Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,303,961	A→G	E58E (GAA→GAG)	oppF →	OppF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,303,961	0	A	G	100.0%	680.1 / NA	213	E58E (GAA→GAG)	oppF	OppF
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (92/121); total (92/121)

Only 100 of 218 total aligned reads displayed.

GTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAATCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTT  >  NC_000913/1303871‑1304050

gtgtTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTc                                                                                         <  2:145108/93‑1 (MQ=255)

gTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTc                                                                                         >  2:4389988/1‑93 (MQ=255)

gTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCAATCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTc                                                                                         >  2:1632468/1‑93 (MQ=255)

 tGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCg                                                                                        >  1:9715614/1‑93 (MQ=255)

  ggTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCgg                                                                                       <  1:2775336/93‑1 (MQ=255)

   gTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGACGGGGAAACATTAGGTGTGGTAGGGGAGTCggg                                                                                      <  2:8417340/93‑1 (MQ=255)

    ttCTGGCAACTGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGa                                                                                     <  2:1430636/93‑1 (MQ=255)

    ttCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGa                                                                                     >  2:944481/1‑93 (MQ=255)

    ttCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGa                                                                                     <  1:9872431/93‑1 (MQ=255)

    ttCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGa                                                                                     <  1:1307294/93‑1 (MQ=255)

     tCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAGCATTAGGTGTGGTAGGGGAGTCGGGAt                                                                                    <  1:8294385/93‑1 (MQ=255)

       tGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGc                                                                                  <  2:5421368/93‑1 (MQ=255)

       tGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGc                                                                                  >  2:4659015/1‑93 (MQ=255)

         gCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCgg                                                                                <  1:6842782/93‑1 (MQ=255)

           aaCCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTa                                                                              >  2:8531764/1‑93 (MQ=255)

            aCCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCCCTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTaa                                                                             <  1:2821608/93‑1 (MQ=255)

            aCCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTaa                                                                             <  1:2488373/93‑1 (MQ=255)

            aCCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTaa                                                                             >  2:8269061/1‑93 (MQ=255)

            aCCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTaa                                                                             <  2:6148772/93‑1 (MQ=255)

                ccgAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTcc                                                                         >  2:3878990/1‑93 (MQ=255)

                 cgAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGGAAGTCCa                                                                        >  1:8772758/1‑93 (MQ=255)

                  gAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAGCATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCAc                                                                       >  2:6744750/1‑93 (MQ=255)

                    aaaCGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCt                                                                     >  1:1092922/1‑93 (MQ=255)

                    aaaCGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCt                                                                     <  2:8697830/93‑1 (MQ=255)

                     aaCGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCtt                                                                    >  1:7366028/1‑93 (MQ=255)

                      aCGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCttt                                                                   <  1:1293849/93‑1 (MQ=255)

                       cGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGTGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTg                                                                  <  2:9090256/93‑1 (MQ=255)

                        gCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGc                                                                 <  2:9200356/93‑1 (MQ=255)

                         cTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCt                                                                <  2:406346/93‑1 (MQ=255)

                          tCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTc                                                               >  1:6754885/1‑93 (MQ=255)

                          tCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGT‑GGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTcg                                                              <  2:9870574/93‑1 (MQ=255)

                           cAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAGCATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTcg                                                              <  2:8937587/93‑1 (MQ=255)

                            aaaGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTcgc                                                             <  1:4470387/93‑1 (MQ=255)

                            aaaGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTcgc                                                             <  1:7927122/93‑1 (MQ=255)

                             aaGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTcgcg                                                            >  2:2984733/1‑93 (MQ=255)

                               gCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCCCCTTTGCTCGCGcc                                                          <  2:6686867/93‑1 (MQ=255)

                                 cGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCcat                                                        <  2:3022158/93‑1 (MQ=255)

                                 cGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCcat                                                        <  2:7542784/93‑1 (MQ=255)

                                  gTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCcatc                                                       >  2:5779297/1‑93 (MQ=255)

                                   tCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCcatca                                                      <  1:4563978/93‑1 (MQ=255)

                                   tCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCcatca                                                      >  2:4853894/1‑93 (MQ=255)

                                    cGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCcatcat                                                     <  1:6810989/93‑1 (MQ=255)

                                     gATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCatcatc                                                    <  1:3090379/93‑1 (MQ=255)

                                       tGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCgg                                                  <  2:5209841/93‑1 (MQ=255)

                                        ggTGTCACTCTTCGCCTGTATGAAGGGGAAGCATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGt                                                 <  2:3101548/93‑1 (MQ=255)

                                        ggTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGt                                                 <  2:7802546/93‑1 (MQ=255)

                                         gtgtCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCgggt                                                >  1:3338536/1‑91 (MQ=255)

                                         gtgtCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGtt                                                >  1:272790/1‑93 (MQ=255)

                                         gtgtCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGGCCACCTTTGCTCGCGCCATCATCGGtt                                                >  1:5850547/1‑93 (MQ=255)

                                          tgtCACTCTTCGCCTGTATGAAGGGGAAGCATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGttt                                               >  2:4962741/1‑93 (MQ=255)

                                          tgtCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGttt                                               <  1:9205211/93‑1 (MQ=255)

                                           gtCACTCTTCGCCTGTATGAAGGGGAAGCATTAGGTGTGGGAGGGGAGGCGGGATGCGGCAAGTCCACCTTTGCTCGCGCCCTCATCGGTTTg                                              >  2:8873869/1‑93 (MQ=255)

                                             cACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGt                                            >  1:4977409/1‑93 (MQ=255)

                                              aCTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGta                                           >  2:10038373/1‑92 (MQ=255)

                                              aCTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTc                                           >  2:7748304/1‑93 (MQ=255)

                                              aCTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTc                                           <  1:3652607/93‑1 (MQ=255)

                                               ctctTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCa                                          >  1:4236413/1‑93 (MQ=255)

                                                tctTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGGGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCaa                                         <  1:5782500/93‑1 (MQ=255)

                                                tctTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCaa                                         <  1:4264720/93‑1 (MQ=255)

                                                 ctTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAg                                        >  2:6562742/1‑93 (MQ=255)

                                                 ctTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAg                                        >  2:9908391/1‑93 (MQ=255)

                                                     gCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGcga                                    >  2:9932271/1‑93 (MQ=255)

                                                       cTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGcgacc                                  <  1:2220313/93‑1 (MQ=255)

                                                        tGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGcgaccg                                 >  1:6550971/1‑93 (MQ=255)

                                                        tGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGCTTGGTCAAGGcgaccg                                 >  2:6012078/1‑93 (MQ=255)

                                                         gTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGcgaccga                                >  2:1248910/1‑93 (MQ=255)

                                                          tATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGcgaccgac                               <  1:1995008/93‑1 (MQ=255)

                                                           aTGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACg                              >  2:7023085/1‑93 (MQ=255)

                                                             gAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGt                            <  1:5464348/93‑1 (MQ=255)

                                                               aGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCa                          <  2:4905019/93‑1 (MQ=255)

                                                                ggggAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCAt                         <  2:898630/93‑1 (MQ=255)

                                                                ggggAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCAt                         <  1:4644173/93‑1 (MQ=255)

                                                                 gggAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATg                        >  2:9577419/1‑93 (MQ=255)

                                                                 gggAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATg                        >  1:7521802/1‑93 (MQ=255)

                                                                  ggAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGt                       >  1:4900322/1‑93 (MQ=255)

                                                                  ggAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGt                       <  1:6068109/93‑1 (MQ=255)

                                                                    aaaCATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTg                     <  2:3514245/93‑1 (MQ=255)

                                                                    aaaCATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTg                     >  1:1133587/1‑93 (MQ=255)

                                                                      aCATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGcc                   >  2:7907705/1‑93 (MQ=255)

                                                                      aCATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGcc                   <  2:8007275/93‑1 (MQ=255)

                                                                       cATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCt                  <  1:1147604/93‑1 (MQ=255)

                                                                       cATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCt                  >  1:9754275/1‑93 (MQ=255)

                                                                       cATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCt                  <  2:6788233/93‑1 (MQ=255)

                                                                       cATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCt                  >  1:5290218/1‑93 (MQ=255)

                                                                        aTTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTg                 >  2:8317140/1‑93 (MQ=255)

                                                                         ttAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTgg                >  1:8792804/1‑93 (MQ=255)

                                                                            ggTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTa             <  2:2285095/93‑1 (MQ=255)

                                                                             gtgtGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCAGCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAg            <  2:9562401/93‑1 (MQ=255)

                                                                             gtgtGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTGTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAg            <  1:4201934/93‑1 (MQ=255)

                                                                               gtgGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGt          <  2:6965383/93‑1 (MQ=255)

                                                                                tgGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTa         <  1:2541326/93‑1 (MQ=255)

                                                                                   tAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAag      >  1:5655664/1‑93 (MQ=255)

                                                                                   tAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAag      <  2:2045244/93‑1 (MQ=255)

                                                                                     ggggAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAagag    >  1:8330962/1‑93 (MQ=255)

                                                                                     ggggAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAagag    >  2:7923537/1‑93 (MQ=255)

                                                                                     ggggAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAagag    >  2:1030731/1‑93 (MQ=255)

                                                                                      gggAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGt   <  1:4823783/93‑1 (MQ=255)

                                                                                      gggAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGt   <  1:3020919/93‑1 (MQ=255)

                                                                                      gggAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGt   <  1:7005718/93‑1 (MQ=255)

                                                                                       ggAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGtt  <  1:1248095/93‑1 (MQ=255)

GTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAATCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTT  >  NC_000913/1303871‑1304050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACAGTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAATCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTTGCTG  >  NC_000913/1303868‑1304054

ACAGTGTTTCTGGCACCCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAG                                                                                               <  SRR4302540.9678988/94‑1 (MQ=60)

ACAGTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAG                                                                                               >  SRR4302540.10112769/1‑94 (MQ=60)

ACAGTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAG                                                                                               <  SRR4302540.9678987/94‑1 (MQ=60)

ACAGTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTACGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAG                                                                                               <  SRR4302540.7246799/94‑1 (MQ=60)

 CAGTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGT                                                                                              >  SRR4302540.5061735/1‑94 (MQ=60)

 CAGTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGT                                                                                              <  SRR4302540.5660214/94‑1 (MQ=60)

  AGTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTC                                                                                             <  SRR4302540.5689334/94‑1 (MQ=60)

   GTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCG                                                                                            >  SRR4302540.9829771/1‑94 (MQ=60)

   GTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCG                                                                                            >  SRR4302540.9829770/1‑94 (MQ=60)

     GGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGG                                                                                          <  SRR4302540.2805327/94‑1 (MQ=60)

       TTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGAT                                                                                        <  SRR4302540.9987728/94‑1 (MQ=60)

       TTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGAT                                                                                        <  SRR4302540.602340/94‑1 (MQ=60)

       TTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGAT                                                                                        <  SRR4302540.7513622/94‑1 (MQ=60)

       TTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGAT                                                                                        <  SRR4302540.1320862/94‑1 (MQ=60)

       TTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGAT                                                                                        >  SRR4302540.1108314/1‑94 (MQ=60)

        TCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAGCATTAGGTGTGGTAGGGGAGTCGGGATG                                                                                       <  SRR4302540.8390703/94‑1 (MQ=60)

        TCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATG                                                                                       <  SRR4302540.1367571/94‑1 (MQ=60)

            GCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGT                                                                                   <  SRR4302540.6918579/94‑1 (MQ=60)

               ACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCCCTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAG                                                                                <  SRR4302540.2852085/94‑1 (MQ=60)

               ACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAG                                                                                <  SRR4302540.2515177/94‑1 (MQ=60)

               ACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAG                                                                                <  SRR4302540.4285269/94‑1 (MQ=60)

                  GCCGAAAACGCTCAAAGCCGTCGATGGTTTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCC                                                                             <  SRR4302540.6876496/94‑1 (MQ=60)

                  GCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCC                                                                             <  SRR4302540.6876498/94‑1 (MQ=60)

                  GCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCC                                                                             <  SRR4302540.1157271/94‑1 (MQ=60)

                   CCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGGAAGTCCA                                                                            >  SRR4302540.8874401/1‑94 (MQ=60)

                     GAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACC                                                                          >  SRR4302540.5026671/1‑94 (MQ=60)

                     GAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACC                                                                          <  SRR4302540.4205568/94‑1 (MQ=60)

                      AAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGTTAGGGGAGTCGGGATGCGGTAAGTCCACCT                                                                         <  SRR4302540.4312901/94‑1 (MQ=60)

                      AAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCT                                                                         <  SRR4302540.6396777/94‑1 (MQ=60)

                      AAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCT                                                                         >  SRR4302540.1104150/1‑94 (MQ=60)

                       AAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTT                                                                        >  SRR4302540.7448154/1‑94 (MQ=60)

                       AAACGCTCAAAGCCGTCGATGGGGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTT                                                                        >  SRR4302540.5374367/1‑94 (MQ=60)

                       AAACCCTCAAATCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAGCATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTT                                                                        <  SRR4302540.3933787/94‑1 (MQ=60)

                        AACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTT                                                                       <  SRR4302540.213078/94‑1 (MQ=60)

                         ACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTG                                                                      <  SRR4302540.1307544/94‑1 (MQ=60)

                         ACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTG                                                                      <  SRR4302540.9940639/94‑1 (MQ=60)

                         ACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTG                                                                      <  SRR4302540.1307239/94‑1 (MQ=60)

                          CGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGC                                                                     >  SRR4302540.2795292/1‑94 (MQ=60)

                           GCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCT                                                                    <  SRR4302540.8891583/94‑1 (MQ=60)

                            CTCAAAGCCGTCGATGGTGTCTCTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTC                                                                   <  SRR4302540.489417/94‑1 (MQ=60)

                            CTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTC                                                                   >  SRR4302540.6829524/1‑94 (MQ=60)

                              CAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGC                                                                 >  SRR4302540.284864/1‑94 (MQ=60)

                               AAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCG                                                                <  SRR4302540.4518864/94‑1 (MQ=60)

                               AAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCG                                                                <  SRR4302540.8019515/94‑1 (MQ=60)

                                  GCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCA                                                             >  SRR4302540.1257766/1‑94 (MQ=60)

                                    CGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATC                                                           <  SRR4302540.2832246/94‑1 (MQ=60)

                                     GTCGATGGTTGCACTCTTCGCCTGTATGAAGGGGAAGCATTAGGTTTGGTAGGGGAGTCGGAATGCGGTAAGTCCACCTTTGCTCGCGCCATCA                                                          <  SRR4302540.7928615/94‑1 (MQ=60)

                                      TCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCAT                                                         <  SRR4302540.4613270/94‑1 (MQ=60)

                                       CGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATC                                                        <  SRR4302540.7993031/94‑1 (MQ=60)

                                       CGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATC                                                        <  SRR4302540.6886353/94‑1 (MQ=60)

                                        GATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCG                                                       <  SRR4302540.3124280/94‑1 (MQ=60)

                                           tggttagCTCTTCGCCTGTATGAAGGGTAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTT                                                    <  SRR4302540.7318895/87‑1 (MQ=60)

                                           GGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTT                                                    >  SRR4302540.275474/1‑94 (MQ=60)

                                           GGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGGT                                                    >  SRR4302540.3375190/1‑94 (MQ=60)

                                           GGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGGCCACCTTTGCTCGCGCCATCATCGGTT                                                    >  SRR4302540.5915251/1‑94 (MQ=60)

                                             TGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTG                                                  >  SRR4302540.6907646/1‑94 (MQ=60)

                                             TGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTG                                                  <  SRR4302540.9315667/94‑1 (MQ=60)

                                               TCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGT                                                >  SRR4302540.5585650/1‑94 (MQ=60)

                                               TCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGT                                                >  SRR4302540.5031285/1‑94 (MQ=60)

                                                 ACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCA                                              >  SRR4302540.4282511/1‑94 (MQ=60)

                                                 ACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCA                                              <  SRR4302540.3692613/94‑1 (MQ=60)

                                                 ACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCA                                              >  SRR4302540.8518540/1‑94 (MQ=60)

                                                 ACTCTGCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCA                                              <  SRR4302540.4539517/94‑1 (MQ=60)

                                                   TCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGGGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAG                                            <  SRR4302540.5846377/94‑1 (MQ=60)

                                                   TCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAG                                            <  SRR4302540.532551/94‑1 (MQ=60)

                                                   TCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAG                                            <  SRR4302540.4311101/94‑1 (MQ=60)

                                                   TCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAG                                            >  SRR4302540.306814/1‑94 (MQ=60)

                                                     TTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGC                                          >  SRR4302540.3679518/1‑94 (MQ=60)

                                                     TTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGC                                          <  SRR4302540.5646264/94‑1 (MQ=60)

                                                      TCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCG                                         >  SRR4302540.9487062/1‑94 (MQ=60)

                                                        GCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCACGGCGAC                                       >  SRR4302540.2538415/1‑94 (MQ=60)

                                                         GCTGTATGAAGGGGAAACATTAGGTGTGGTAGGAGAGTCGGGATGCGGTAAGTCCTCCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACC                                      <  SRR4302540.678389/94‑1 (MQ=60)

                                                          CTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCG                                     >  SRR4302540.588052/1‑94 (MQ=60)

                                                          CTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCG                                     <  SRR4302540.2244256/94‑1 (MQ=60)

                                                          CTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCG                                     >  SRR4302540.6623632/1‑94 (MQ=60)

                                                           TGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGA                                    >  SRR4302540.5833716/1‑94 (MQ=60)

                                                           TGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGA                                    >  SRR4302540.4680181/1‑94 (MQ=60)

                                                             TATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACG                                  <  SRR4302540.2016629/94‑1 (MQ=60)

                                                             TATGAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACG                                  <  SRR4302540.7341241/94‑1 (MQ=60)

                                                                GAAGGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTC                               <  SRR4302540.5524491/94‑1 (MQ=60)

                                                                   GGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATG                            <  SRR4302540.4693885/94‑1 (MQ=60)

                                                                   GGGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATG                            >  SRR4302540.7605937/1‑94 (MQ=60)

                                                                    GGGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGT                           >  SRR4302540.4953040/1‑94 (MQ=60)

                                                                     GGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTT                          <  SRR4302540.6135575/94‑1 (MQ=60)

                                                                     GGAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTT                          >  SRR4302540.4867565/1‑94 (MQ=60)

                                                                      GAAACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTG                         >  SRR4302540.1145402/1‑94 (MQ=60)

                                                                         ACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCT                      >  SRR4302540.9868715/1‑94 (MQ=60)

                                                                         ACATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCT                      >  SRR4302540.5348050/1‑94 (MQ=60)

                                                                          CATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTG                     <  SRR4302540.1159575/94‑1 (MQ=60)

                                                                           ATTAGGTGTGGTAGGGGAGTCGGGNTGCGGNAAGTCNACCTTTGCTCGCGCCATCATCGGATTGGTCANGNCNACCGACGGTCNTGNTNCNTGN                    >  SRR4302540.9838086/1‑94 (MQ=60)

                                                                           ATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGG                    >  SRR4302540.8894511/1‑94 (MQ=60)

                                                                           ATTAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGG                    <  SRR4302540.10031059/94‑1 (MQ=60)

                                                                             TAGGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTT                  <  SRR4302540.84039/94‑1 (MQ=60)

                                                                               GGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAG                <  SRR4302540.1290797/94‑1 (MQ=60)

                                                                               GGTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAG                <  SRR4302540.7055386/94‑1 (MQ=60)

                                                                                GTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGG               <  SRR4302540.4247659/94‑1 (MQ=60)

                                                                                GTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGG               <  SRR4302540.2589975/94‑1 (MQ=60)

                                                                                GTGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTGTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGG               <  SRR4302540.4247658/94‑1 (MQ=60)

                                                                                 TGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGT              >  SRR4302540.8066562/1‑94 (MQ=60)

                                                                                 TGTGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGT              >  SRR4302540.9424676/1‑94 (MQ=60)

                                                                                   TGGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAA            <  SRR4302540.2568728/94‑1 (MQ=60)

                                                                                    GGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAA           >  SRR4302540.3349662/1‑94 (MQ=60)

                                                                                    GGTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAA           >  SRR4302540.1421525/1‑94 (MQ=60)

                                                                                     GTAGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAG          >  SRR4302540.5717935/1‑94 (MQ=60)

                                                                                       AGGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAG        >  SRR4302540.8427662/1‑94 (MQ=60)

                                                                                       AGGGGAGTCGGGATGCGGTAAGTCCACCTTTGATCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAACGAG        >  SRR4302540.8947189/1‑94 (MQ=60)

                                                                                        GGGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGT       >  SRR4302540.3026912/1‑94 (MQ=60)

                                                                                         GGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTT      <  SRR4302540.4875127/94‑1 (MQ=60)

                                                                                         GGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTT      <  SRR4302540.7083464/94‑1 (MQ=60)

                                                                                         GGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTT      <  SRR4302540.3054121/94‑1 (MQ=60)

                                                                                         GGGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTT      <  SRR4302540.4875433/94‑1 (MQ=60)

                                                                                         GGGAGTCGCGATGCGGTAAGTCCACCTGTGCGCGCGCCATCATCGGTTTAGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTT      <  SRR4302540.2419645/94‑1 (MQ=60)

                                                                                          GGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTTG     <  SRR4302540.1260832/94‑1 (MQ=60)

                                                                                          GGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTTG     >  SRR4302540.795140/1‑94 (MQ=60)

                                                                                          GGAGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTTG     >  SRR4302540.10094050/1‑94 (MQ=60)

                                                                                            AGTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTTGCT   <  SRR4302540.9005980/94‑1 (MQ=60)

                                                                                             GTCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTTGCTG  >  SRR4302540.3110491/1‑94 (MQ=60)

ACAGTGGTTCTGGCAACCGCCGAAAACGCTCAAAGCCGTCGATGGTGTCACTCTTCGCCTGTATGAAGGGGAAACATTAGGTGTGGTAGGGGAATCGGGATGCGGTAAGTCCACCTTTGCTCGCGCCATCATCGGTTTGGTCAAGGCGACCGACGGTCATGTTGCCTGGTTAGGTAAAGAGTTGCTG  >  NC_000913/1303868‑1304054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`