Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,273,390	T→C	R81R (CGT→CGC)	ychP →	putative factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,273,390	0	T	C	100.0%	848.1 / NA	262	R81R (CGT→CGC)	ychP	putative factor
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (111/151); total (111/151)

Only 100 of 273 total aligned reads displayed.

TAATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGTGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAG  >  NC_000913/1273300‑1273479

tAATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCgg                                                                                         <  1:450060/93‑1 (MQ=255)

tAATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCgg                                                                                         <  1:377930/93‑1 (MQ=255)

 tagcAGCACGTAGAGTCCTGGCTATCCCCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGa                                                                                        <  1:7708695/90‑1 (MQ=255)

 aaTCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGa                                                                                        <  2:4075932/93‑1 (MQ=255)

  aTCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCggta                                                                                       >  1:3718162/1‑91 (MQ=255)

  aTCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGaa                                                                                       >  2:7490910/1‑93 (MQ=255)

  aTCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGaa                                                                                       <  1:8823796/93‑1 (MQ=255)

   tCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAg                                                                                      >  2:7375070/1‑93 (MQ=255)

    cAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGc                                                                                     <  2:4518193/93‑1 (MQ=255)

    cAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGc                                                                                     <  2:771824/93‑1 (MQ=255)

     aGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCt                                                                                    <  1:8186660/93‑1 (MQ=255)

     aGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCt                                                                                    >  1:9975870/1‑93 (MQ=255)

      gCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTg                                                                                   <  2:5496855/93‑1 (MQ=255)

         cGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGtt                                                                                <  1:3642078/93‑1 (MQ=255)

         cGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGtt                                                                                <  1:9017777/93‑1 (MQ=255)

         cGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGAGAACGAAGGACATTTCACCGGAAGTCGCGGAAGCTGGtt                                                                                <  2:3433069/93‑1 (MQ=255)

          gTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGttt                                                                               <  2:3997037/93‑1 (MQ=255)

          gTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGttt                                                                               >  2:8271669/1‑93 (MQ=255)

          gTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGttt                                                                               <  2:2332885/93‑1 (MQ=255)

           gagagTCCTGTCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTtg                                                                              <  1:8774265/92‑1 (MQ=255)

            agagTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTtgt                                                                             >  2:7134067/1‑93 (MQ=255)

              agTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGGCATTTCACCGGCAGTCGCGCAAGACGGTTTGTGc                                                                           >  2:1241232/1‑93 (MQ=255)

               gTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGcc                                                                          >  2:2431146/1‑93 (MQ=255)

                 ccTGGCTATCACCGTGGGGAAATGCCGGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGt                                                                        <  1:2873439/93‑1 (MQ=255)

                  cTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGtt                                                                       >  2:4376132/1‑93 (MQ=255)

                    ggCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTAc                                                                     >  2:6900268/1‑93 (MQ=255)

                    ggCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTAc                                                                     >  1:9794461/1‑93 (MQ=255)

                     gCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACa                                                                    <  2:8425472/93‑1 (MQ=255)

                         tCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGAt                                                                >  1:3063484/1‑93 (MQ=255)

                          cACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATa                                                               <  2:787783/93‑1 (MQ=255)

                           aCCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATaa                                                              <  1:6246886/93‑1 (MQ=255)

                            ccGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAAt                                                             >  2:9226086/1‑93 (MQ=255)

                             cGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATg                                                            <  1:7687873/93‑1 (MQ=255)

                              gTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGa                                                           <  1:8193437/93‑1 (MQ=255)

                               tGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGAt                                                          <  1:4571911/93‑1 (MQ=255)

                               tGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGAt                                                          <  1:8486461/93‑1 (MQ=255)

                               tGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGAt                                                          <  1:9167104/93‑1 (MQ=255)

                                ggggAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATc                                                         <  2:3379545/93‑1 (MQ=255)

                                ggggAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATc                                                         <  1:4856901/93‑1 (MQ=255)

                                ggggAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATc                                                         <  2:1425916/93‑1 (MQ=255)

                                 gggAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCg                                                        >  2:1365551/1‑93 (MQ=255)

                                    aaaTGCCAGTGGTGACGTCAAAGTCGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGTCGTTACAAGATAATGATCGTTa                                                     <  1:7815209/93‑1 (MQ=255)

                                     aaTGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAt                                                    <  2:8892885/93‑1 (MQ=255)

                                     aaTGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAt                                                    >  1:204120/1‑93 (MQ=255)

                                      aTGCCAGTGGTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAtc                                                   <  1:3479456/93‑1 (MQ=255)

                                       tGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAtct                                                  <  1:7503723/93‑1 (MQ=255)

                                        gCCAGTGTTGACGTCAAAGTGGGTAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAtctc                                                 >  2:6623929/1‑93 (MQ=255)

                                           aGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCAcc                                              >  1:1139479/1‑93 (MQ=255)

                                            gtgtTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCt                                             <  1:8345740/93‑1 (MQ=255)

                                             tgtTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTg                                            <  1:7139440/93‑1 (MQ=255)

                                               ttGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTTCCGTTACAAGATAATGATCGTTATCTCACCTggc                                          >  2:6397402/1‑92 (MQ=255)

                                               ttGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGa                                          <  2:6123031/93‑1 (MQ=255)

                                               ttGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGa                                          >  2:4955802/1‑93 (MQ=255)

                                               ttGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGa                                          <  1:4154526/93‑1 (MQ=255)

                                                tGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAg                                         >  2:2250608/1‑93 (MQ=255)

                                                   cGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCa                                      <  2:1691089/93‑1 (MQ=255)

                                                    gTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAg                                     >  1:896348/1‑93 (MQ=255)

                                                    ctCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAg                                     <  1:583497/92‑1 (MQ=255)

                                                     tCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGc                                    >  1:4615774/1‑93 (MQ=255)

                                                     tCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGc                                    >  2:4860489/1‑93 (MQ=255)

                                                     tCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGc                                    >  1:1548285/1‑93 (MQ=255)

                                                      cAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCt                                   <  1:9400679/93‑1 (MQ=255)

                                                      cAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCt                                   <  2:5966868/93‑1 (MQ=255)

                                                      cAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCt                                   <  2:1652954/93‑1 (MQ=255)

                                                       aaaGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATATTGATCGTTATCTCACCTGGAGCCAGCtt                                  >  1:521577/1‑93 (MQ=255)

                                                       aaaGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCtt                                  >  1:1304385/1‑93 (MQ=255)

                                                       aaaGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCtt                                  >  1:7333747/1‑93 (MQ=255)

                                                       aaaGTGGAAAACGGAGGGCGTTTCACCGGCCATTGCCGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCtt                                  <  1:2585479/93‑1 (MQ=255)

                                                        aaGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTg                                 <  2:9536992/93‑1 (MQ=255)

                                                        aaGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTg                                 <  2:6510078/93‑1 (MQ=255)

                                                         aGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTgg                                <  1:2333338/93‑1 (MQ=255)

                                                           tGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTc                              >  2:9062635/1‑93 (MQ=255)

                                                             gATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCtt                            >  2:5571286/1‑93 (MQ=255)

                                                               aaaCGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTAc                          <  2:2637134/92‑1 (MQ=255)

                                                                 aCGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTc                        <  1:5893535/93‑1 (MQ=255)

                                                                 aCGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGAGCGTTATCTCGCCTGGAGCCAGCTTGGTCTTACTc                        <  1:1634917/93‑1 (MQ=255)

                                                                  cGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTca                       <  1:10000578/93‑1 (MQ=255)

                                                                  cGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTca                       >  2:294653/1‑93 (MQ=255)

                                                                    aaGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTcagc                     >  1:3599880/1‑93 (MQ=255)

                                                                    aaGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTcagc                     <  2:218711/93‑1 (MQ=255)

                                                                       gACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAgg                  >  2:200371/1‑93 (MQ=255)

                                                                       gACATTTCAACGGCAGTCGCGGAAGCTTGTTTGTGGCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAgg                  <  2:9842808/93‑1 (MQ=255)

                                                                        gcATTTCCCCGGCAGTCGCGGAAGGTTGTTTGTGCCGTTACAAGATAATGATTGTTATCTCACCTGGAGCCAGCTTGGTCTTTCTCAGCAGGa                 <  2:8135506/92‑1 (MQ=255)

                                                                        aCATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGa                 <  1:6168920/93‑1 (MQ=255)

                                                                         cacttCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGCTCTTACTCAGCAGGAt                <  2:3578076/90‑1 (MQ=255)

                                                                         cATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGAt                <  1:9645779/93‑1 (MQ=255)

                                                                           tttCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATaa              <  1:5593079/93‑1 (MQ=255)

                                                                           tttCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATaa              <  1:8001886/93‑1 (MQ=255)

                                                                           tttCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATaa              >  1:6680333/1‑93 (MQ=255)

                                                                            ttCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAAt             <  2:4181915/93‑1 (MQ=255)

                                                                                  ggCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTg       >  2:2124631/1‑93 (MQ=255)

                                                                                   gCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTgg      <  1:1967563/93‑1 (MQ=255)

                                                                                   gCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTgg      <  1:9359025/93‑1 (MQ=255)

                                                                                    cAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTggg     >  1:7498531/1‑92 (MQ=255)

                                                                                    cAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGt     <  1:6570330/93‑1 (MQ=255)

                                                                                      gTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGGGa   >  2:5824987/1‑93 (MQ=255)

                                                                                      gTCGCGGAAGCTGGTTTGTGCCGTAACAAGATAATGATCGTTATTTCACCTGGAGCCAGCTTGGTCTTTTTCACCAGGATAATGGGTTGGTgg   >  2:9651023/1‑92 (MQ=255)

                                                                                       tCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAg  >  1:6756390/1‑93 (MQ=255)

                                                                                       tCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAg  >  2:8643067/1‑93 (MQ=255)

                                                                                       tCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAg  >  1:2735080/1‑93 (MQ=255)

TAATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGTGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAG  >  NC_000913/1273300‑1273479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGTTAATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGTGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAGCAAT  >  NC_000913/1273297‑1273483

AGTTAATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGC                                                                                               <  SRR4302540.8668364/94‑1 (MQ=60)

 GTTAATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCG                                                                                              <  SRR4302540.2055061/94‑1 (MQ=60)

 GTTAATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCG                                                                                              >  SRR4302540.8843204/1‑94 (MQ=60)

   TAATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGA                                                                                            <  SRR4302540.454855/94‑1 (MQ=60)

   TAATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGA                                                                                            <  SRR4302540.381837/94‑1 (MQ=60)

    tagCAGCACGTAGAGTCCTGGCTATCCCCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAA                                                                                           <  SRR4302540.7797183/91‑1 (MQ=60)

    AATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAA                                                                                           <  SRR4302540.7797182/94‑1 (MQ=60)

    AATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAA                                                                                           >  SRR4302540.5783948/1‑94 (MQ=60)

     ATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAG                                                                                          <  SRR4302540.3094397/94‑1 (MQ=60)

     ATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAG                                                                                          <  SRR4302540.8925832/94‑1 (MQ=60)

       CAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCT                                                                                        >  SRR4302540.10092210/1‑94 (MQ=60)

        AGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTG                                                                                       <  SRR4302540.8281767/94‑1 (MQ=60)

        AGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTG                                                                                       >  SRR4302540.7132425/1‑94 (MQ=60)

        AGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTG                                                                                       <  SRR4302540.8281766/94‑1 (MQ=60)

        AGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTG                                                                                       >  SRR4302540.6690666/1‑94 (MQ=60)

            CGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTT                                                                                   <  SRR4302540.9125982/94‑1 (MQ=60)

            CGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTT                                                                                   >  SRR4302540.2032085/1‑94 (MQ=60)

            CGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTT                                                                                   <  SRR4302540.3681966/94‑1 (MQ=60)

             GTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGGAGCTGGTTTG                                                                                  >  SRR4302540.2211349/1‑94 (MQ=60)

             GTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTG                                                                                  >  SRR4302540.4470658/1‑94 (MQ=60)

              GAGAGTCCTGTCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGT                                                                                 <  SRR4302540.8875912/94‑1 (MQ=60)

               AGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTG                                                                                >  SRR4302540.9848542/1‑94 (MQ=60)

                GAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGC                                                                               >  SRR4302540.1674405/1‑94 (MQ=60)

                GAGTCCTGGCTATCACCGTGGGCAAATGCCAGTGTTGACGTAAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGC                                                                               <  SRR4302540.3711763/94‑1 (MQ=60)

                  GTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCG                                                                             >  SRR4302540.3652715/1‑94 (MQ=60)

                   TCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGT                                                                            >  SRR4302540.1380574/1‑94 (MQ=60)

                    CCTGGCTATCACCGTGGGGAAATGCCGGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTT                                                                           <  SRR4302540.2904674/94‑1 (MQ=60)

                    CCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTT                                                                           >  SRR4302540.4656218/1‑94 (MQ=60)

                     CTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTA                                                                          >  SRR4302540.9631899/1‑94 (MQ=60)

                      TGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGCAGCTGGTTTGTGCCGTTAC                                                                         >  SRR4302540.3818800/1‑94 (MQ=60)

                      TGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTAC                                                                         >  SRR4302540.9909181/1‑94 (MQ=60)

                      TGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTAC                                                                         >  SRR4302540.3675290/1‑94 (MQ=60)

                      TGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTAC                                                                         >  SRR4302540.2071144/1‑94 (MQ=60)

                      TGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTAC                                                                         <  SRR4302540.6217483/94‑1 (MQ=60)

                      TGGCTAGCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTAC                                                                         <  SRR4302540.7384617/94‑1 (MQ=60)

                       GGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACA                                                                        <  SRR4302540.3816592/94‑1 (MQ=60)

                         CTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAG                                                                      <  SRR4302540.5923293/94‑1 (MQ=60)

                         CTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAG                                                                      >  SRR4302540.7605067/1‑94 (MQ=60)

                         CTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAG                                                                      <  SRR4302540.1228176/94‑1 (MQ=60)

                          TATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGA                                                                     >  SRR4302540.1047989/1‑94 (MQ=60)

                           ATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGAT                                                                    >  SRR4302540.3097093/1‑94 (MQ=60)

                           ATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGAT                                                                    >  SRR4302540.8153644/1‑94 (MQ=60)

                            TCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATA                                                                   <  SRR4302540.984718/94‑1 (MQ=60)

                            TCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATA                                                                   <  SRR4302540.4255273/94‑1 (MQ=60)

                              ACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAAT                                                                 <  SRR4302540.6316402/94‑1 (MQ=60)

                                CGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGA                                                               <  SRR4302540.8961173/94‑1 (MQ=60)

                                CGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGA                                                               <  SRR4302540.7775147/94‑1 (MQ=60)

                                CGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGA                                                               <  SRR4302540.8760251/94‑1 (MQ=60)

                                 GTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGAT                                                              <  SRR4302540.8288640/94‑1 (MQ=60)

                                 GTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGAT                                                              <  SRR4302540.8288639/94‑1 (MQ=60)

                                  TGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTTCCGTTACAAGATAATGATC                                                             >  SRR4302540.9075312/1‑94 (MQ=60)

                                  TGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATC                                                             <  SRR4302540.706822/94‑1 (MQ=60)

                                  TGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATC                                                             <  SRR4302540.9277090/94‑1 (MQ=60)

                                  TGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATC                                                             <  SRR4302540.4621255/94‑1 (MQ=60)

                                  TGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATC                                                             <  SRR4302540.8585054/94‑1 (MQ=60)

                                   GGGGAAATGCCAGTGTTGACGTGAAAGTAGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCG                                                            <  SRR4302540.3576526/94‑1 (MQ=60)

                                   GGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCG                                                            >  SRR4302540.5813711/1‑94 (MQ=60)

                                   GGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCG                                                            <  SRR4302540.4644619/94‑1 (MQ=60)

                                   GGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCG                                                            <  SRR4302540.6490856/94‑1 (MQ=60)

                                   GGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCG                                                            <  SRR4302540.4908972/94‑1 (MQ=60)

                                    GGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGT                                                           <  SRR4302540.8910228/94‑1 (MQ=60)

                                     GGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTT                                                          <  SRR4302540.4718582/94‑1 (MQ=60)

                                      GAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCACGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTA                                                         <  SRR4302540.1674500/94‑1 (MQ=60)

                                       AAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAT                                                        <  SRR4302540.7906538/94‑1 (MQ=60)

                                       AAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAT                                                        >  SRR4302540.206127/1‑94 (MQ=60)

                                       AAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTAT                                                        <  SRR4302540.1431526/94‑1 (MQ=60)

                                       AAATGCCAGTGGTGACGTCAAAGTCGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGTCGTTACAAGATAATGATCGTTAT                                                        <  SRR4302540.7906539/94‑1 (MQ=60)

                                        AATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTCCAGGATAATGATAGTTATC                                                       >  SRR4302540.3402112/1‑94 (MQ=60)

                                        AATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATC                                                       >  SRR4302540.8704027/1‑94 (MQ=60)

                                        AATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATC                                                       >  SRR4302540.2754772/1‑94 (MQ=60)

                                         ATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCT                                                      >  SRR4302540.8510908/1‑94 (MQ=60)

                                         ATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCT                                                      >  SRR4302540.9691142/1‑94 (MQ=60)

                                         ATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCT                                                      <  SRR4302540.6479212/94‑1 (MQ=60)

                                         ATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCT                                                      <  SRR4302540.627263/94‑1 (MQ=60)

                                         ATGCCAGTGGTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCT                                                      <  SRR4302540.3517339/94‑1 (MQ=60)

                                          ttccagtggtggcgtccaaggtGATAACGAAGGACAGTTCACCGGCAGTCGCGGAAGCTGGTTGGTGCCGTTACGAGATAATGATCGTTATCTC                                                     <  SRR4302540.7587582/72‑1 (MQ=60)

                                          TGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTC                                                     <  SRR4302540.7587583/94‑1 (MQ=60)

                                          AGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTC                                                     <  SRR4302540.3629047/94‑1 (MQ=60)

                                            CCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGATGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCAC                                                   <  SRR4302540.7777232/94‑1 (MQ=60)

                                             CAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACC                                                  <  SRR4302540.9200651/94‑1 (MQ=60)

                                             CAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACC                                                  >  SRR4302540.1151399/1‑94 (MQ=60)

                                              AGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCT                                                 >  SRR4302540.7908769/1‑94 (MQ=60)

                                              AGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCT                                                 >  SRR4302540.5310811/1‑94 (MQ=60)

                                              AGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCT                                                 <  SRR4302540.72314/94‑1 (MQ=60)

                                               GTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTG                                                <  SRR4302540.8442604/94‑1 (MQ=60)

                                               GTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTG                                                >  SRR4302540.9265706/1‑94 (MQ=60)

                                                TGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGG                                               <  SRR4302540.7218976/94‑1 (MQ=60)

                                                 GTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACACGATAATGATCGTTATTTCACCTGGA                                              >  SRR4302540.2795215/1‑94 (MQ=60)

                                                  TTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAG                                             <  SRR4302540.4199529/94‑1 (MQ=60)

                                                  TTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAG                                             <  SRR4302540.991762/94‑1 (MQ=60)

                                                      CGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAG                                         >  SRR4302540.905872/1‑94 (MQ=60)

                                                       GTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGCGCCAGC                                        >  SRR4302540.6240824/1‑94 (MQ=60)

                                                       GTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGC                                        >  SRR4302540.4665285/1‑94 (MQ=60)

                                                       GTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGC                                        >  SRR4302540.1565360/1‑94 (MQ=60)

                                                       GTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCACC                                        >  SRR4302540.1589684/1‑94 (MQ=60)

                                                       CTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGC                                        <  SRR4302540.589801/94‑1 (MQ=60)

                                                         CAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATATTGATCGTTATCTCACCTGGAGCCAGCTT                                      >  SRR4302540.527175/1‑94 (MQ=60)

                                                         CAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTT                                      >  SRR4302540.7415604/1‑94 (MQ=60)

                                                         CAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTT                                      >  SRR4302540.1317918/1‑94 (MQ=60)

                                                         CAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTT                                      <  SRR4302540.9512518/94‑1 (MQ=60)

                                                          AAAGTGGATAACGAAGGACATTTCATCGGCAGTCGCGTAAGCTGGTTTGTGCCGTTTCAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTG                                     <  SRR4302540.2613349/94‑1 (MQ=60)

                                                           AAGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGG                                    <  SRR4302540.3079898/94‑1 (MQ=60)

                                                            AGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGT                                   >  SRR4302540.1193792/1‑94 (MQ=60)

                                                            AGTGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGT                                   <  SRR4302540.2358479/94‑1 (MQ=60)

                                                              TGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCT                                 <  SRR4302540.7498502/94‑1 (MQ=60)

                                                              TGGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCT                                 >  SRR4302540.8917666/1‑94 (MQ=60)

                                                               GGATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTT                                <  SRR4302540.7852415/94‑1 (MQ=60)

                                                                GATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGTCCTTA                               >  SRR4302540.4603494/1‑94 (MQ=60)

                                                                 ATAACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTACCGTTACAAGATAATAATCGTTATCTCACCTGGCGCCCGCTTGGTCTTAC                              >  SRR4302540.2745813/1‑94 (MQ=60)

                                                                   AACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTC                            <  SRR4302540.9446257/94‑1 (MQ=60)

                                                                    ACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCA                           <  SRR4302540.5958632/94‑1 (MQ=60)

                                                                    ACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCA                           <  SRR4302540.9336707/94‑1 (MQ=60)

                                                                    ACGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGAGCGTTATCTCGCCTGGAGCCAGCTTGGTCTTACTCA                           <  SRR4302540.1652801/94‑1 (MQ=60)

                                                                     CGAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAG                          <  SRR4302540.10117083/94‑1 (MQ=60)

                                                                      GAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGC                         >  SRR4302540.8269107/1‑94 (MQ=60)

                                                                      GAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGC                         >  SRR4302540.3987418/1‑94 (MQ=60)

                                                                      GAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGC                         >  SRR4302540.5122114/1‑94 (MQ=60)

                                                                      GAAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGC                         >  SRR4302540.3639218/1‑94 (MQ=60)

                                                                       AAGGACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCA                        >  SRR4302540.856126/1‑94 (MQ=60)

                                                                          GACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGA                     <  SRR4302540.7606906/94‑1 (MQ=60)

                                                                           GCATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGAT                    <  SRR4302540.2358488/94‑1 (MQ=60)

                                                                           ACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGAT                    >  SRR4302540.745852/1‑94 (MQ=60)

                                                                           ACATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGAT                    <  SRR4302540.6237655/94‑1 (MQ=60)

                                                                            CATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATA                   <  SRR4302540.9759379/94‑1 (MQ=60)

                                                                             ATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAA                  >  SRR4302540.2023867/1‑94 (MQ=60)

                                                                             ATTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAA                  >  SRR4302540.6754125/1‑94 (MQ=60)

                                                                              TTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAAT                 <  SRR4302540.5654619/94‑1 (MQ=60)

                                                                              TTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAAT                 <  SRR4302540.2896000/94‑1 (MQ=60)

                                                                              TTTCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAAT                 <  SRR4302540.8095016/94‑1 (MQ=60)

                                                                                TCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGG               <  SRR4302540.3856872/94‑1 (MQ=60)

                                                                                TCACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGG               >  SRR4302540.83706/1‑94 (MQ=60)

                                                                                 CACCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATTGG              <  SRR4302540.6825244/94‑1 (MQ=60)

                                                                                   CCGGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTT            >  SRR4302540.591166/1‑94 (MQ=60)

                                                                                     GGCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGGTCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGG          <  SRR4302540.4999810/94‑1 (MQ=60)

                                                                                      GCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGT         <  SRR4302540.1988933/94‑1 (MQ=60)

                                                                                      GCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGT         <  SRR4302540.9470484/94‑1 (MQ=60)

                                                                                      GCAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGG         >  SRR4302540.7582312/1‑94 (MQ=60)

                                                                                       GAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTG        <  SRR4302540.6643131/94‑1 (MQ=60)

                                                                                       CAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTG        <  SRR4302540.9505538/94‑1 (MQ=60)

                                                                                       CAGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTG        <  SRR4302540.6643130/94‑1 (MQ=60)

                                                                                        AGTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGA       <  SRR4302540.9122866/94‑1 (MQ=60)

                                                                                         GTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAG      >  SRR4302540.4737982/1‑94 (MQ=60)

                                                                                         GTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAG      >  SRR4302540.6831045/1‑94 (MQ=60)

                                                                                         GTCGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAG      >  SRR4302540.2764608/1‑94 (MQ=60)

                                                                                           CGCGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAGCA    >  SRR4302540.3925805/1‑94 (MQ=60)

                                                                                             GGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAGCAAT  <  SRR4302540.8708530/94‑1 (MQ=60)

GGTTAATCAGCACGTAGAGTCCTGGCTATCACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGTGGAAGCTGGTTTGTGCCGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCAGCAGGATAATGGGTTGGTGAGCAAT  >  NC_000913/1273297‑1273483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`