Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,316,595	(C)_6→5	coding (1218/1362 nt)	trpC ←	N‑(5‑phosphoribosyl)anthranilate isomerase and indole‑3‑glycerolphosphate synthetase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,316,590	0	C	.	100.0%	995.3 / NA	220	coding (1223/1362 nt)	trpC	N‑(5‑phosphoribosyl)anthranilate isomerase and indole‑3‑glycerolphosphate synthetase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (92/128); total (92/128)

Only 100 of 243 total aligned reads displayed.

CTTTGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGCCCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAA  >  NC_000913/1316498‑1316678

cTTTGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGc                                                                                          <  2:3522267/93‑1 (MQ=255)

  ttGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGccc                                                                                        >  1:6588091/1‑93 (MQ=255)

   tGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGcccc                                                                                       <  1:6102553/93‑1 (MQ=255)

   tGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGcccc                                                                                       <  2:6629887/93‑1 (MQ=255)

    gATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGccccc                                                                                      <  2:4025723/93‑1 (MQ=255)

      tGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGcccccgc                                                                                    <  2:141780/93‑3 (MQ=255)

      tGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGcccccgc                                                                                    >  1:5761843/1‑91 (MQ=255)

      tGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGcccccgc                                                                                    >  1:8238183/1‑91 (MQ=255)

          cGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCcagc                                                                               >  1:1739759/1‑93 (MQ=255)

          cGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCcagc                                                                               >  1:4584935/1‑93 (MQ=255)

           ggTTGCGACTCTACAGCAGAATTAAAATCAAGTCCTGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCcagca                                                                              <  2:1200087/93‑1 (MQ=255)

           ggTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCcagca                                                                              >  2:6198238/1‑93 (MQ=255)

           ggTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCcagca                                                                              <  1:7802086/93‑1 (MQ=255)

            gTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCcagcag                                                                             <  1:9400852/93‑1 (MQ=255)

            gTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCcagcag                                                                             <  1:8402699/93‑1 (MQ=255)

            gTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCcagcag                                                                             <  2:1232324/93‑1 (MQ=255)

            gTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCcagcag                                                                             >  2:2598087/1‑93 (MQ=255)

            gTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCcagcag                                                                             >  1:352323/1‑93 (MQ=255)

             ttGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCGGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGa                                                                            <  2:6460528/93‑1 (MQ=255)

             ttGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGa                                                                            <  2:5410025/93‑1 (MQ=255)

              tGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGaa                                                                           <  1:8132013/93‑1 (MQ=255)

                 gACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGt                                                                        >  1:7299732/1‑93 (MQ=255)

                 gACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGt                                                                        <  2:5089965/93‑1 (MQ=255)

                  aCTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGtt                                                                       <  1:5209311/93‑1 (MQ=255)

                   ctctACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTg                                                                      <  2:9111197/93‑1 (MQ=255)

                   ctctACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTg                                                                      >  2:8231237/1‑93 (MQ=255)

                    tctACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGc                                                                     >  1:1631005/1‑93 (MQ=255)

                    tctACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGc                                                                     >  2:2647420/1‑93 (MQ=255)

                     ctACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGcc                                                                    <  1:8501528/93‑1 (MQ=255)

                        cagcagAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAg                                                                 <  1:5760383/93‑1 (MQ=255)

                         agcagAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGc                                                                <  2:802865/93‑1 (MQ=255)

                         agcagAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGc                                                                >  1:1519661/1‑93 (MQ=255)

                           cagAATTAAAATCAAGTCCGGCTCAGCCGGTTTGTGCCGCTGCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGACAAGCGa                                                              <  1:7573897/93‑1 (MQ=255)

                           cagAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGa                                                              <  2:9603664/93‑1 (MQ=255)

                           cagAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGa                                                              <  1:3736042/93‑1 (MQ=255)

                            agAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGAt                                                             >  1:2820006/1‑93 (MQ=255)

                            agAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGAt                                                             <  1:4992193/93‑1 (MQ=255)

                              aaTTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTg                                                           >  2:5806473/1‑93 (MQ=255)

                              aaTTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTg                                                           <  1:5635277/93‑1 (MQ=255)

                               aTTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGa                                                          >  2:872344/1‑93 (MQ=255)

                                ttAAAATCAAGTCCGGGGCAGCCGGTTTGTGCCGCTTCCACGCGGTTATCTGTGCCTAAG‑ACTCCGCCAGCAGAACGTTGCCAAGCGATTGAc                                                         >  2:8282083/1‑93 (MQ=255)

                                ttAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGAc                                                         <  2:2502278/93‑1 (MQ=255)

                                ttAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGAc                                                         >  1:5830339/1‑93 (MQ=255)

                                  aaaaTCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTTCCAAGCGATTGACCa                                                       <  2:1543387/93‑1 (MQ=255)

                                      tCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTa                                                   <  2:1655044/93‑1 (MQ=255)

                                      tCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTa                                                   <  1:8597428/93‑1 (MQ=255)

                                      tCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTa                                                   >  2:4067554/1‑93 (MQ=255)

                                        aaGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAAt                                                 <  2:2237834/93‑1 (MQ=255)

                                        aaGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAAt                                                 <  1:3195357/93‑1 (MQ=255)

                                         aGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATa                                                <  2:7621176/93‑1 (MQ=255)

                                         aGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATa                                                <  2:900607/93‑1 (MQ=255)

                                         aGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATa                                                <  2:9311622/93‑1 (MQ=255)

                                         aGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATa                                                <  2:1012112/93‑1 (MQ=255)

                                          gTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAg                                               <  2:7094553/93‑1 (MQ=255)

                                          gTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAg                                               >  1:2331820/1‑93 (MQ=255)

                                           tCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGt                                              >  2:4627207/1‑93 (MQ=255)

                                            ccGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTg                                             <  1:10043233/93‑1 (MQ=255)

                                             cGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAAGGTTGCCAAGCGATTGACCATTTAATAGTgc                                            >  1:2325211/1‑92 (MQ=255)

                                             cGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGa                                            <  2:7156136/93‑1 (MQ=255)

                                             cGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGa                                            <  1:1272910/93‑1 (MQ=255)

                                               gcgcAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCTCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGAcc                                          <  2:5454080/93‑1 (MQ=255)

                                               gcgcAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACAATTTAATAGTGAcc                                          <  2:5727003/93‑1 (MQ=255)

                                                 gcAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAg                                        >  2:3683791/1‑93 (MQ=255)

                                                  cAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGt                                       <  1:9050298/93‑1 (MQ=255)

                                                  cAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGACAGAAGAACGTTGCCAAGCGCTTGACCATTTAATAGTGCCCAGt                                       >  1:933238/1‑93 (MQ=255)

                                                   aGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTc                                      <  2:8263574/93‑1 (MQ=255)

                                                   aGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTc                                      >  2:1260114/1‑93 (MQ=255)

                                                      cGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCaaa                                   <  1:4780481/93‑1 (MQ=255)

                                                       ggTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCaaaa                                  >  1:3341111/1‑93 (MQ=255)

                                                       ggTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCaaaa                                  >  1:8650194/1‑93 (MQ=255)

                                                       ggTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCaaaa                                  >  1:2467331/1‑93 (MQ=255)

                                                          ttGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGt                               <  1:2920682/93‑1 (MQ=255)

                                                           tgtgCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGtt                              >  1:3874324/1‑93 (MQ=255)

                                                           tgtgCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTAACCATTTAATAGTGACCAGTCAAAACGtt                              <  1:6548025/93‑1 (MQ=255)

                                                            gtgCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTg                             >  1:5174523/1‑93 (MQ=255)

                                                            gtgCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTg                             <  2:8462963/93‑1 (MQ=255)

                                                            gtgCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTg                             <  1:6136527/93‑1 (MQ=255)

                                                             tgCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGc                            >  1:9674093/1‑93 (MQ=255)

                                                              gCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGATCAGTCAAAACGTTGcc                           <  2:9561341/93‑1 (MQ=255)

                                                                  cTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCt                       >  2:6122154/1‑93 (MQ=255)

                                                                  cTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCt                       <  1:7457641/93‑1 (MQ=255)

                                                                  cTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCt                       >  2:3068732/1‑93 (MQ=255)

                                                                   ttCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCtt                      <  1:4713576/93‑1 (MQ=255)

                                                                   ttCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCtt                      <  2:7567712/93‑1 (MQ=255)

                                                                    tCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTc                     >  1:6893082/1‑93 (MQ=255)

                                                                    tCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTc                     >  1:6370543/1‑93 (MQ=255)

                                                                        cGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCAcc                 <  1:9851041/93‑1 (MQ=255)

                                                                          cAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCt               >  1:4427286/1‑93 (MQ=255)

                                                                          cAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCt               >  2:4406859/1‑93 (MQ=255)

                                                                           aGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTg              <  1:2165240/93‑1 (MQ=255)

                                                                            gTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTgg             <  2:7870663/93‑1 (MQ=255)

                                                                            gTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTgg             >  2:1311290/1‑93 (MQ=255)

                                                                            gTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTgg             >  1:4377061/1‑93 (MQ=255)

                                                                             ttATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGc            <  2:7589305/93‑1 (MQ=255)

                                                                             ttATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGc            <  1:1891435/93‑1 (MQ=255)

                                                                             ttATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGc            <  1:6845309/93‑1 (MQ=255)

                                                                                   gcgcCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGt      >  2:4737245/1‑93 (MQ=255)

                                                                                     gcCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCt    >  1:539699/1‑93 (MQ=255)

                                                                                     cccTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCt    <  2:7726048/92‑1 (MQ=255)

                                                                                      ccTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTa   <  1:5107762/93‑1 (MQ=255)

CTTTGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGCCCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAA  >  NC_000913/1316498‑1316678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGCCCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATTTA  >  NC_000913/1316507‑1316688

CCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGC                                                                                         >  SRR4302540.4634333/1‑94 (MQ=60)

CCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGC                                                                                         >  SRR4302540.1758574/1‑94 (MQ=60)

 CGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCA                                                                                        >  SRR4302540.6969361/1‑94 (MQ=60)

  GGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAG                                                                                       >  SRR4302540.355935/1‑94 (MQ=60)

  GGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAG                                                                                       <  SRR4302540.7893272/94‑1 (MQ=60)

  GGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAG                                                                                       >  SRR4302540.915251/1‑94 (MQ=60)

  GGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAG                                                                                       <  SRR4302540.1615874/94‑1 (MQ=60)

   GTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGA                                                                                      <  SRR4302540.8500221/94‑1 (MQ=60)

   GTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGA                                                                                      <  SRR4302540.9512691/94‑1 (MQ=60)

     TGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAAC                                                                                    <  SRR4302540.7514741/94‑1 (MQ=60)

     TGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAAC                                                                                    <  SRR4302540.8226405/94‑1 (MQ=60)

       CGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGT                                                                                  >  SRR4302540.7381213/1‑94 (MQ=60)

        GACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTT                                                                                 >  SRR4302540.8536182/1‑94 (MQ=60)

        GACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTT                                                                                 <  SRR4302540.239678/94‑1 (MQ=60)

         CCTCTACAGCAGAATTAAAATCAAGGCCGGCCCAGCCGGTTTGTCCCGCTTCCACGCAGTTATCTTCGCCTAAG‑CCCCCGCCAGCAGAACGTTG                                                                                <  SRR4302540.4990651/94‑1 (MQ=60)

         ACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTG                                                                                <  SRR4302540.5266064/94‑1 (MQ=60)

          CTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGC                                                                               >  SRR4302540.1648856/1‑94 (MQ=60)

          CTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCAAGCAGAACGTTGC                                                                               >  SRR4302540.1954992/1‑94 (MQ=60)

           TCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCC                                                                              <  SRR4302540.8935414/94‑1 (MQ=60)

           TCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCC                                                                              <  SRR4302540.5752588/94‑1 (MQ=60)

            CTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCA                                                                             >  SRR4302540.6041535/1‑94 (MQ=60)

            CTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCA                                                                             <  SRR4302540.8600316/94‑1 (MQ=60)

             TACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAA                                                                            >  SRR4302540.7310261/1‑94 (MQ=60)

             TACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAA                                                                            <  SRR4302540.4801983/94‑1 (MQ=60)

              ACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAG                                                                           >  SRR4302540.5444961/1‑94 (MQ=60)

              ACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAG                                                                           <  SRR4302540.1558354/94‑1 (MQ=60)

               CAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGC                                                                          <  SRR4302540.5823980/94‑1 (MQ=60)

               CAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGC                                                                          >  SRR4302540.1536479/1‑94 (MQ=60)

                AGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCG                                                                         <  SRR4302540.2557129/94‑1 (MQ=60)

                  CAGAATTAAAATCAAGTCCGGCTCAGCCGGTTTGTGCCGCTGCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGACAAGCGAT                                                                       <  SRR4302540.7658871/94‑1 (MQ=60)

                  CAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGAT                                                                       <  SRR4302540.9495750/94‑1 (MQ=60)

                  CAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGAT                                                                       >  SRR4302540.2850463/1‑94 (MQ=60)

                  CAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGAT                                                                       <  SRR4302540.3776803/94‑1 (MQ=60)

                  CAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGAT                                                                       <  SRR4302540.7658870/94‑1 (MQ=60)

                   AGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATT                                                                      <  SRR4302540.2290547/94‑1 (MQ=60)

                   AGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATT                                                                      <  SRR4302540.5046243/94‑1 (MQ=60)

                     AATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGA                                                                    >  SRR4302540.72507/1‑94 (MQ=60)

                     AATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGA                                                                    <  SRR4302540.5697297/94‑1 (MQ=60)

                      ATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGAC                                                                   >  SRR4302540.5894798/1‑94 (MQ=60)

                       TTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACC                                                                  <  SRR4302540.7549348/94‑1 (MQ=60)

                       TTAAAATCAAGCCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCCAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACC                                                                  <  SRR4302540.6645152/94‑1 (MQ=60)

                       ATAAAATCAAGACCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCCAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACC                                                                  <  SRR4302540.6645153/94‑1 (MQ=60)

                         AAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCAT                                                                <  SRR4302540.5358234/94‑1 (MQ=60)

                         AAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCAT                                                                <  SRR4302540.5233471/94‑1 (MQ=60)

                         AAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCAT                                                                <  SRR4302540.9553488/94‑1 (MQ=60)

                          AAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGGCCATT                                                               >  SRR4302540.2747607/1‑94 (MQ=60)

                          AAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATT                                                               >  SRR4302540.3093508/1‑94 (MQ=60)

                             TCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAA                                                            <  SRR4302540.8697357/94‑1 (MQ=60)

                             ACAAGACCGGCGCAGCCGGTTTGTGCGGCTTCCACGCAGTTATCTGCGCCGAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAA                                                            <  SRR4302540.8697358/94‑1 (MQ=60)

                              CAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAAT                                                           <  SRR4302540.5866257/94‑1 (MQ=60)

                               AAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATA                                                          <  SRR4302540.3230060/94‑1 (MQ=60)

                                AGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAG                                                         >  SRR4302540.2356946/1‑94 (MQ=60)

                                 GTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGT                                                        <  SRR4302540.1674072/94‑1 (MQ=60)

                                   CCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAAGGTTGCCAAGCGATTGACCATTTAATAGTGC                                                      >  SRR4302540.2350251/1‑94 (MQ=60)

                                   CCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGA                                                      <  SRR4302540.10159995/94‑1 (MQ=60)

                                   CCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGA                                                      >  SRR4302540.2350252/1‑94 (MQ=60)

                                    CGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGAC                                                     <  SRR4302540.1286021/94‑1 (MQ=60)

                                     GGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACC                                                    >  SRR4302540.3768717/1‑94 (MQ=60)

                                     GGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACC                                                    <  SRR4302540.8202142/94‑1 (MQ=60)

                                        GCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGT                                                 >  SRR4302540.7805960/1‑94 (MQ=60)

                                        GCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGT                                                 <  SRR4302540.5495023/94‑1 (MQ=60)

                                        GCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGT                                                 <  SRR4302540.4711460/94‑1 (MQ=60)

                                        GCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGACAGAAGAACGTTGCCAAGCGCTTGACCATTTAATAGTGCCCAGT                                                 >  SRR4302540.943033/1‑94 (MQ=60)

                                         CAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTC                                                <  SRR4302540.9158940/94‑1 (MQ=60)

                                          AGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCA                                               <  SRR4302540.10109031/94‑1 (MQ=60)

                                          AGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCA                                               >  SRR4302540.4573525/1‑94 (MQ=60)

                                             CGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAA                                            >  SRR4302540.8750680/1‑94 (MQ=60)

                                             CGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAA                                            >  SRR4302540.2493883/1‑94 (MQ=60)

                                             CGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAA                                            <  SRR4302540.4831573/94‑1 (MQ=60)

                                             CGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAA                                            >  SRR4302540.3377779/1‑94 (MQ=60)

                                             CGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAA                                            <  SRR4302540.4831572/94‑1 (MQ=60)

                                              GGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAAC                                           <  SRR4302540.5737313/94‑1 (MQ=60)

                                               GTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACG                                          <  SRR4302540.9946653/94‑1 (MQ=60)

                                               GTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACG                                          >  SRR4302540.4156630/1‑94 (MQ=60)

                                               GTTTGTGCCGCGTCAACGGAGTTATCTGCGCCTGAG‑CCCCCGCCAGCAGAACGTTGCGAAGCGATGGACCATTTAATAGTGACCAGTCAAAACG                                          <  SRR4302540.9946791/94‑1 (MQ=60)

                                                TTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGT                                         >  SRR4302540.873381/1‑94 (MQ=60)

                                                 TTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTT                                        <  SRR4302540.2952683/94‑1 (MQ=60)

                                                 TTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTT                                        >  SRR4302540.3916434/1‑94 (MQ=60)

                                                  TGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTG                                       >  SRR4302540.5230842/1‑94 (MQ=60)

                                                  TGTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTAACCATTTAATAGTGACCAGTCAAAACGTTG                                       <  SRR4302540.6620656/94‑1 (MQ=60)

                                                   GTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGC                                      <  SRR4302540.6204873/94‑1 (MQ=60)

                                                   GTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGC                                      <  SRR4302540.6259813/94‑1 (MQ=60)

                                                   GTGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGC                                      >  SRR4302540.9787924/1‑94 (MQ=60)

                                                    TGCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCC                                     <  SRR4302540.6568805/94‑1 (MQ=60)

                                                     GCCGCTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCC                                    <  SRR4302540.8519901/94‑1 (MQ=60)

                                                         CTTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTT                                <  SRR4302540.7540788/94‑1 (MQ=60)

                                                         CTCCCCCGCAGTTATCGGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTT                                <  SRR4302540.7540789/94‑1 (MQ=60)

                                                          TTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTC                               <  SRR4302540.4763937/94‑1 (MQ=60)

                                                          TTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTC                               >  SRR4302540.6969561/1‑94 (MQ=60)

                                                          TTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTC                               >  SRR4302540.6441479/1‑94 (MQ=60)

                                                          TTCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCCCTTC                               >  SRR4302540.4560177/1‑94 (MQ=60)

                                                           TCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCC                              >  SRR4302540.3911955/1‑94 (MQ=60)

                                                           TCCACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCC                              >  SRR4302540.4772890/1‑94 (MQ=60)

                                                            CCGCGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCA                             <  SRR4302540.6172912/94‑1 (MQ=60)

                                                             CACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCAC                            <  SRR4302540.3254687/94‑1 (MQ=60)

                                                             CACGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCAC                            >  SRR4302540.5217314/1‑94 (MQ=60)

                                                               CGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCC                          <  SRR4302540.5162100/94‑1 (MQ=60)

                                                               CGCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCC                          <  SRR4302540.9966181/94‑1 (MQ=60)

                                                                GCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCT                         >  SRR4302540.4475252/1‑94 (MQ=60)

                                                                GCAGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCT                         >  SRR4302540.4475251/1‑94 (MQ=60)

                                                                  AGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGG                       <  SRR4302540.13945/94‑1 (MQ=60)

                                                                  AGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGG                       <  SRR4302540.3528727/94‑1 (MQ=60)

                                                                  AGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGG                       <  SRR4302540.2957965/94‑1 (MQ=60)

                                                                  AGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGG                       >  SRR4302540.4424588/1‑94 (MQ=60)

                                                                  AGTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGG                       <  SRR4302540.2188560/94‑1 (MQ=60)

                                                                   GTTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGC                      <  SRR4302540.5178379/94‑1 (MQ=60)

                                                                    TTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCC                     <  SRR4302540.6921141/94‑1 (MQ=60)

                                                                    TTATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCC                     <  SRR4302540.1912142/94‑1 (MQ=60)

                                                                      ATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGT                   <  SRR4302540.3429597/94‑1 (MQ=60)

                                                                      ATCTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGT                   <  SRR4302540.2872924/94‑1 (MQ=60)

                                                                        CTGCGCCTAAGCCCCC‑‑GCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGT                <  SRR4302540.1849402/94‑1 (MQ=60)

                                                                        CTGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTG                 <  SRR4302540.9418422/94‑1 (MQ=60)

                                                                         TGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGT                <  SRR4302540.8665368/94‑1 (MQ=60)

                                                                         TGCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGT                >  SRR4302540.1161513/1‑94 (MQ=60)

                                                                          GCGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTC               <  SRR4302540.4407756/94‑1 (MQ=60)

                                                                           CGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCT              <  SRR4302540.6833284/94‑1 (MQ=60)

                                                                           CGCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCT              >  SRR4302540.545543/1‑94 (MQ=60)

                                                                            GCCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTA             >  SRR4302540.8311828/1‑94 (MQ=60)

                                                                             CCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAA            <  SRR4302540.5163053/94‑1 (MQ=60)

                                                                             CCTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAA            >  SRR4302540.1882580/1‑94 (MQ=60)

                                                                              CTAAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAA           >  SRR4302540.10025050/1‑94 (MQ=60)

                                                                                AAG‑CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCCCCCTGGCCGTTGTCTAAAAC         <  SRR4302540.4926705/94‑1 (MQ=60)

                                                                                    CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATA      >  SRR4302540.7258918/1‑94 (MQ=60)

                                                                                    CCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATA      <  SRR4302540.1272167/94‑1 (MQ=60)

                                                                                      CCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATT    <  SRR4302540.442092/94‑1 (MQ=60)

                                                                                       CCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATTT   <  SRR4302540.8346233/94‑1 (MQ=60)

                                                                                       CCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATTT   <  SRR4302540.1981446/94‑1 (MQ=60)

                                                                                       CCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATTT   >  SRR4302540.420645/1‑94 (MQ=60)

                                                                                       CCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATTT   <  SRR4302540.5658640/94‑1 (MQ=60)

                                                                                       CCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATTT   <  SRR4302540.6226842/94‑1 (MQ=60)

                                                                                       CCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATAT   >  SRR4302540.2461920/1‑94 (MQ=60)

                                                                                       CCGCCAGCAGAACGTTGCAAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATTT   <  SRR4302540.9069432/94‑1 (MQ=60)

                                                                                        CGCCAGCATAACGTGTCCAAGCGATTGACCATTTAATTGTGACCAGGCAACACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATTTA  <  SRR4302540.704818/94‑1 (MQ=60)

                                                                                        CGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATTTA  <  SRR4302540.5635783/94‑1 (MQ=60)

CCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCACGCAGTTATCTGCGCCTAAGCCCCCCGCCAGCAGAACGTTGCCAAGCGATTGACCATTTAATAGTGACCAGTCAAAACGTTGCCCGCTTCCACCCTGGCCGTTGTCTAAAACATATTTA  >  NC_000913/1316507‑1316688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`