Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,262,935 |
A→G |
intergenic (‑212/‑2) |
hemM ← / → hemA |
HemM/HemA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,262,935 | 0 | A | G | 88.7%
| 563.3
/ 56.0
| 231 | intergenic (‑212/‑2) | hemM/hemA | HemM/HemA |
| Reads supporting (aligned to +/- strand): ref base A (15/11); new base G (111/94); total (126/105) |
| Fisher's exact test for biased strand distribution p-value = 8.35e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.40e-01 |
Only 100 of 238 total aligned reads displayed.
TCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAG > NC_000913/1262844‑1263026
|
aaaaGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATg > 2:4396699/1‑93 (MQ=255)
aaaaGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATg > 2:2878325/1‑93 (MQ=255)
aaaaGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATg < 1:5602690/93‑1 (MQ=255)
aaaaGGGGGCGCTCTCTTTTATTAATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATg < 2:5526911/93‑1 (MQ=255)
aaaGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGa < 2:2866438/93‑1 (MQ=255)
aGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGAcc > 2:2493717/1‑93 (MQ=255)
aGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGAcc > 1:6059450/1‑93 (MQ=255)
aGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGAcc > 1:5770023/1‑93 (MQ=255)
aGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGAcc < 1:3836256/93‑1 (MQ=255)
gggggCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGAccc < 1:4104675/93‑1 (MQ=255)
gggCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCtt > 2:9002113/1‑93 (MQ=255)
ggCGCTCTCTTTTATTGATCTTACGCCTCCTGTATGATCCAATCAGGCTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCttt < 1:2188818/93‑1 (MQ=255)
ggCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCttt > 1:1686978/1‑93 (MQ=255)
ggCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCCCAGGCATGACCCttt > 1:6323551/1‑93 (MQ=255)
gcgcTCCCTTTTATTGATCTTACGCATTCTGTATGATGCACGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACACGACCCtttt < 2:5968208/93‑1 (MQ=255)
gcTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAg > 2:699743/1‑93 (MQ=255)
ctctctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGc > 2:500287/1‑93 (MQ=255)
tctctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCa > 1:9346016/1‑93 (MQ=255)
ctctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCAc > 1:9247407/1‑93 (MQ=255)
tctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACt > 2:7555044/1‑93 (MQ=255)
tctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACt < 2:6401353/93‑1 (MQ=255)
tctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACt > 1:7499897/1‑93 (MQ=255)
ctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTc < 2:2182393/93‑1 (MQ=255)
ttttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGCCCCTTTTAGCACTCg < 1:6009357/93‑1 (MQ=255)
ttttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCg > 1:3994581/1‑93 (MQ=255)
tttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCgg > 1:714453/1‑93 (MQ=255)
ttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGt > 1:2349424/1‑93 (MQ=255)
aTTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTAt > 1:2909524/1‑93 (MQ=255)
ttGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATc > 1:2366571/1‑93 (MQ=255)
ttGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTCTAGCACTCGGTAta > 1:4630332/1‑92 (MQ=255)
tGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCa > 2:937846/1‑93 (MQ=255)
gATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCaa < 1:4260373/93‑1 (MQ=255)
aTCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAAc > 1:7143506/1‑93 (MQ=255)
tCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAAcc > 1:6572017/1‑93 (MQ=255)
tCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAAcc > 2:6743186/1‑93 (MQ=255)
ttACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGCATCAACCAt > 2:419618/1‑93 (MQ=255)
ttACGCATCCTGTATGATGCAAGCAGACTAAACCTATCAACGATGGTCTTATTTCCCACAGACATGACCATTTTAGCACTCGGTATCAAcaca > 2:3223924/1‑90 (MQ=255)
cGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATaaa < 2:8412916/93‑1 (MQ=255)
cGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATaaa < 2:1774121/93‑1 (MQ=255)
cGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATaaa < 2:9783494/93‑1 (MQ=255)
gCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATaaaa < 2:6077539/93‑1 (MQ=255)
gCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATaaaa > 1:1833751/1‑93 (MQ=255)
cATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAAc > 1:2763708/1‑93 (MQ=255)
cTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCa > 2:8158059/1‑93 (MQ=255)
tGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCAc < 2:7141607/93‑1 (MQ=255)
tGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCAc < 2:1411279/93‑1 (MQ=255)
tGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCAc < 2:5940235/93‑1 (MQ=255)
gTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCAcc > 1:7991514/1‑93 (MQ=255)
gTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCAcc > 2:9272027/1‑93 (MQ=255)
gTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCAcc < 2:3569853/93‑1 (MQ=255)
atgatgCAAGCAGACTAACCCTATCAACGTTGGTATTATTTTCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGTACCTg > 1:9898074/1‑93 (MQ=255)
atgatgCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTg < 1:5065018/93‑1 (MQ=255)
atgatgCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTg < 2:8516280/93‑1 (MQ=255)
tgatgCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGt < 2:267419/93‑1 (MQ=255)
tgatgCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGt > 1:8747573/1‑93 (MQ=255)
gatgCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCTGTATCAACCATAAAACGGCACCTGTa > 1:1022468/1‑93 (MQ=255)
atgCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTAt < 2:9739067/93‑1 (MQ=255)
atgCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTAt > 2:8310225/1‑93 (MQ=255)
cAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGc < 1:6111964/93‑1 (MQ=255)
cAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCg < 2:1586881/93‑1 (MQ=255)
cAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCg > 2:7560136/1‑93 (MQ=255)
agccTAACCCTATCATCGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCga < 2:8923218/90‑1 (MQ=255)
aGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCga > 1:1994338/1‑93 (MQ=255)
aGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCga < 2:3094506/93‑1 (MQ=255)
gACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCgag > 2:6690388/1‑93 (MQ=255)
gACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCgag > 2:1788381/1‑93 (MQ=255)
aCTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCgaga > 2:8696560/1‑93 (MQ=255)
cTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGaa < 2:3780491/93‑1 (MQ=255)
cTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGaa < 2:4125483/93‑1 (MQ=255)
tAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAAc > 2:8246335/1‑93 (MQ=255)
tAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAAc > 1:2751293/1‑93 (MQ=255)
tAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAAc > 2:579809/1‑93 (MQ=255)
tAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAAc > 2:4817477/1‑93 (MQ=255)
aaCCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACg < 2:3461411/93‑1 (MQ=255)
ccTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACgtgt < 2:9086927/93‑1 (MQ=255)
ccTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACgtgt > 2:6885910/1‑93 (MQ=255)
aTCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATc < 2:8625167/93‑1 (MQ=255)
aTCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATc < 1:32418/93‑1 (MQ=255)
cGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGtttt > 2:7864558/1‑93 (MQ=255)
cGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGtttt < 1:5334033/93‑1 (MQ=255)
ttGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGATAACGTGTATCGTTTTCg > 1:8970110/1‑93 (MQ=255)
ttGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCg > 2:5372338/1‑93 (MQ=255)
ttGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCg > 1:9130442/1‑93 (MQ=255)
ggTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGcc > 2:4779992/1‑93 (MQ=255)
ggTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATAGCTGCGAGAACGTGTATCGTTTTCGcc > 2:7496788/1‑93 (MQ=255)
tattatTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCgg < 2:2774131/93‑1 (MQ=255)
ttattTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGAt > 2:5598692/1‑93 (MQ=255)
ttattTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGAt < 1:3528219/93‑1 (MQ=255)
tattTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATa > 2:2235354/1‑93 (MQ=255)
attTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATaa < 2:1509860/93‑1 (MQ=255)
tttCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAg > 2:2102391/1‑93 (MQ=255)
ttCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGc > 2:1071785/1‑93 (MQ=255)
tCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCt > 2:4539217/1‑93 (MQ=255)
ccGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTca > 1:3629147/1‑92 (MQ=255)
cGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCAGGATAAGCTcaa < 1:8607491/93‑3 (MQ=255)
gCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAAt < 1:193691/93‑1 (MQ=255)
cAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATc < 2:6301041/93‑1 (MQ=255)
cAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATc < 2:5686766/93‑1 (MQ=255)
cAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATc > 1:6901090/1‑93 (MQ=255)
cAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATc > 1:8490530/1‑93 (MQ=255)
|
TCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAG > NC_000913/1262844‑1263026
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGC > NC_000913/1262842‑1263028
|
ACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGG < SRR4302540.2590021/94‑1 (MQ=60)
ACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGG > SRR4302540.3004766/1‑94 (MQ=60)
ACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGG < SRR4302540.1104349/94‑1 (MQ=60)
ACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGG < SRR4302540.3511742/94‑1 (MQ=60)
TCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCA < SRR4302540.2596526/94‑1 (MQ=60)
ACAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCAT < SRR4302540.5296174/94‑1 (MQ=60)
AAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGA < SRR4302540.5664342/94‑1 (MQ=60)
AAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACC > SRR4302540.6126795/1‑94 (MQ=60)
AAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACC > SRR4302540.5833754/1‑94 (MQ=60)
AGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCC < SRR4302540.3877986/94‑1 (MQ=60)
AGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCC < SRR4302540.3484907/94‑1 (MQ=60)
GGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCT < SRR4302540.4148956/94‑1 (MQ=60)
GGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTT > SRR4302540.2656886/1‑94 (MQ=60)
GAGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGTCTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTT < SRR4302540.28442/94‑1 (MQ=60)
GGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTT > SRR4302540.1705276/1‑94 (MQ=60)
GGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTT > SRR4302540.6393973/1‑94 (MQ=60)
GGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCCCAGGCATGACCCTTT > SRR4302540.6393974/1‑94 (MQ=60)
GGCGCTCTCTTTTATTGATCTTACGCCTCCTGTATGATCCAATCAGGCTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTT < SRR4302540.2212450/94‑1 (MQ=60)
GGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTT > SRR4302540.10027506/1‑94 (MQ=60)
GCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTA < SRR4302540.3972290/94‑1 (MQ=60)
CGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAG < SRR4302540.9261426/94‑1 (MQ=60)
CTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCA < SRR4302540.5684599/94‑1 (MQ=60)
CTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCA > SRR4302540.9457353/1‑94 (MQ=60)
CTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCA > SRR4302540.8613506/1‑94 (MQ=60)
CTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCA < SRR4302540.5657178/94‑1 (MQ=60)
TCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCAC > SRR4302540.9358124/1‑94 (MQ=60)
TCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCAC > SRR4302540.4881337/1‑94 (MQ=60)
CTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACT > SRR4302540.7583700/1‑94 (MQ=60)
TCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTC < SRR4302540.7207214/94‑1 (MQ=60)
TCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTC > SRR4302540.4121035/1‑94 (MQ=60)
CTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCG > SRR4302540.4037571/1‑94 (MQ=60)
CTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCG < SRR4302540.5698742/94‑1 (MQ=60)
TTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACTTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGG < SRR4302540.6075994/94‑1 (MQ=60)
TTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGCCCCTTTTAGCACTCGG < SRR4302540.6075993/94‑1 (MQ=60)
TTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGG < SRR4302540.6075992/94‑1 (MQ=60)
TTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGG > SRR4302540.722125/1‑94 (MQ=60)
TTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGT > SRR4302540.2374726/1‑94 (MQ=60)
TTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGATGGTATTATTTCCCGCAGGCATGACCCGTTTAGCACTCGGT > SRR4302540.9090141/1‑94 (MQ=60)
TATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTAT > SRR4302540.2941317/1‑94 (MQ=60)
ATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATC > SRR4302540.8530247/1‑94 (MQ=60)
ATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATC < SRR4302540.1950045/94‑1 (MQ=60)
ATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATC > SRR4302540.2392059/1‑94 (MQ=60)
ATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTCTAGCACTCGGTATA > SRR4302540.4679928/1‑94 (MQ=60)
GATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAAC > SRR4302540.7223097/1‑94 (MQ=60)
GATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAAC < SRR4302540.4306714/94‑1 (MQ=60)
ATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACC > SRR4302540.6644830/1‑94 (MQ=60)
TCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCA < SRR4302540.1960919/94‑1 (MQ=60)
TCGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAA < SRR4302540.6111214/94‑1 (MQ=60)
ACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAA < SRR4302540.8726783/94‑1 (MQ=60)
CGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAA > SRR4302540.1853819/1‑94 (MQ=60)
CGCATCCTGTATGATGCAAGCAAACTAACCCTGTCAACGTTGGTATTACTTCCCGCCGGCATGACCCTTTTATCCCTCGGTACCAAACATACAA > SRR4302540.1853820/1‑94 (MQ=48)
GCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAAC > SRR4302540.2793567/1‑94 (MQ=60)
GCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAAC > SRR4302540.2793566/1‑94 (MQ=60)
GCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAAC < SRR4302540.10004285/94‑1 (MQ=60)
CATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACG < SRR4302540.9188607/94‑1 (MQ=60)
ATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGG < SRR4302540.3662028/94‑1 (MQ=60)
CTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCAC > SRR4302540.9404591/1‑94 (MQ=60)
TGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCCCC > SRR4302540.4460115/1‑94 (MQ=60)
TGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACC > SRR4302540.8084549/1‑94 (MQ=60)
TATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTTCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGTACCTG > SRR4302540.10013689/1‑94 (MQ=60)
TATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTG > SRR4302540.23465/1‑94 (MQ=60)
TATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTG > SRR4302540.7801038/1‑94 (MQ=60)
TATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTG < SRR4302540.9507533/94‑1 (MQ=60)
ATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGT < SRR4302540.5119782/94‑1 (MQ=60)
ATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGT > SRR4302540.8849084/1‑94 (MQ=60)
TGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCTGTATCAACCATAAAACGGCACCTGTA > SRR4302540.1032840/1‑94 (MQ=60)
ATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATC < SRR4302540.7402298/94‑1 (MQ=60)
GCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCAGGACCCTTTTAGCACTCGGTATCACCAATAAAACGGACCCTGTATCGT > SRR4302540.7125673/1‑94 (MQ=60)
ccagcagtgtaaaCCTATCAACGTTGGTCTCATTTCCCGCAGGCATGACCCTTTTCGCACTCGGTATCAACCAGAAAACGGCACCTGTATCGCT < SRR4302540.6180025/81‑1 (MQ=60)
CAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCT < SRR4302540.6180024/94‑1 (MQ=60)
AAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTG > SRR4302540.2300155/1‑94 (MQ=60)
CAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGA > SRR4302540.2015953/1‑94 (MQ=60)
GACTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGA > SRR4302540.6830210/1‑94 (MQ=60)
CTAACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAAC > SRR4302540.2781024/1‑94 (MQ=60)
AACCCTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGT > SRR4302540.4052891/1‑94 (MQ=60)
CTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTAT < SRR4302540.176292/94‑1 (MQ=60)
CTATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTAT < SRR4302540.3713152/94‑1 (MQ=60)
TATCAACGTTGGTATTATTTCCCGCAGGCATGGCCCTTTTAGCTCTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATC < SRR4302540.8760413/94‑1 (MQ=60)
ATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCG < SRR4302540.32762/94‑1 (MQ=60)
ATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCG < SRR4302540.32763/94‑1 (MQ=60)
ATCAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCG < SRR4302540.3821748/94‑1 (MQ=60)
CAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTT > SRR4302540.7224127/1‑94 (MQ=60)
CAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTT > SRR4302540.4294524/1‑94 (MQ=60)
CAACGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGAACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTT > SRR4302540.2955873/1‑94 (MQ=60)
CGTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTC < SRR4302540.5392492/94‑1 (MQ=60)
GTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGATAACGTGTATCGTTTTCG > SRR4302540.9076587/1‑94 (MQ=60)
GTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCG > SRR4302540.9240178/1‑94 (MQ=60)
GTTGGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCG > SRR4302540.2380904/1‑94 (MQ=60)
GGTATTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCG < SRR4302540.6463015/94‑1 (MQ=60)
ATTATTT‑CCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATA < SRR4302540.6429352/94‑1 (MQ=60)
TTATTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATA < SRR4302540.3566700/94‑1 (MQ=60)
TTTTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAG < SRR4302540.2450730/94‑1 (MQ=60)
ATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAG > SRR4302540.615783/1‑94 (MQ=60)
TTCCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCT < SRR4302540.2118723/94‑1 (MQ=60)
CCCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCA > SRR4302540.3668872/1‑94 (MQ=60)
CCGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAA > SRR4302540.895908/1‑94 (MQ=60)
CGCAGGCTTGACCCTGTTAGCACTCGGTATCAACCAGAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAAT < SRR4302540.2403251/94‑1 (MQ=60)
CGCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCAGGATAAGCTCAAT < SRR4302540.8707515/94‑1 (MQ=60)
GCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATC < SRR4302540.195615/94‑1 (MQ=60)
GCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATC > SRR4302540.8589183/1‑94 (MQ=60)
GCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATC > SRR4302540.6977780/1‑94 (MQ=60)
GCAGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATC < SRR4302540.4684216/94‑1 (MQ=60)
AGGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATCAG > SRR4302540.2118049/1‑94 (MQ=60)
AGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATCAG > SRR4302540.8012900/1‑94 (MQ=60)
GGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATCAGG < SRR4302540.7277486/94‑1 (MQ=60)
GGCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATCAGG > SRR4302540.1586533/1‑94 (MQ=60)
GACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATCAGG < SRR4302540.1523267/94‑1 (MQ=60)
ACATGACCCTTTTAGCACTCGGTATCAACCGTAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCAATCAGGC > SRR4302540.4172563/1‑94 (MQ=60)
|
ACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGC > NC_000913/1262842‑1263028
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
