Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,358,926	T→C	T3A (ACC→GCC)	b1297 ←	putative glutamine synthetase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,358,926	0	T	C	100.0%	726.9 / NA	220	T3A (ACC→GCC)	b1297	putative glutamine synthetase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (142/78); total (142/78)

Only 100 of 225 total aligned reads displayed.

GCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGTTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAA  >  NC_000913/1358836‑1359015

gcTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGctt                                                                                         >  1:1573387/1‑93 (MQ=255)

 cTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTCGCTTc                                                                                        >  1:123168/1‑93 (MQ=255)

  tCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTcc                                                                                       >  2:5060669/1‑93 (MQ=255)

   ccAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCa                                                                                      >  1:3517071/1‑93 (MQ=255)

      ggTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGa                                                                                   >  2:643222/1‑93 (MQ=255)

      ggTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGa                                                                                   >  2:5802861/1‑93 (MQ=255)

      ggTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGa                                                                                   >  1:2064456/1‑93 (MQ=255)

         aGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAttc                                                                                >  1:626585/1‑93 (MQ=255)

          gCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAttct                                                                               >  1:1152575/1‑93 (MQ=255)

            gTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAttcttc                                                                             >  2:749088/1‑93 (MQ=255)

             tttCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTTCATGATTCTTCg                                                                            >  2:2121746/1‑93 (MQ=255)

             tttCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCg                                                                            >  2:1397945/1‑93 (MQ=255)

              ttCTCTCCCTGCGTAAGGGCCCTCCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGc                                                                           <  1:6112168/93‑1 (MQ=255)

               tCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGcc                                                                          >  2:4669684/1‑93 (MQ=255)

                cccTTCCTGCGAAAGGCCCCCCCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCt                                                                         <  2:2791214/91‑1 (MQ=255)

                 ccTTCCTGGAAAAAGGCCCTCCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCtt                                                                        <  2:483323/92‑1 (MQ=255)

                   ttCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTg                                                                      >  2:5371914/1‑93 (MQ=255)

                   ttCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTg                                                                      >  2:1575639/1‑93 (MQ=255)

                   ttCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTg                                                                      >  1:516044/1‑93 (MQ=255)

                     ccTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGgt                                                                    >  2:1234180/1‑93 (MQ=255)

                       tGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGgttt                                                                  >  1:1593693/1‑93 (MQ=255)

                       cgCGTAAAGGCGCTACCTCGCCTCTCTTCTGAGTGCTGAACAAAGTTCTCTACCTCAACGATATTGGCTTGCATGATTCTTCGCCTTTGgttt                                                                  >  2:3070824/2‑93 (MQ=255)

                           tAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGgtttgttt                                                              >  1:650785/1‑93 (MQ=255)

                             aaGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTc                                                            >  2:2269477/1‑93 (MQ=255)

                             aaGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTc                                                            >  2:4087406/1‑93 (MQ=255)

                               ggCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCg                                                          >  2:4542848/1‑93 (MQ=255)

                                gcgcTCCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGc                                                         <  2:1734607/93‑1 (MQ=255)

                                    tACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGt                                                     >  1:5634839/1‑93 (MQ=255)

                                    tACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGt                                                     >  2:5194348/1‑93 (MQ=255)

                                       cccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTAt                                                  <  1:2507583/93‑1 (MQ=255)

                                        ccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATc                                                 >  1:3877834/1‑93 (MQ=255)

                                         cGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCa                                                <  2:1900765/93‑1 (MQ=255)

                                          gCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCaa                                               >  2:4210403/1‑93 (MQ=255)

                                          gCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCaa                                               <  1:2766847/93‑1 (MQ=255)

                                          gCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCaa                                               <  2:852490/93‑1 (MQ=255)

                                           ccTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCaaa                                              <  1:57018/93‑1 (MQ=255)

                                            ctctctTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAg                                             <  2:1128451/93‑1 (MQ=255)

                                            ctctctTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAATCTTCGCCTTTGGTTTGTTTTTCGCTCGTTATCAAAg                                             >  1:3346742/1‑93 (MQ=255)

                                             tctctTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGc                                            >  2:957114/1‑93 (MQ=255)

                                             tctctTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGc                                            >  1:4243148/1‑93 (MQ=255)

                                             tctctTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGc                                            >  1:3799607/1‑93 (MQ=255)

                                              ctctTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCg                                           <  2:4489052/93‑1 (MQ=255)

                                              ctctTCTCACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCg                                           >  1:5974587/1‑93 (MQ=255)

                                               tcttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGt                                          <  2:5507202/93‑1 (MQ=255)

                                                cttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTa                                         >  1:10686/1‑93 (MQ=255)

                                                 ttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaa                                        >  2:5639630/1‑93 (MQ=255)

                                                 ttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaa                                        >  2:4330130/1‑93 (MQ=255)

                                                  tctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaaa                                       <  2:2404228/93‑1 (MQ=255)

                                                   ctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaaaa                                      >  1:583560/1‑93 (MQ=255)

                                                   ctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaaaa                                      <  1:5755750/93‑1 (MQ=255)

                                                   ctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaaaa                                      <  2:343306/93‑1 (MQ=255)

                                                     gACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAata                                    >  1:1027732/1‑93 (MQ=255)

                                                     gACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAata                                    <  1:5915841/93‑1 (MQ=255)

                                                      aCTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAatat                                   <  1:3560125/93‑1 (MQ=255)

                                                      aCTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAataa                                   >  1:4890143/1‑92 (MQ=255)

                                                       ctgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAtata                                  >  2:2648951/1‑93 (MQ=255)

                                                       ctgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAtata                                  >  2:1013535/1‑93 (MQ=255)

                                                        tgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATaa                                 >  1:188755/1‑93 (MQ=255)

                                                         gctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAAt                                >  2:5548548/1‑93 (MQ=255)

                                                         gctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAAt                                >  2:2920077/1‑93 (MQ=255)

                                                             aaCAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGacc                            <  2:779424/93‑1 (MQ=255)

                                                             aaCAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGacc                            >  2:1342842/1‑93 (MQ=255)

                                                               cAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGaccac                          >  1:724141/1‑93 (MQ=255)

                                                                aaaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGaccacc                         <  1:910234/93‑1 (MQ=255)

                                                                 aaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGAccacca                        <  1:14768/93‑1 (MQ=255)

                                                                   gTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCAtt                      <  1:1405885/93‑1 (MQ=255)

                                                                   gTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCAACAtt                      <  2:33163/93‑1 (MQ=255)

                                                                    ttCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTc                     >  1:4692814/1‑93 (MQ=255)

                                                                     tctcTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCg                    >  1:237041/1‑93 (MQ=255)

                                                                       tctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGaa                  >  2:6169401/1‑93 (MQ=255)

                                                                       tctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGaa                  <  1:3200155/93‑1 (MQ=255)

                                                                        ctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAt                 >  1:4180465/1‑93 (MQ=255)

                                                                        ctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAt                 >  1:5045568/1‑93 (MQ=255)

                                                                        ctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAt                 >  1:295922/1‑93 (MQ=255)

                                                                         tACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATc                >  1:5531428/1‑93 (MQ=255)

                                                                         tACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATc                <  2:5703904/93‑1 (MQ=255)

                                                                         tACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATc                <  1:1647052/93‑1 (MQ=255)

                                                                          aCTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCt               >  1:2801370/1‑93 (MQ=255)

                                                                            ttCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGt             >  2:3514388/1‑93 (MQ=255)

                                                                            ttCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGt             >  2:1649612/1‑93 (MQ=255)

                                                                            ttCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGt             <  1:4448409/93‑1 (MQ=255)

                                                                            ttCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGt             >  1:5275515/1‑93 (MQ=255)

                                                                             tCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTa            <  1:3955610/93‑1 (MQ=255)

                                                                               aaCGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATg          >  1:4544812/1‑93 (MQ=255)

                                                                               aaCGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATg          <  1:4278397/93‑1 (MQ=255)

                                                                               aaCGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATg          >  1:3724245/1‑93 (MQ=255)

                                                                                aCGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGc         <  2:3928488/93‑1 (MQ=255)

                                                                                aCGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGc         >  2:3526323/1‑93 (MQ=255)

                                                                                aCGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGc         <  1:216758/93‑1 (MQ=255)

                                                                                aCGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGc         <  1:4196798/93‑1 (MQ=255)

                                                                                  gATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCaa       >  1:1863141/1‑93 (MQ=255)

                                                                                   atatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGGATCTGTATGCaaa      >  2:257351/1‑93 (MQ=255)

                                                                                   atatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCaaa      >  2:2646389/1‑93 (MQ=255)

                                                                                   atatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCaaa      >  1:1916224/1‑93 (MQ=255)

                                                                                      ttGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTa   >  2:6069362/1‑93 (MQ=255)

                                                                                      ttGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTa   <  2:2031745/93‑1 (MQ=255)

                                                                                      ttGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTa   <  1:2693400/93‑1 (MQ=255)

                                                                                      ttGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTa   >  2:3270617/1‑93 (MQ=255)

                                                                                      ttGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTa   >  1:5249450/1‑93 (MQ=255)

                                                                                       tGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTaa  <  2:6201374/93‑1 (MQ=255)

GCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGTTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAA  >  NC_000913/1358836‑1359015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCGCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGTTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAATGT  >  NC_000913/1358833‑1359019

AGCGCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGC                                                                                               >  SRR4302533.2044282/1‑94 (MQ=60)

AGCGCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGC                                                                                               >  SRR4302533.3109687/1‑94 (MQ=60)

 gcgcgcgggttagcttcccccttcctgggaacgtgccCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCT                                                                                              <  SRR4302533.2921754/57‑1 (MQ=60)

  CGCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTT                                                                                             >  SRR4302533.1582861/1‑94 (MQ=60)

  CGCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTT                                                                                             >  SRR4302533.3794644/1‑94 (MQ=60)

   GCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTCGCTTC                                                                                            >  SRR4302533.123942/1‑94 (MQ=60)

     ccgaggtagtttttcccttcctgcgaaagcgcccccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCA                                                                                          <  SRR4302533.995392/58‑1 (MQ=60)

     cacagctgtctgtccccttctggcaaaaggccgcccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCA                                                                                          <  SRR4302533.3179023/58‑1 (MQ=60)

     TCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCA                                                                                          >  SRR4302533.3538753/1‑94 (MQ=60)

     TCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCA                                                                                          >  SRR4302533.3714201/1‑94 (MQ=60)

      ccagggtgctttcctcctcgtgagaaaggccgcccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCAT                                                                                         <  SRR4302533.3150497/59‑1 (MQ=60)

      CCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCAT                                                                                         >  SRR4302533.6246354/1‑94 (MQ=60)

       cgttttcttttactctcccgcaaaagcgcccgccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATG                                                                                        <  SRR4302533.1942529/60‑1 (MQ=60)

        AGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGA                                                                                       >  SRR4302533.608343/1‑94 (MQ=60)

        AGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGA                                                                                       >  SRR4302533.2077181/1‑94 (MQ=60)

        AGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGA                                                                                       >  SRR4302533.1840819/1‑94 (MQ=60)

         ggtcgttttcctctccctgaaaaaggccccccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAT                                                                                      <  SRR4302533.1397808/62‑1 (MQ=60)

          GTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATT                                                                                     >  SRR4302533.1874558/1‑94 (MQ=60)

           TAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTC                                                                                    >  SRR4302533.630266/1‑94 (MQ=60)

            AGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCT                                                                                   >  SRR4302533.1159478/1‑94 (MQ=60)

             tcttttcccttctggcaaaaggcccctcCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTT                                                                                  <  SRR4302533.5215320/66‑1 (MQ=60)

             tcgttcctcttccggagaaagccctccACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTT                                                                                  <  SRR4302533.175361/67‑1 (MQ=60)

               ttttctcttccttaatacacgtgcccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                                <  SRR4302533.2814013/68‑1 (MQ=60)

               tttcctctcccgccgaaagccccctcCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                                <  SRR4302533.1082752/68‑1 (MQ=60)

               tttccattccctgcgaaaagcccctcCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                                <  SRR4302533.4156025/68‑1 (MQ=60)

               ttgccatctcctgcaaaaacgcgcccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                                <  SRR4302533.3714740/68‑1 (MQ=60)

               GTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCG                                                                                >  SRR4302533.6303476/1‑94 (MQ=60)

                 TTCTCTCCCTGCGTAAGGGCCCTCCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCC                                                                              <  SRR4302533.6149059/94‑1 (MQ=60)

                 TTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCC                                                                              >  SRR4302533.73057/1‑94 (MQ=60)

                  TCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCT                                                                             >  SRR4302533.2913154/1‑94 (MQ=60)

                  TCACTCCCTGCGAAAAGGCCCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCT                                                                             <  SRR4302533.1034394/94‑1 (MQ=60)

                   CACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTT                                                                            >  SRR4302533.3200708/1‑94 (MQ=60)

                    acttcctgaaaaaagccccccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTT                                                                           <  SRR4302533.4310419/73‑1 (MQ=60)

                     CTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTG                                                                          >  SRR4302533.588992/1‑94 (MQ=60)

                     CTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTG                                                                          >  SRR4302533.519107/1‑94 (MQ=60)

                         CTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTT                                                                      >  SRR4302533.586313/1‑94 (MQ=60)

                         CTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTT                                                                      >  SRR4302533.1473093/1‑94 (MQ=60)

                         CTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTT                                                                      >  SRR4302533.1603337/1‑94 (MQ=60)

                          tccgaaacgccgctcCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTG                                                                     <  SRR4302533.209051/79‑1 (MQ=60)

                          TGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTG                                                                     >  SRR4302533.2110936/1‑94 (MQ=60)

                            cgtaagcgcccccCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTT                                                                   <  SRR4302533.3585730/81‑1 (MQ=60)

                            CGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTT                                                                   >  SRR4302533.3927016/1‑94 (MQ=60)

                            CGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCACTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTT                                                                   >  SRR4302533.4112237/1‑94 (MQ=60)

                             GTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTT                                                                  >  SRR4302533.654633/1‑94 (MQ=60)

                               AAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTC                                                                >  SRR4302533.5635814/1‑94 (MQ=60)

                                AAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCC                                                               >  SRR4302533.1322864/1‑94 (MQ=60)

                                 AGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCG                                                              >  SRR4302533.4415772/1‑94 (MQ=60)

                                    CGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTC                                                           >  SRR4302533.4335608/1‑94 (MQ=60)

                                      CTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGT                                                         >  SRR4302533.5668914/1‑94 (MQ=60)

                                       TACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTT                                                        >  SRR4302533.3568119/1‑94 (MQ=60)

                                        CCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTA                                                       <  SRR4302533.278111/94‑1 (MQ=60)

                                        ACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTA                                                       >  SRR4302533.269467/1‑94 (MQ=60)

                                          CCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATC                                                     >  SRR4302533.3901501/1‑94 (MQ=60)

                                          CCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATC                                                     <  SRR4302533.2523038/94‑1 (MQ=60)

                                            CGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTTCGCTCGTTATCAA                                                   >  SRR4302533.3871750/1‑94 (MQ=60)

                                             GCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAA                                                  <  SRR4302533.2783819/94‑1 (MQ=60)

                                             GCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAA                                                  <  SRR4302533.1369830/94‑1 (MQ=60)

                                              CCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAG                                                 <  SRR4302533.57395/94‑1 (MQ=60)

                                              CCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAATCTTCGCCTTTGGTTTGTTTTTCGCTCGTTATCAAAG                                                 >  SRR4302533.3367421/1‑94 (MQ=60)

                                               CTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGC                                                >  SRR4302533.5780257/1‑94 (MQ=60)

                                               CTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGC                                                >  SRR4302533.4268769/1‑94 (MQ=60)

                                               CTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGC                                                >  SRR4302533.3822866/1‑94 (MQ=60)

                                                TCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCG                                               <  SRR4302533.466600/94‑1 (MQ=60)

                                                TCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCG                                               >  SRR4302533.5555486/1‑94 (MQ=60)

                                                TCTCTTCTCACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCG                                               >  SRR4302533.6010750/1‑94 (MQ=60)

                                                  TCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTA                                             >  SRR4302533.10772/1‑94 (MQ=60)

                                                   CTTCTGACTGCTGGACAAATTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAA                                            <  SRR4302533.4213453/94‑1 (MQ=60)

                                                   CTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAA                                            <  SRR4302533.1943486/94‑1 (MQ=60)

                                                   CTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAA                                            >  SRR4302533.56849/1‑94 (MQ=60)

                                                   CTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAA                                            >  SRR4302533.1902216/1‑94 (MQ=60)

                                                   CTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAA                                            >  SRR4302533.164426/1‑94 (MQ=60)

                                                     TCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAA                                          >  SRR4302533.587002/1‑94 (MQ=60)

                                                     TCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAA                                          <  SRR4302533.704424/94‑1 (MQ=60)

                                                      CTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAT                                         <  SRR4302533.5790484/94‑1 (MQ=60)

                                                       TGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATA                                        >  SRR4302533.1033769/1‑94 (MQ=60)

                                                       TGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATA                                        <  SRR4302533.2977697/94‑1 (MQ=60)

                                                        GACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATAT                                       <  SRR4302533.5951595/94‑1 (MQ=60)

                                                        GACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATAA                                       >  SRR4302533.4919772/1‑94 (MQ=60)

                                                         ACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATA                                      <  SRR4302533.3582059/94‑1 (MQ=60)

                                                         ACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATA                                      >  SRR4302533.1097828/1‑94 (MQ=60)

                                                         ACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATA                                      >  SRR4302533.2555459/1‑94 (MQ=60)

                                                          CTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAA                                     <  SRR4302533.4019574/94‑1 (MQ=60)

                                                          CTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAA                                     >  SRR4302533.189931/1‑94 (MQ=60)

                                                           TGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAAT                                    <  SRR4302533.473874/94‑1 (MQ=60)

                                                           TGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAAT                                    <  SRR4302533.498881/94‑1 (MQ=60)

                                                            GCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATG                                   <  SRR4302533.5992660/94‑1 (MQ=60)

                                                               GAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACC                                >  SRR4302533.2435412/1‑94 (MQ=60)

                                                                AACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCA                               >  SRR4302533.2794083/1‑94 (MQ=60)

                                                                 ACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCAC                              >  SRR4302533.728421/1‑94 (MQ=60)

                                                                 ACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCAC                              <  SRR4302533.3452874/94‑1 (MQ=60)

                                                                  CAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACC                             <  SRR4302533.4241601/94‑1 (MQ=60)

                                                                   AAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCA                            <  SRR4302533.5157925/94‑1 (MQ=60)

                                                                   AAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCA                            <  SRR4302533.915574/94‑1 (MQ=60)

                                                                   AAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCA                            >  SRR4302533.5407405/1‑94 (MQ=60)

                                                                    AAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCAT                           <  SRR4302533.14873/94‑1 (MQ=60)

                                                                      GTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTC                         <  SRR4302533.1414388/94‑1 (MQ=60)

                                                                      GTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTC                         >  SRR4302533.4721254/1‑94 (MQ=60)

                                                                       TTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCG                        >  SRR4302533.238507/1‑94 (MQ=60)

                                                                          TCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAT                     <  SRR4302533.5833450/94‑1 (MQ=60)

                                                                          TCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAT                     >  SRR4302533.5076094/1‑94 (MQ=60)

                                                                          TCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAT                     >  SRR4302533.297729/1‑94 (MQ=60)

                                                                          TCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAT                     >  SRR4302533.4205783/1‑94 (MQ=60)

                                                                          TCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAAT                     <  SRR4302533.3219847/94‑1 (MQ=60)

                                                                           CTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATC                    >  SRR4302533.4989245/1‑94 (MQ=60)

                                                                           CTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATC                    >  SRR4302533.5564823/1‑94 (MQ=60)

                                                                            TACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCT                   >  SRR4302533.1161050/1‑94 (MQ=60)

                                                                            TACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCT                   >  SRR4302533.2818603/1‑94 (MQ=60)

                                                                            TACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCT                   <  SRR4302533.5297277/94‑1 (MQ=60)

                                                                            TACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCT                   <  SRR4302533.1657026/94‑1 (MQ=60)

                                                                             ACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTG                  >  SRR4302533.3699251/1‑94 (MQ=60)

                                                                              CTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGT                 >  SRR4302533.5307145/1‑94 (MQ=60)

                                                                              CTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGT                 >  SRR4302533.3314101/1‑94 (MQ=60)

                                                                              CTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGT                 >  SRR4302533.6254185/1‑94 (MQ=60)

                                                                              CTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGT                 <  SRR4302533.1614886/94‑1 (MQ=60)

                                                                               TTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTA                <  SRR4302533.4475313/94‑1 (MQ=60)

                                                                                TCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTAT               <  SRR4302533.3979724/94‑1 (MQ=60)

                                                                                 CAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATG              >  SRR4302533.3747094/1‑94 (MQ=60)

                                                                                 CAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATG              >  SRR4302533.5200882/1‑94 (MQ=60)

                                                                                 CAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATG              >  SRR4302533.4572336/1‑94 (MQ=60)

                                                                                  AACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGC             >  SRR4302533.1530272/1‑94 (MQ=60)

                                                                                  AACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGC             >  SRR4302533.1599893/1‑94 (MQ=60)

                                                                                  AACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGC             <  SRR4302533.4304126/94‑1 (MQ=60)

                                                                                   ACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCA            <  SRR4302533.4222205/94‑1 (MQ=60)

                                                                                   ACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCA            <  SRR4302533.218118/94‑1 (MQ=60)

                                                                                   ACGATATTGGCTTCCATGATTCTTCGCCTTTGGTATGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCA            <  SRR4302533.4554916/94‑1 (MQ=60)

                                                                                    CGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAA           >  SRR4302533.1874505/1‑94 (MQ=60)

                                                                                     GATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAA          >  SRR4302533.1927922/1‑94 (MQ=60)

                                                                                      ATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAAC         >  SRR4302533.4301623/1‑94 (MQ=60)

                                                                                      ATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAAC         <  SRR4302533.2069780/94‑1 (MQ=60)

                                                                                        ATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTA       >  SRR4302533.5281000/1‑94 (MQ=60)

                                                                                         TTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAA      <  SRR4302533.2709902/94‑1 (MQ=60)

                                                                                         TTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAA      >  SRR4302533.2310826/1‑94 (MQ=60)

                                                                                          TGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAA     >  SRR4302533.1969192/1‑94 (MQ=60)

                                                                                          TGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAA     >  SRR4302533.4794724/1‑94 (MQ=60)

                                                                                           GGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAAT    <  SRR4302533.3111152/94‑1 (MQ=60)

                                                                                           GGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAAT    <  SRR4302533.448926/94‑1 (MQ=60)

                                                                                             CTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAATGT  >  SRR4302533.2109993/1‑94 (MQ=60)

                                                                                             CTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAATGT  >  SRR4302533.3611335/1‑94 (MQ=60)

                                                                                             CTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAATGT  >  SRR4302533.5175457/1‑94 (MQ=60)

                                                                                             CTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAATGT  >  SRR4302533.5234242/1‑94 (MQ=60)

AGCGCTCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGTTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAAATGT  >  NC_000913/1358833‑1359019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`