Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,358,926 T→C T3A (ACC→GCC)  b1297 ← putative glutamine synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,358,9260TC100.0% 1209.9 / NA 368T3A (ACC→GCC) b1297putative glutamine synthetase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (257/111);  total (257/111)

Only 100 of 374 total aligned reads displayed.

GCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGTTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAA  >  NC_000913/1358836‑1359015
                                                                                          |                                                                                         
 cTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTc                                                                                        >  1:4024863/1‑93 (MQ=255)
 cTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTc                                                                                        >  2:954639/1‑93 (MQ=255)
  tCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTcc                                                                                       >  2:3296046/1‑93 (MQ=255)
   ccAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCa                                                                                      >  1:4790808/1‑93 (MQ=255)
    cAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCAt                                                                                     >  1:7558791/1‑93 (MQ=255)
       gTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAt                                                                                  >  1:2330336/1‑93 (MQ=255)
       gTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAt                                                                                  >  2:7081712/1‑93 (MQ=255)
        tAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAtt                                                                                 >  2:345468/1‑93 (MQ=255)
          gCGTTTCCCTCCCTGCAAAAAGCCGCTCCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAttct                                                                               <  1:1705643/93‑1 (MQ=255)
          gCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAttct                                                                               >  2:2951984/1‑93 (MQ=255)
          gCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTA‑TTCAACGATATTGGCTTCCATGAttttt                                                                              >  1:35836/1‑93 (MQ=255)
             tttCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCg                                                                            >  1:7712475/1‑93 (MQ=255)
             tttCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCg                                                                            >  2:2392345/1‑93 (MQ=255)
             attCACTTCCTGCGGAAAGGCGCTACCGCGACTCGCGTCTGACTCCTTGACCAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCg                                                                            >  2:4907731/2‑93 (MQ=255)
              ttCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGc                                                                           >  1:4573702/1‑93 (MQ=255)
               tCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGcc                                                                          >  1:1256938/1‑93 (MQ=255)
                   ttCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTCCTTCAACGATATTGGCTTCCATGCTTCTTCGCCTTTg                                                                      >  1:6189136/1‑93 (MQ=255)
                   ttCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTg                                                                      >  1:8479892/1‑93 (MQ=255)
                    tCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTgg                                                                     >  1:2904715/1‑93 (MQ=255)
                    tCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTgg                                                                     >  2:2015565/1‑93 (MQ=255)
                     ccTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGgt                                                                    >  2:8120543/1‑93 (MQ=255)
                      cTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGgtt                                                                   >  1:4619363/1‑93 (MQ=255)
                          gTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGgtttggt                                                               >  2:8201462/1‑91 (MQ=255)
                           tAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGgtttgttt                                                              >  2:1790161/1‑93 (MQ=255)
                            aaaGGCCCTCCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGtttt                                                             <  2:1655387/93‑1 (MQ=255)
                              aGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGtttttc                                                           >  2:5220066/1‑91 (MQ=255)
                              aGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTcc                                                           >  1:8913903/1‑93 (MQ=255)
                                  gcTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTc                                                       >  1:2403636/1‑93 (MQ=255)
                                   cTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCg                                                      >  1:4281941/1‑93 (MQ=255)
                                    tACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGt                                                     >  1:374578/1‑93 (MQ=255)
                                    ccccccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGt                                                     <  1:6872147/91‑1 (MQ=255)
                                    ccccccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGt                                                     <  1:4899121/91‑1 (MQ=255)
                                     aCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGtt                                                    >  2:3540430/1‑93 (MQ=255)
                                      ctccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTa                                                   <  1:3338915/91‑1 (MQ=255)
                                       cccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTAt                                                  <  2:6816207/93‑1 (MQ=255)
                                       cccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTAt                                                  >  1:5156665/1‑93 (MQ=255)
                                       cccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTAt                                                  >  1:1124024/1‑93 (MQ=255)
                                         cGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCa                                                <  1:3456789/93‑1 (MQ=255)
                                         cGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCa                                                >  2:6153049/1‑93 (MQ=255)
                                           ccTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCaaa                                              >  2:528918/1‑93 (MQ=255)
                                            ctctctTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAg                                             >  2:5418501/1‑93 (MQ=255)
                                             tctctTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGc                                            >  1:3061007/1‑93 (MQ=255)
                                              ctctTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCg                                           >  2:7555709/1‑93 (MQ=255)
                                               tcttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGt                                          >  1:8714426/1‑93 (MQ=255)
                                                cttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTa                                         >  2:8051071/1‑93 (MQ=255)
                                                 ttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaa                                        <  1:7427736/93‑1 (MQ=255)
                                                   ctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaaaa                                      <  1:7238967/93‑1 (MQ=255)
                                                    tGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAat                                     >  1:434348/1‑93 (MQ=255)
                                                    tGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAat                                     >  1:571635/1‑93 (MQ=255)
                                                     gACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTCTCAAAGCGGAAAata                                    >  1:6655015/1‑93 (MQ=255)
                                                     gACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAata                                    <  1:9477705/93‑1 (MQ=255)
                                                      aCTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAatat                                   >  2:6093550/1‑93 (MQ=255)
                                                      aCTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAatat                                   <  1:5099828/93‑1 (MQ=255)
                                                       ctgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAtata                                  <  1:1156122/93‑1 (MQ=255)
                                                       ctgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAtata                                  <  1:6997503/93‑1 (MQ=255)
                                                        tgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATaa                                 <  1:5537229/93‑1 (MQ=255)
                                                        tgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATaa                                 >  1:8747146/1‑93 (MQ=255)
                                                        tgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTATGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATaa                                 >  2:3139128/1‑93 (MQ=255)
                                                         gctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAAt                                >  1:1517294/1‑93 (MQ=255)
                                                           tgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGa                              >  1:1421153/1‑93 (MQ=255)
                                                            gAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGac                             <  1:9646172/93‑1 (MQ=255)
                                                             aaCAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGacc                            >  1:679178/1‑93 (MQ=255)
                                                             aaCAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATAacc                            >  2:5789025/1‑93 (MQ=255)
                                                               cAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGaccac                          <  1:3955087/93‑1 (MQ=255)
                                                                aaaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGaccacc                         <  2:7912581/93‑1 (MQ=255)
                                                                aaaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGaccacc                         >  2:7218123/1‑93 (MQ=255)
                                                                 aaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGAgcacca                        >  1:8850069/1‑93 (MQ=255)
                                                                 aaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGAccacca                        <  2:412368/93‑1 (MQ=255)
                                                                 aaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGAccacca                        >  2:6458137/1‑93 (MQ=255)
                                                                 aaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGAccacca                        >  2:4266397/1‑93 (MQ=255)
                                                                  aGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCAt                       >  2:9746749/1‑93 (MQ=255)
                                                                   gTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCAtt                      <  1:2719975/93‑1 (MQ=255)
                                                                   gTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCAtt                      <  2:2195649/93‑1 (MQ=255)
                                                                     tctcTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCg                    >  1:9795530/1‑93 (MQ=255)
                                                                     tctcTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCg                    >  2:2745160/1‑93 (MQ=255)
                                                                     tctcTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCg                    <  1:9058621/93‑1 (MQ=255)
                                                                       tctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGaa                  <  2:9885113/93‑1 (MQ=255)
                                                                       tctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGaa                  >  2:8426489/1‑93 (MQ=255)
                                                                        ctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAt                 >  1:1881718/1‑93 (MQ=255)
                                                                        ctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAt                 <  2:4713148/93‑1 (MQ=255)
                                                                        ctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAt                 >  1:9344850/1‑93 (MQ=255)
                                                                         tACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATc                >  2:7590962/1‑93 (MQ=255)
                                                                         tACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATc                <  1:2538925/93‑1 (MQ=255)
                                                                         tACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATc                >  1:607149/1‑93 (MQ=255)
                                                                          aCTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCt               >  2:1220297/1‑93 (MQ=255)
                                                                           cTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTg              <  2:3915764/93‑1 (MQ=255)
                                                                            ttCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGt             >  2:4217520/1‑93 (MQ=255)
                                                                             tCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTa            <  1:7910088/93‑1 (MQ=255)
                                                                             tCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTa            >  2:5589480/1‑93 (MQ=255)
                                                                               aaCGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATg          >  2:8875858/1‑93 (MQ=255)
                                                                                 cGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCa        >  1:4157475/1‑93 (MQ=255)
                                                                                 cGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCa        <  2:9212856/93‑1 (MQ=255)
                                                                                   atatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCaaa      <  2:2635074/93‑1 (MQ=255)
                                                                                   atatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCaaa      <  2:3047950/93‑1 (MQ=255)
                                                                                   atatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCaaa      >  2:9458308/1‑93 (MQ=255)
                                                                                    tatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAAc     <  2:1041210/93‑1 (MQ=255)
                                                                                    tatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAAc     >  2:1526921/1‑93 (MQ=255)
                                                                                      ttGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTa   >  2:3726111/1‑93 (MQ=255)
                                                                                      ttGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGAAGACTa   >  2:8739648/1‑93 (MQ=255)
                                                                                       tGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTaa  <  2:6212051/93‑1 (MQ=255)
                                                                                          |                                                                                         
GCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGTTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAA  >  NC_000913/1358836‑1359015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 223 total aligned reads displayed.
AGCGCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGTTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAATG  >  NC_000913/1358833‑1359018
                                                                                             |                                                                                            
AGCGCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACCAAGTTCTCTACTTCAACGATATTGGC                                                                                              >  SRR4302540.6300709/1‑94 (MQ=60)
AGCGCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGC                                                                                              >  SRR4302540.6300708/1‑94 (MQ=60)
AGCGCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGC                                                                                              >  SRR4302540.9820416/1‑94 (MQ=60)
   tcccggggtagcgtttctcttcggtgataagggggcgcCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTC                                                                                           <  SRR4302540.3489557/56‑1 (MQ=60)
   gtgccagttagtgttcctctccgaggaaaaacgccctcCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTC                                                                                           <  SRR4302540.4950097/56‑1 (MQ=60)
   GCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTC                                                                                           >  SRR4302540.4068253/1‑94 (MQ=60)
    cccctgttatcttttcccctcctgctgaagcccttcACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCC                                                                                          <  SRR4302540.2263109/58‑1 (MQ=60)
    CTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCC                                                                                          >  SRR4302540.4819279/1‑94 (MQ=60)
     TCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCA                                                                                         >  SRR4302540.8228398/1‑94 (MQ=60)
     TCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCA                                                                                         >  SRR4302540.7565505/1‑94 (MQ=60)
     TCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCA                                                                                         >  SRR4302540.2466721/1‑94 (MQ=60)
     TCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCA                                                                                         >  SRR4302540.1257065/1‑94 (MQ=60)
     TCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCA                                                                                         >  SRR4302540.4842046/1‑94 (MQ=60)
      gaacgctttttccgccttgcggatgaagggagcattCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCAT                                                                                        <  SRR4302540.5607120/58‑1 (MQ=60)
      cgtggtagtgtttcactccgtgttaacggtCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCAT                                                                                        <  SRR4302540.8839732/64‑1 (MQ=60)
      ccgggatctttttgtcttccgcgaaagcggcccccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCAT                                                                                        <  SRR4302540.2405530/59‑1 (MQ=60)
      CCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCAT                                                                                        >  SRR4302540.7643553/1‑94 (MQ=60)
       CAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATG                                                                                       >  SRR4302540.4946546/1‑94 (MQ=60)
       CAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATG                                                                                       >  SRR4302540.169544/1‑94 (MQ=60)
       CAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATG                                                                                       >  SRR4302540.635576/1‑94 (MQ=60)
        AGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGT                                                                                      >  SRR4302540.8794828/1‑94 (MQ=60)
         gtgcccttgtacttcctcgcgaaacggctcccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAT                                                                                     <  SRR4302540.9252857/62‑1 (MQ=60)
         ggtcgcttctccctccgtggaaaggcgcgcccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAT                                                                                     <  SRR4302540.5388749/62‑1 (MQ=60)
         GGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAT                                                                                     >  SRR4302540.67722/1‑94 (MQ=60)
         GGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAT                                                                                     >  SRR4302540.4869798/1‑94 (MQ=60)
         GGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAT                                                                                     >  SRR4302540.4482879/1‑94 (MQ=60)
         GGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAT                                                                                     >  SRR4302540.909181/1‑94 (MQ=60)
          GTGGCTTTTCTCTTCCTGCGTAAAGGCGCTCCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATT                                                                                    <  SRR4302540.8042534/94‑1 (MQ=60)
           TAGCTTTTCACTTCCGGCGAAAGGCCGCTCCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTC                                                                                   <  SRR4302540.2889531/94‑1 (MQ=60)
           TAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTC                                                                                   >  SRR4302540.4664597/1‑94 (MQ=60)
           TAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTC                                                                                   >  SRR4302540.2780490/1‑94 (MQ=60)
            tgtttttcctttccggcaaaggggccctgCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCT                                                                                  <  SRR4302540.2795026/65‑1 (MQ=60)
            AGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCT                                                                                  >  SRR4302540.36207/1‑94 (MQ=60)
            AGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTA‑TTCAACGATATTGGCTTCCATGATTTTT                                                                                 >  SRR4302540.36208/1‑94 (MQ=60)
              tgtttccctcccgggaaaaggccccacCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTC                                                                                <  SRR4302540.7690884/67‑1 (MQ=60)
              CGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTC                                                                                >  SRR4302540.1416187/1‑94 (MQ=60)
               GTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                               >  SRR4302540.712697/1‑94 (MQ=60)
               GTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                               >  SRR4302540.7355424/1‑94 (MQ=60)
               GTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                               >  SRR4302540.5180392/1‑94 (MQ=60)
               GTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                               >  SRR4302540.5180391/1‑94 (MQ=60)
               GTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                               >  SRR4302540.7801252/1‑94 (MQ=60)
               GTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                               >  SRR4302540.1767632/1‑94 (MQ=60)
               GTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                               >  SRR4302540.7819453/1‑94 (MQ=60)
               GTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                               >  SRR4302540.5100161/1‑94 (MQ=60)
                TTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGC                                                                              >  SRR4302540.4623050/1‑94 (MQ=60)
                 TTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCC                                                                             >  SRR4302540.1154820/1‑94 (MQ=60)
                 TTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCC                                                                             >  SRR4302540.1269819/1‑94 (MQ=60)
                 TTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCC                                                                             >  SRR4302540.1269821/1‑94 (MQ=60)
                 TTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCC                                                                             >  SRR4302540.5686246/1‑94 (MQ=60)
                   cccccctggggaaccggcccccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTT                                                                           <  SRR4302540.9272579/72‑1 (MQ=60)
                    cctcCCTGCGTAAATGCGCTCCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTT                                                                          <  SRR4302540.6909556/90‑1 (MQ=60)
                    ACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTT                                                                          >  SRR4302540.4685345/1‑94 (MQ=60)
                    ACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTT                                                                          >  SRR4302540.9088684/1‑94 (MQ=60)
                     CTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTCCTTCAACGATATTGGCTTCCATGCTTCTTCGCCTTTG                                                                         >  SRR4302540.6258044/1‑94 (MQ=60)
                     CTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTG                                                                         >  SRR4302540.5543856/1‑94 (MQ=60)
                     CTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTG                                                                         >  SRR4302540.8578390/1‑94 (MQ=60)
                      tcccgggaaaaagcccctcCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGG                                                                        <  SRR4302540.4252520/75‑1 (MQ=60)
                      TTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGG                                                                        >  SRR4302540.2936421/1‑94 (MQ=60)
                      TTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTAAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGG                                                                        >  SRR4302540.1851066/1‑94 (MQ=60)
                       TCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTAACTGCTGAACAAAGTTCTCTACTTCAACGAGATTGGCTTCCATGATTCTTCGCCTTTGGT                                                                       >  SRR4302540.8005344/1‑94 (MQ=60)
                        CCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTT                                                                      >  SRR4302540.6451478/1‑94 (MQ=60)
                        CCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTT                                                                      >  SRR4302540.7636441/1‑94 (MQ=60)
                        CCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTT                                                                      >  SRR4302540.4668889/1‑94 (MQ=60)
                         ctgagaacagccgcgACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTT                                                                     <  SRR4302540.1290646/79‑1 (MQ=60)
                            gcaagatccccccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTT                                                                  <  SRR4302540.5793809/81‑1 (MQ=60)
                             gtagggccgttcCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTT                                                                 <  SRR4302540.3510406/82‑1 (MQ=60)
                             gaaaggccgcccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTT                                                                 <  SRR4302540.7864709/82‑1 (MQ=60)
                             gaaacgccccccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTT                                                                 <  SRR4302540.7806209/82‑1 (MQ=60)
                             aaaagggcccacCCCCGCCTCTCTTCTGACGGCT‑AACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTT                                                                <  SRR4302540.6250292/82‑1 (MQ=60)
                             GTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTT                                                                 >  SRR4302540.266920/1‑94 (MQ=60)
                             GTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTT                                                                 >  SRR4302540.4547221/1‑94 (MQ=60)
                               AAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTC                                                               >  SRR4302540.9539438/1‑94 (MQ=60)
                                gcggcttcccgCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCC                                                              <  SRR4302540.5538636/83‑1 (MQ=60)
                                aggcccctcCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCC                                                              <  SRR4302540.4179250/85‑1 (MQ=60)
                                AAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCC                                                              >  SRR4302540.9017133/1‑94 (MQ=60)
                                 gggcccccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCG                                                             <  SRR4302540.5520753/86‑1 (MQ=60)
                                 gcgcgcacCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCG                                                             <  SRR4302540.5204378/86‑1 (MQ=60)
                                 AGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCG                                                             >  SRR4302540.4240468/1‑94 (MQ=60)
                                   gcgcgccgcaGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCT                                                           <  SRR4302540.7656433/84‑1 (MQ=60)
                                    CGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTC                                                          >  SRR4302540.8848478/1‑94 (MQ=60)
                                    CGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTC                                                          >  SRR4302540.2429561/1‑94 (MQ=60)
                                     GCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCG                                                         >  SRR4302540.4328513/1‑94 (MQ=60)
                                      ccgcgCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGT                                                        <  SRR4302540.2383260/89‑1 (MQ=60)
                                      cccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGT                                                        <  SRR4302540.2383261/91‑1 (MQ=60)
                                      CTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGT                                                        >  SRR4302540.378457/1‑94 (MQ=60)
                                      CTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGT                                                        >  SRR4302540.378458/1‑94 (MQ=60)
                                       ccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTT                                                       <  SRR4302540.6948319/92‑1 (MQ=60)
                                       TACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTT                                                       >  SRR4302540.8886698/1‑94 (MQ=60)
                                       TACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTT                                                       >  SRR4302540.88906/1‑94 (MQ=60)
                                        ACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTT                                                      >  SRR4302540.6109513/1‑94 (MQ=60)
                                        ACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTA                                                      >  SRR4302540.6643598/1‑94 (MQ=60)
                                         CTCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTAT                                                     <  SRR4302540.3375573/94‑1 (MQ=60)
                                         CCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTAT                                                     >  SRR4302540.5212661/1‑94 (MQ=60)
                                         CCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTAT                                                     >  SRR4302540.1135711/1‑94 (MQ=60)
                                          CCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTCCTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATC                                                    <  SRR4302540.8959062/94‑1 (MQ=60)
                                          CCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATC                                                    <  SRR4302540.8959064/94‑1 (MQ=60)
                                          CCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATC                                                    <  SRR4302540.8959063/94‑1 (MQ=60)
                                            CGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAA                                                  <  SRR4302540.1914974/94‑1 (MQ=60)
                                            CGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAA                                                  <  SRR4302540.3494415/94‑1 (MQ=60)
                                            CGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAA                                                  >  SRR4302540.1885745/1‑94 (MQ=60)
                                             GCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAA                                                 <  SRR4302540.7052003/94‑1 (MQ=60)
                                             GCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAA                                                 <  SRR4302540.4628257/94‑1 (MQ=60)
                                             GCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAA                                                 >  SRR4302540.5866838/1‑94 (MQ=60)
                                              CCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAG                                                <  SRR4302540.8184680/94‑1 (MQ=60)
                                              CCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAG                                                >  SRR4302540.9754759/1‑94 (MQ=60)
                                               CTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGC                                               <  SRR4302540.5126141/94‑1 (MQ=60)
                                               CTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGC                                               >  SRR4302540.9897028/1‑94 (MQ=60)
                                               CTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGC                                               >  SRR4302540.1147547/1‑94 (MQ=60)
                                               CTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGC                                               <  SRR4302540.2696381/94‑1 (MQ=60)
                                               CTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGC                                               >  SRR4302540.3094592/1‑94 (MQ=60)
                                               CTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGC                                               >  SRR4302540.3309123/1‑94 (MQ=60)
                                                TCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCG                                              >  SRR4302540.7758494/1‑94 (MQ=60)
                                                TCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCG                                              <  SRR4302540.7039156/94‑1 (MQ=60)
                                                TCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCG                                              >  SRR4302540.5760143/1‑94 (MQ=60)
                                                 CTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGT                                             >  SRR4302540.8815592/1‑94 (MQ=60)
                                                 CTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGT                                             >  SRR4302540.7248419/1‑94 (MQ=60)
                                                 CTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGT                                             >  SRR4302540.694263/1‑94 (MQ=60)
                                                 CTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGT                                             >  SRR4302540.3261412/1‑94 (MQ=60)
                                                   CTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAA                                           >  SRR4302540.2979043/1‑94 (MQ=60)
                                                    tgcgtaccGCTGAACAAATTTCTCTACTTCAGCGATATTGGCTTCCATGATTCTTCGCCTTTGGTCTGTTTTCCGCTCGTGATCAAAGCGTAAA                                          <  SRR4302540.7510481/86‑1 (MQ=60)
                                                    TTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAA                                          <  SRR4302540.7510482/94‑1 (MQ=60)
                                                     TCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAA                                         >  SRR4302540.3978220/1‑94 (MQ=60)
                                                      CTTACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAT                                        <  SRR4302540.5495931/94‑1 (MQ=60)
                                                      CTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAT                                        >  SRR4302540.6943304/1‑94 (MQ=60)
                                                      CTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAT                                        >  SRR4302540.438945/1‑94 (MQ=60)
                                                      CTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAT                                        <  SRR4302540.7319707/94‑1 (MQ=60)
                                                      CTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAT                                        >  SRR4302540.577842/1‑94 (MQ=60)
                                                       TGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTCTCAAAGCGGAAAATA                                       >  SRR4302540.6728617/1‑94 (MQ=60)
                                                        GACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATAT                                      <  SRR4302540.9590099/94‑1 (MQ=60)
                                                        GACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATAT                                      >  SRR4302540.3088137/1‑94 (MQ=60)
                                                         ACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATA                                     <  SRR4302540.5155020/94‑1 (MQ=60)
                                                          ttcctgaataaatTTCTCTACTTCACCGATATTGGCTTCCGTGATTCTTCGCCTTGGGTTTGTTTTCCGCTCGTTATCAAAGCTTAAAATATAA                                    <  SRR4302540.2076298/81‑1 (MQ=60)
                                                          CTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAA                                    <  SRR4302540.1168153/94‑1 (MQ=60)
                                                          CTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAA                                    >  SRR4302540.8848650/1‑94 (MQ=60)
                                                          CTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAA                                    <  SRR4302540.7075166/94‑1 (MQ=60)
                                                           TGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAAT                                   <  SRR4302540.5598216/94‑1 (MQ=60)
                                                           TGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAAT                                   <  SRR4302540.1984924/94‑1 (MQ=60)
                                                           TGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAAT                                   >  SRR4302540.1534078/1‑94 (MQ=60)
                                                            GCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATG                                  <  SRR4302540.266868/94‑1 (MQ=60)
                                                            GCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATG                                  <  SRR4302540.9092703/94‑1 (MQ=60)
                                                            GCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATG                                  <  SRR4302540.4290390/94‑1 (MQ=60)
                                                             CTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGA                                 >  SRR4302540.1436522/1‑94 (MQ=60)
                                                             CTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGA                                 >  SRR4302540.1436523/1‑94 (MQ=60)
                                                             CTGAACAAAGTTATCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCCTTGATTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGA                                 >  SRR4302540.3165390/1‑94 (MQ=60)
                                                              TGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGAC                                >  SRR4302540.3462596/1‑94 (MQ=60)
                                                               GAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACC                               <  SRR4302540.4329385/94‑1 (MQ=60)
                                                               GAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACC                               >  SRR4302540.686454/1‑94 (MQ=60)
                                                               GAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACC                               <  SRR4302540.9759773/94‑1 (MQ=60)
                                                               GAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACC                               <  SRR4302540.9759774/94‑1 (MQ=60)
                                                               GAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACC                               <  SRR4302540.9513489/94‑1 (MQ=60)
                                                                AACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCA                              <  SRR4302540.7348138/94‑1 (MQ=60)
                                                                AACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCA                              >  SRR4302540.1668334/1‑94 (MQ=60)
                                                                AACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCA                              <  SRR4302540.2460583/94‑1 (MQ=60)
                                                                 ACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCAC                             <  SRR4302540.771114/94‑1 (MQ=60)
                                                                 ACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCAC                             <  SRR4302540.976071/94‑1 (MQ=60)
                                                                  CAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACC                            <  SRR4302540.3997771/94‑1 (MQ=60)
                                                                  CAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACC                            >  SRR4302540.9771408/1‑94 (MQ=60)
                                                                   AAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGAGCACCA                           >  SRR4302540.8952452/1‑94 (MQ=60)
                                                                   AAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTATTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCCCCA                           >  SRR4302540.4061725/1‑94 (MQ=60)
                                                                    AAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCAT                          <  SRR4302540.3688985/94‑1 (MQ=60)
                                                                      GTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTC                        <  SRR4302540.2749297/94‑1 (MQ=60)
                                                                      GTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTC                        <  SRR4302540.1388815/94‑1 (MQ=60)
                                                                       TTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCG                       >  SRR4302540.9910258/1‑94 (MQ=60)
                                                                       TTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCG                       <  SRR4302540.4063719/94‑1 (MQ=60)
                                                                       TTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCG                       >  SRR4302540.4580226/1‑94 (MQ=60)
                                                                         CTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAA                     >  SRR4302540.1682091/1‑94 (MQ=60)
                                                                          TCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAT                    >  SRR4302540.9456180/1‑94 (MQ=60)
                                                                          TCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAT                    >  SRR4302540.1902323/1‑94 (MQ=60)
                                                                           CTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATC                   >  SRR4302540.613643/1‑94 (MQ=60)
                                                                            TACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCT                  <  SRR4302540.2566302/94‑1 (MQ=60)
                                                                            TACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGGTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCT                  >  SRR4302540.4360811/1‑94 (MQ=60)
                                                                             ACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTG                 <  SRR4302540.7966909/94‑1 (MQ=60)
                                                                              CTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGT                >  SRR4302540.1169466/1‑94 (MQ=60)
                                                                               TTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTA               >  SRR4302540.2435163/1‑94 (MQ=60)
                                                                               TTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTA               >  SRR4302540.4143996/1‑94 (MQ=60)
                                                                               TTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTA               >  SRR4302540.4143997/1‑94 (MQ=60)
                                                                               TTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTA               <  SRR4302540.3455944/94‑1 (MQ=60)
                                                                                TCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTAT              <  SRR4302540.3944551/94‑1 (MQ=60)
                                                                                TCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTAT              <  SRR4302540.585771/94‑1 (MQ=60)
                                                                                TCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTAT              <  SRR4302540.8002323/94‑1 (MQ=60)
                                                                                TCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTAT              <  SRR4302540.6152455/94‑1 (MQ=60)
                                                                                 CAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATG             <  SRR4302540.4067926/94‑1 (MQ=60)
                                                                                 CAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATG             <  SRR4302540.1480748/94‑1 (MQ=60)
                                                                                  AACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGC            >  SRR4302540.7451633/1‑94 (MQ=60)
                                                                                  AACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGC            <  SRR4302540.8493651/94‑1 (MQ=60)
                                                                                  AACGATATTGGCTTCCATGATCCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGC            >  SRR4302540.9268628/1‑94 (MQ=60)
                                                                                   ACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTGCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCA           <  SRR4302540.4973354/94‑1 (MQ=60)
                                                                                   ACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCA           >  SRR4302540.4202521/1‑94 (MQ=60)
                                                                                   ACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCA           >  SRR4302540.9557715/1‑94 (MQ=60)
                                                                                   ACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCA           >  SRR4302540.3621620/1‑94 (MQ=60)
                                                                                   ACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCA           >  SRR4302540.8681731/1‑94 (MQ=60)
                                                                                   ACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCA           >  SRR4302540.3621619/1‑94 (MQ=60)
                                                                                    CGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAA          >  SRR4302540.9215269/1‑94 (MQ=60)
                                                                                    CGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAA          >  SRR4302540.2204631/1‑94 (MQ=60)
                                                                                      ATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAAC        <  SRR4302540.485404/94‑1 (MQ=60)
                                                                                      ATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAAC        >  SRR4302540.2396040/1‑94 (MQ=60)
                                                                                      ATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAAC        >  SRR4302540.6751128/1‑94 (MQ=60)
                                                                                           GGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAAT   <  SRR4302540.4383139/94‑1 (MQ=60)
                                                                                           GGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAAT   <  SRR4302540.891816/94‑1 (MQ=60)
                                                                                            GCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAATG  >  SRR4302540.5065296/1‑94 (MQ=60)
                                                                                             |                                                                                            
AGCGCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGTTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAATG  >  NC_000913/1358833‑1359018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑