 (MQ=60)
                                                                             CTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGAC               >  SRR4302540.8085825/1‑94 (MQ=60)
                                                                              TGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACC              <  SRR4302540.8179963/94‑1 (MQ=60)
                                                                               GTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCT             >  SRR4302540.3846685/1‑94 (MQ=60)
                                                                               GTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCT             >  SRR4302540.8544785/1‑94 (MQ=60)
                                                                               GTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCT             <  SRR4302540.4400127/94‑1 (MQ=60)
                                                                               GTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCT             <  SRR4302540.7371958/94‑1 (MQ=60)
                                                                               GTAACTGAACAGGGGCGGTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCT             <  SRR4302540.7456121/94‑1 (MQ=60)
                                                                                TAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTC            <  SRR4302540.6211346/94‑1 (MQ=60)
                                                                                  ACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGC          <  SRR4302540.3684315/94‑1 (MQ=60)
                                                                                   CTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCA         >  SRR4302540.2230475/1‑94 (MQ=60)
                                                                                    TGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCAT        <  SRR4302540.829968/94‑1 (MQ=60)
                                                                                     GAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATC       <  SRR4302540.3311515/94‑1 (MQ=60)
                                                                                      AACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCCTAATGCCTGGCGTGACAGCAACCGCCAGTTGAGAACGCACTAGCATCG      >  SRR4302540.254723/1‑94 (MQ=60)
                                                                                      AACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCG      <  SRR4302540.1794283/94‑1 (MQ=60)
                                                                                        CAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCT    <  SRR4302540.7796080/94‑1 (MQ=60)
                                                                                         AGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTA   >  SRR4302540.5707354/1‑94 (MQ=60)
                                                                                         AGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTA   >  SRR4302540.1514182/1‑94 (MQ=60)
                                                                                          GGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTAC  <  SRR4302540.9298046/94‑1 (MQ=60)
                                                                                          GGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTAC  <  SRR4302540.8529741/94‑1 (MQ=60)
                                                                                          GGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTAC  <  SRR4302540.1096027/94‑1 (MQ=60)
                                                                                          GGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTAC  <  SRR4302540.4052948/94‑1 (MQ=60)
                                                                                          GGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTAC  <  SRR4302540.8529740/94‑1 (MQ=60)
                                                                                          GGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTAC  <  SRR4302540.8493287/94‑1 (MQ=60)
                                                                                          GGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTAC  <  SRR4302540.1814648/94‑1 (MQ=60)
                                                                                            |                                                                                           
CGCTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGAGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTAC  >  NC_000913/1220518‑1220701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑