Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,220,610 A→G E61G (GAG→GGG)  b1170 → putative part of putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,220,6100AG100.0% 700.4 / NA 219E61G (GAG→GGG) b1170putative part of putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (115/104);  total (115/104)

Only 100 of 226 total aligned reads displayed.

CTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGAGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGC  >  NC_000913/1220520‑1220698
                                                                                          |                                                                                        
cTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGc                                                                                        >  1:5095218/1‑93 (MQ=255)
cTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGc                                                                                        <  1:502846/93‑1 (MQ=255)
 tAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCg                                                                                       >  1:3252482/1‑93 (MQ=255)
  aaCCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGGTCCTGTAACTGAACAGGGGCGt                                                                                      <  1:5795130/93‑1 (MQ=255)
  aaCCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGt                                                                                      <  2:5656331/93‑1 (MQ=255)
   aCCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGtt                                                                                     >  2:4775995/1‑93 (MQ=255)
      tGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCaa                                                                                  <  2:4110473/93‑1 (MQ=255)
        gCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGc                                                                                >  2:5980271/1‑93 (MQ=255)
          aGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCg                                                                              >  1:1005845/1‑93 (MQ=255)
           gctgctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGa                                                                             >  2:5843270/1‑93 (MQ=255)
            ctgctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGAc                                                                            <  1:2036409/93‑1 (MQ=255)
             tgctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACt                                                                           >  2:4973550/1‑93 (MQ=255)
              gctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACtt                                                                          >  1:1043500/1‑93 (MQ=255)
               ctAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACttt                                                                         <  1:2994518/93‑1 (MQ=255)
                 aaCACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTgg                                                                       >  2:3978859/1‑93 (MQ=255)
                  acacTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGc                                                                      >  2:4500842/1‑93 (MQ=255)
                  acacTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGc                                                                      >  1:437604/1‑93 (MQ=255)
                  acacTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGc                                                                      >  1:2138960/1‑93 (MQ=255)
                  acacTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGc                                                                      >  1:6093572/1‑93 (MQ=255)
                   cacTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCt                                                                     >  1:2163740/1‑93 (MQ=255)
                    cctctTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTa                                                                    <  2:3374961/92‑1 (MQ=255)
                    acTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTa                                                                    >  2:2520333/1‑93 (MQ=255)
                     ctctTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTAc                                                                   >  1:3411792/1‑93 (MQ=255)
                        tttttGTTAGGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTc                                                                <  2:5016993/93‑1 (MQ=255)
                        tttttGTAATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTc                                                                <  2:2308489/93‑1 (MQ=255)
                         ttttGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCa                                                               >  1:6258219/1‑93 (MQ=255)
                         ttttGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCa                                                               >  1:4781889/1‑93 (MQ=255)
                            tGTTTTGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAAt                                                            <  1:3853998/93‑1 (MQ=255)
                              ttATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTg                                                          <  2:180673/93‑1 (MQ=255)
                               tATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTgg                                                         >  1:2537285/1‑93 (MQ=255)
                                aTGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGc                                                        <  1:3762472/93‑1 (MQ=255)
                                aTGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGc                                                        >  1:4560281/1‑93 (MQ=255)
                                aTGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGc                                                        <  1:2829425/93‑1 (MQ=255)
                                 tGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCg                                                       <  2:6237439/93‑1 (MQ=255)
                                  gCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCTAGCCGACTTTGGCTACGTCAAATTGGCgg                                                      >  1:5574946/1‑93 (MQ=255)
                                  gCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCgg                                                      <  1:3030512/93‑1 (MQ=255)
                                  gCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCgg                                                      <  1:1472465/93‑1 (MQ=255)
                                    gTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGc                                                    >  1:3775441/1‑93 (MQ=255)
                                      cTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCAt                                                  <  2:2106153/93‑1 (MQ=255)
                                      cTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCAt                                                  >  2:1261779/1‑93 (MQ=255)
                                      cTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCAt                                                  <  1:1187676/93‑1 (MQ=255)
                                       tGAACGACCGTGCGGGTGGAACTCGCTACATCGATCCTGTAACTGAACAAGGGCGTTCAAGCCGGATTTCGCTTGGTCAAATTCGCGGGtata                                                 >  2:86036/1‑93 (MQ=255)
                                        gAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATaa                                                >  2:4639410/1‑93 (MQ=255)
                                          aCGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATg                                              >  1:1216191/1‑93 (MQ=255)
                                            gACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGcc                                            >  2:931687/1‑93 (MQ=255)
                                             aCCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGGCt                                           >  2:1134571/1‑93 (MQ=255)
                                             aCCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCt                                           <  2:4187160/93‑1 (MQ=255)
                                             aCCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCt                                           >  2:3730254/1‑93 (MQ=255)
                                              ccGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTg                                          >  2:1307290/1‑93 (MQ=255)
                                              ccGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTg                                          <  1:4341506/93‑1 (MQ=255)
                                                gTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGc                                        <  2:6084031/93‑1 (MQ=255)
                                                 tGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCg                                       <  1:5942054/93‑1 (MQ=255)
                                                 tGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCg                                       <  1:3212585/93‑1 (MQ=255)
                                                  gCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGt                                      <  2:787356/93‑1 (MQ=255)
                                                  gCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGt                                      <  2:4713317/93‑1 (MQ=255)
                                                    gggTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGa                                    >  2:3090527/1‑93 (MQ=255)
                                                     ggTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGAc                                   <  1:4139515/93‑1 (MQ=255)
                                                     ggTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGAc                                   >  2:4304634/1‑93 (MQ=255)
                                                      gTGAACCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACa                                  <  2:4127958/93‑1 (MQ=255)
                                                      gTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACa                                  <  2:3237245/93‑1 (MQ=255)
                                                       tGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAg                                 <  1:3133754/93‑1 (MQ=255)
                                                       tGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAg                                 <  1:2725488/93‑1 (MQ=255)
                                                          aaCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCaa                              <  2:4589251/93‑1 (MQ=255)
                                                          aaCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCaa                              >  1:1528082/1‑93 (MQ=255)
                                                           aCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAAc                             <  1:4482321/93‑1 (MQ=255)
                                                            cgcgCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACg                            <  2:5224092/93‑1 (MQ=255)
                                                            cgcgCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACg                            <  2:1682560/93‑1 (MQ=255)
                                                             gcgcTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACgg                           >  1:355046/1‑93 (MQ=255)
                                                              cgcTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGa                          <  1:5458986/93‑1 (MQ=255)
                                                              cgcTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGa                          >  2:5952047/1‑93 (MQ=255)
                                                               gcTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGAc                         >  1:1351869/1‑93 (MQ=255)
                                                               gcTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGAc                         <  1:2937228/93‑1 (MQ=255)
                                                               gcTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGAc                         <  2:2865919/93‑1 (MQ=255)
                                                                cTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACa                        >  2:173365/1‑93 (MQ=255)
                                                                cTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACa                        <  2:5965665/93‑1 (MQ=255)
                                                                cTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACa                        >  1:5633322/1‑93 (MQ=255)
                                                                 tACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCACATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAg                       >  2:3795110/1‑93 (MQ=255)
                                                                  ccATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGt                      <  1:4931075/92‑1 (MQ=255)
                                                                  aCATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGt                      >  1:679319/1‑93 (MQ=255)
                                                                  aCATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGt                      <  1:1614722/93‑1 (MQ=255)
                                                                  aCATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGt                      >  2:3006437/1‑93 (MQ=255)
                                                                  aCATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGt                      <  2:5722593/93‑1 (MQ=255)
                                                                   cgtCGATCCTGTCACTGGCCAGGGGCGTTCCAGCCGACTTTGGCTACGTCAAATTGGCGGGCTTCATGCCTGGCGTGACAGCCACGGACAGtt                     <  1:6305468/91‑1 (MQ=255)
                                                                    aTCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTg                    >  1:2739529/1‑93 (MQ=255)
                                                                    aTCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGGTg                    >  2:5343007/1‑93 (MQ=255)
                                                                    aTCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGCTg                    >  2:2584119/1‑93 (MQ=255)
                                                                     tCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTCGCGTGACAGCAACGGACACTTga                   >  2:2632925/1‑93 (MQ=255)
                                                                      cGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTgag                  <  2:5487072/93‑1 (MQ=255)
                                                                      cGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTgag                  <  1:5830141/93‑1 (MQ=255)
                                                                        aTCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGaa                <  2:3603747/93‑1 (MQ=255)
                                                                         tCCTGTACCTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAc               <  2:4822703/93‑1 (MQ=255)
                                                                            tGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGAc            >  2:3877386/1‑93 (MQ=255)
                                                                            tGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGAc            >  2:4680732/1‑93 (MQ=255)
                                                                              tAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCt          <  2:1589345/93‑1 (MQ=255)
                                                                               aaCTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTc         >  2:4799592/1‑93 (MQ=255)
                                                                                aCTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCg        <  1:1951760/93‑1 (MQ=255)
                                                                                aCTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCg        <  2:4404519/93‑1 (MQ=255)
                                                                                  tGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCa      >  2:2450331/1‑93 (MQ=255)
                                                                                    aaCAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATc    <  1:4092180/93‑1 (MQ=255)
                                                                                    aaCAGGGCCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGATAACGACCTCGCATc    <  2:2248342/93‑1 (MQ=255)
                                                                                          |                                                                                        
CTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGAGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGC  >  NC_000913/1220520‑1220698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGAGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTACG  >  NC_000913/1220518‑1220702
                                                                                            |                                                                                            
CGCTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGG                                                                                             >  SRR4302533.3217117/1‑94 (MQ=60)
CGCTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGG                                                                                             >  SRR4302533.1580924/1‑94 (MQ=60)
 GCTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGC                                                                                            >  SRR4302533.5126001/1‑94 (MQ=60)
 GCTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGC                                                                                            <  SRR4302533.2748574/94‑1 (MQ=60)
 GCTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGC                                                                                            <  SRR4302533.439619/94‑1 (MQ=60)
  CTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCG                                                                                           >  SRR4302533.3272537/1‑94 (MQ=60)
  CTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCG                                                                                           >  SRR4302533.5287744/1‑94 (MQ=60)
  CTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCG                                                                                           <  SRR4302533.505835/94‑1 (MQ=60)
    AACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGGTCCTGTAACTGAACAGGGGCGTT                                                                                         <  SRR4302533.5830142/94‑1 (MQ=60)
    AACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTT                                                                                         <  SRR4302533.2989406/94‑1 (MQ=60)
    AACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTT                                                                                         >  SRR4302533.4762721/1‑94 (MQ=60)
      CCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCA                                                                                       >  SRR4302533.3205555/1‑94 (MQ=60)
       CTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAA                                                                                      <  SRR4302533.2874871/94‑1 (MQ=60)
         GGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGC                                                                                    >  SRR4302533.3367515/1‑94 (MQ=60)
          GCAGCTGCTAACACTCTGTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCC                                                                                   <  SRR4302533.5882754/94‑1 (MQ=60)
           CAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCG                                                                                  >  SRR4302533.1011728/1‑94 (MQ=60)
              CTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACT                                                                               <  SRR4302533.2048969/94‑1 (MQ=60)
              CTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACT                                                                               <  SRR4302533.3497537/94‑1 (MQ=60)
               TGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTT                                                                              >  SRR4302533.1049634/1‑94 (MQ=60)
               CGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTT                                                                              <  SRR4302533.5663222/94‑1 (MQ=60)
                 CTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTG                                                                            <  SRR4302533.3012827/94‑1 (MQ=60)
                 CTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTG                                                                            >  SRR4302533.1596607/1‑94 (MQ=60)
                  TAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGG                                                                           >  SRR4302533.3983811/1‑94 (MQ=60)
                   AACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGC                                                                          >  SRR4302533.6130392/1‑94 (MQ=60)
                   AACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGC                                                                          >  SRR4302533.440211/1‑94 (MQ=60)
                   AACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGC                                                                          >  SRR4302533.2152145/1‑94 (MQ=60)
                    ACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCT                                                                         >  SRR4302533.2177053/1‑94 (MQ=60)
                      ACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTAC                                                                       >  SRR4302533.2286019/1‑94 (MQ=60)
                      ACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTAC                                                                       >  SRR4302533.3432865/1‑94 (MQ=60)
                       CTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACG                                                                      >  SRR4302533.3041/1‑94 (MQ=60)
                       CTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACG                                                                      >  SRR4302533.1086612/1‑94 (MQ=60)
                        TCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGT                                                                     <  SRR4302533.2710970/94‑1 (MQ=60)
                         CTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGATACGTC                                                                    >  SRR4302533.1523387/1‑94 (MQ=60)
                          TTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCA                                                                   >  SRR4302533.6295642/1‑94 (MQ=60)
                          TTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCA                                                                   >  SRR4302533.4810861/1‑94 (MQ=60)
                             TTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAAT                                                                <  SRR4302533.3797350/94‑1 (MQ=60)
                              TGTTTTGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATT                                                               <  SRR4302533.3877538/94‑1 (MQ=60)
                              TGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTAAAGCCGACTTTGGCTACGTCAAATT                                                               >  SRR4302533.4852111/1‑94 (MQ=60)
                                TTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGG                                                             >  SRR4302533.5528813/1‑94 (MQ=60)
                                TTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGG                                                             >  SRR4302533.3814065/1‑94 (MQ=60)
                                TTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGG                                                             >  SRR4302533.1048367/1‑94 (MQ=60)
                                TTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGG                                                             >  SRR4302533.2552907/1‑94 (MQ=60)
                                 TATGCGTCTGAACGACCGTGCGGGTGAAGCGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGC                                                            <  SRR4302533.6252881/94‑1 (MQ=60)
                                 TATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGC                                                            >  SRR4302533.4587942/1‑94 (MQ=60)
                                  ATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCG                                                           <  SRR4302533.6302359/94‑1 (MQ=60)
                                  ATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCG                                                           >  SRR4302533.1777133/1‑94 (MQ=60)
                                  ATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCG                                                           <  SRR4302533.3785536/94‑1 (MQ=60)
                                  ATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCG                                                           <  SRR4302533.2846835/94‑1 (MQ=60)
                                   TGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCTAGCCGACTTTGGCTACGTCAAATTGGCGG                                                          >  SRR4302533.5608636/1‑94 (MQ=60)
                                    GCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGG                                                         <  SRR4302533.1358130/94‑1 (MQ=60)
                                    GCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGG                                                         <  SRR4302533.1481364/94‑1 (MQ=60)
                                    GCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGG                                                         <  SRR4302533.3049058/94‑1 (MQ=60)
                                     CGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGC                                                        >  SRR4302533.3798584/1‑94 (MQ=60)
                                      GTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCG                                                       >  SRR4302533.1385204/1‑94 (MQ=60)
                                      GTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCA                                                       >  SRR4302533.1207796/1‑94 (MQ=60)
                                        CTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATA                                                     <  SRR4302533.1194802/94‑1 (MQ=60)
                                           AACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATG                                                  >  SRR4302533.1223496/1‑94 (MQ=60)
                                           AACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATG                                                  <  SRR4302533.5065246/94‑1 (MQ=60)
                                              GACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCT                                               >  SRR4302533.3700319/1‑94 (MQ=60)
                                               ACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTG                                              <  SRR4302533.454531/94‑1 (MQ=60)
                                               ACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTG                                              >  SRR4302533.2780774/1‑94 (MQ=60)
                                                CCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGG                                             <  SRR4302533.211570/94‑1 (MQ=60)
                                                CCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGG                                             <  SRR4302533.4367670/94‑1 (MQ=60)
                                                CCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGG                                             <  SRR4302533.3075515/94‑1 (MQ=60)
                                                   TGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGT                                          <  SRR4302533.5977990/94‑1 (MQ=60)
                                                   TGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGT                                          <  SRR4302533.3232372/94‑1 (MQ=60)
                                                   TGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGT                                          <  SRR4302533.4334795/94‑1 (MQ=60)
                                                    GCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTG                                         <  SRR4302533.4992520/94‑1 (MQ=60)
                                                      GGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGAC                                       >  SRR4302533.4378911/1‑94 (MQ=60)
                                                       GGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACA                                      >  SRR4302533.5656849/1‑94 (MQ=60)
                                                       GGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACA                                      <  SRR4302533.4164141/94‑1 (MQ=60)
                                                       GGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACA                                      <  SRR4302533.4164623/94‑1 (MQ=60)
                                                        GTGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAG                                     <  SRR4302533.3231857/94‑1 (MQ=60)
                                                         TGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGC                                    <  SRR4302533.2742208/94‑1 (MQ=60)
                                                         TGAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGC                                    <  SRR4302533.3153024/94‑1 (MQ=60)
                                                          GAAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCA                                   <  SRR4302533.131709/94‑1 (MQ=60)
                                                           AAACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAA                                  >  SRR4302533.1537276/1‑94 (MQ=60)
                                                            AAGGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTTGCGAGCATAATGCCTGGCGTGACAGCAAC                                 >  SRR4302533.6125014/1‑94 (MQ=60)
                                                             ACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACG                                <  SRR4302533.4509464/94‑1 (MQ=60)
                                                             ACGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACG                                <  SRR4302533.5864658/94‑1 (MQ=60)
                                                              CGCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGG                               >  SRR4302533.357211/1‑94 (MQ=60)
                                                               GCGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGA                              <  SRR4302533.2021805/94‑1 (MQ=60)
                                                                CGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGAC                             >  SRR4302533.1360001/1‑94 (MQ=60)
                                                                CGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGAC                             <  SRR4302533.5491873/94‑1 (MQ=60)
                                                                CGCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGAC                             <  SRR4302533.2173709/94‑1 (MQ=60)
                                                                 GCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACA                            <  SRR4302533.2955181/94‑1 (MQ=60)
                                                                 GCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACA                            >  SRR4302533.5667388/1‑94 (MQ=60)
                                                                 GCTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACA                            <  SRR4302533.295315/94‑1 (MQ=60)
                                                                  CTACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAG                           <  SRR4302533.3782899/94‑1 (MQ=60)
                                                                   TACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGT                          >  SRR4302533.683333/1‑94 (MQ=60)
                                                                    CCATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTT                         <  SRR4302533.4960936/94‑1 (MQ=60)
                                                                    ACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTT                         <  SRR4302533.1624512/94‑1 (MQ=60)
                                                                    ACATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTT                         <  SRR4302533.3252426/94‑1 (MQ=60)
                                                                     CGTCGATCCTGTCACTGGCCAGGGGCGTTCCAGCCGACTTTGGCTACGTCAAATTGGCGGGCTTCATGCCTGGCGTGACAGCCACGGACAGTTG                        <  SRR4302533.6343203/94‑1 (MQ=60)
                                                                     CATCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTG                        >  SRR4302533.2756326/1‑94 (MQ=60)
                                                                       TCGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAG                      <  SRR4302533.4470599/94‑1 (MQ=60)
                                                                        CGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGA                     <  SRR4302533.5865373/94‑1 (MQ=60)
                                                                        CGATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGA                     >  SRR4302533.4472998/1‑94 (MQ=60)
                                                                          ATCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAAC                   <  SRR4302533.676683/94‑1 (MQ=60)
                                                                           TCCTGTAGCTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACG                  <  SRR4302533.571746/94‑1 (MQ=60)
                                                                           TCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACG                  >  SRR4302533.4989384/1‑94 (MQ=60)
                                                                           TCCTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACG                  >  SRR4302533.1778721/1‑94 (MQ=60)
                                                                             CTGTAACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGAC                >  SRR4302533.927571/1‑94 (MQ=60)
                                                                                 AACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCG            <  SRR4302533.976993/94‑1 (MQ=60)
                                                                                  ACTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGC           <  SRR4302533.1963656/94‑1 (MQ=60)
                                                                                   CTGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCA          >  SRR4302533.2316116/1‑94 (MQ=60)
                                                                                    TGAACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCAT         >  SRR4302533.6036806/1‑94 (MQ=60)
                                                                                      AACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCG       <  SRR4302533.4117089/94‑1 (MQ=60)
                                                                                      AACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCG       >  SRR4302533.2746395/1‑94 (MQ=60)
                                                                                       ACAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTCGCGGGCATAATGCCTGGCGTGACAGCAACGGACCGCTGAGAACGACCccgccacgc      >  SRR4302533.2977193/1‑85 (MQ=60)
                                                                                        CAGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCT     <  SRR4302533.4001589/94‑1 (MQ=60)
                                                                                         AGGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTA    >  SRR4302533.6090797/1‑94 (MQ=60)
                                                                                          GGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTAC   <  SRR4302533.5819654/94‑1 (MQ=60)
                                                                                          GGGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTAC   <  SRR4302533.3220743/94‑1 (MQ=60)
                                                                                           GGGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTACG  <  SRR4302533.3655736/94‑1 (MQ=60)
                                                                                            |                                                                                            
CGCTAACCTGGCAGCTGCTAACACTCTTTTTGTTATGCGTCTGAACGACCGTGCGGGTGAAACGCGCTACATCGATCCTGTAACTGAACAGGAGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTGACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTACG  >  NC_000913/1220518‑1220702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑