Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,419,658 |
C→T |
P172P (CCC→CCT) |
ydaU → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,419,658 | 0 | C | T | 100.0%
| 855.7
/ NA
| 234 | P172P (CCC→CCT) | ydaU | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (124/110); total (124/110) |
Only 100 of 255 total aligned reads displayed.
TGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTG > NC_000913/1419568‑1419747
|
tgtTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGAtcctcc < 2:7082053/93‑1 (MQ=255)
tgtTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGAtcctcc < 1:2294254/93‑1 (MQ=255)
gtTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATcctccc < 1:7619370/93‑1 (MQ=255)
ttCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATcctcccc > 1:3976584/1‑93 (MQ=255)
ttCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATcctcccc < 1:6220181/93‑1 (MQ=255)
ttCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATcctcccc < 2:9135475/93‑1 (MQ=255)
tCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCt > 1:5034774/1‑93 (MQ=255)
tCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCt > 2:8418971/1‑93 (MQ=255)
tCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCt > 2:2837785/1‑93 (MQ=255)
cAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTa > 2:4508664/1‑93 (MQ=255)
aaaCAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTaa < 2:2449471/93‑1 (MQ=255)
aCAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑t > 2:6507449/1‑93 (MQ=255)
cAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACCGATCCTCCCCTAAA‑T‑c < 2:6706491/93‑1 (MQ=255)
gATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑ccc < 2:9541346/93‑1 (MQ=255)
tGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑ccccc > 2:4766175/1‑93 (MQ=255)
gTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑cccccc > 2:2314822/1‑93 (MQ=255)
gTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑cccccc < 1:8298222/93‑1 (MQ=255)
ttGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑ccccccc < 1:8112399/93‑1 (MQ=255)
tGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCg < 2:6401772/93‑1 (MQ=255)
gAAGTGGTGTTTTAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCgg < 2:9742909/93‑1 (MQ=255)
gAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCgg > 1:4479964/1‑93 (MQ=255)
gAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCgg > 2:3318707/1‑93 (MQ=255)
gAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCgg > 1:8531196/1‑93 (MQ=255)
gAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGAGCCTCCCCTAAA‑T‑CCCCCCCgg < 2:1558896/93‑1 (MQ=255)
aaGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCcgg < 1:3155427/93‑1 (MQ=255)
ggtgTTTGAACGTGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGaa > 1:9395638/1‑93 (MQ=255)
ggtgTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGaa > 1:6598321/1‑93 (MQ=255)
gtTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCg < 2:1041017/93‑1 (MQ=255)
gtTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCg > 2:5003206/1‑93 (MQ=255)
gtTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCg > 1:3529411/1‑93 (MQ=255)
tttGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGa < 2:5308036/93‑1 (MQ=255)
ttGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAg > 2:77583/1‑93 (MQ=255)
tGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAgg < 2:5949911/93‑1 (MQ=255)
tGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAgg < 2:8447321/93‑1 (MQ=255)
tGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAgg > 1:1286725/1‑93 (MQ=255)
tGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAgg < 2:9011240/93‑1 (MQ=255)
tGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGAGCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAgg < 1:8087597/93‑1 (MQ=255)
gAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑TCCCCCCCCGGGGGAATCGAgg < 2:2051550/93‑1 (MQ=255)
gAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGgt > 2:1296176/1‑93 (MQ=255)
gAACATGATGTCAACACAAAGGAAACTCATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGCAATACAGgt > 1:5972397/1‑93 (MQ=255)
aaCATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGgtg < 1:790476/93‑1 (MQ=255)
atgatgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCa > 2:1026203/1‑93 (MQ=255)
tgatgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCaa < 1:2736124/93‑1 (MQ=255)
tgatgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCaa > 1:3068356/1‑93 (MQ=255)
tgatgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCaa > 2:4663773/1‑93 (MQ=255)
gatgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCaca > 2:7398049/1‑91 (MQ=255)
atgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCaaaa < 1:6499346/93‑1 (MQ=255)
tgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCaaaaa > 1:187876/1‑93 (MQ=255)
cAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGtt < 1:342264/93‑1 (MQ=255)
cAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGtt > 1:495652/1‑93 (MQ=255)
aaCACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGttt > 1:7088086/1‑93 (MQ=255)
aaCACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGttt < 2:4043213/93‑1 (MQ=255)
acacAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTg > 1:2146120/1‑93 (MQ=255)
cacaAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGa < 1:6372243/93‑1 (MQ=255)
aaaGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGAccc < 1:8895146/93‑1 (MQ=255)
aaGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCct > 2:7297871/1‑93 (MQ=255)
aGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCctc > 2:1570715/1‑93 (MQ=255)
ggCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCctct < 1:10015471/93‑1 (MQ=255)
ggCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCctct > 1:8680765/1‑93 (MQ=255)
gCAACTAATAAAGATACAAATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTg < 1:1112297/93‑1 (MQ=255)
cAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTgg < 1:3868754/93‑1 (MQ=255)
aCTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGat > 1:817035/1‑93 (MQ=255)
cTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGata > 2:3842576/1‑93 (MQ=255)
ataaAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTa > 2:3654697/1‑93 (MQ=255)
ataaAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTa > 2:4115124/1‑93 (MQ=255)
taaAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTAc > 1:7327289/1‑93 (MQ=255)
aaGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACtt < 2:4908759/93‑1 (MQ=255)
aaGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACtt > 2:6225529/1‑93 (MQ=255)
aaGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑C‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTTCtt < 2:1520628/93‑1 (MQ=255)
aGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACttt < 1:5292914/93‑1 (MQ=255)
aGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACttt > 1:5691027/1‑93 (MQ=255)
gATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTg > 2:8966525/1‑93 (MQ=255)
aTACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGc > 2:9177124/1‑93 (MQ=255)
aTACAGATAAAGATCTAAAAACAGATCCTCCCATAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGc < 1:9192853/93‑1 (MQ=255)
tACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑A‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGcc > 2:7935007/1‑93 (MQ=255)
cAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGa > 2:1357418/1‑93 (MQ=255)
aGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGaa < 2:5066426/93‑1 (MQ=255)
aGATAAAGAGCGAAAAACAGACCCTCCCCTAAACC‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGGCCCTCTGGATATTACTTTGCCGa < 1:1359587/93‑1 (MQ=255)
gATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAAc < 2:1445527/93‑1 (MQ=255)
aTAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACt < 2:4341114/93‑1 (MQ=255)
tAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTg > 1:8528376/1‑93 (MQ=255)
tAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTg > 1:1124022/1‑93 (MQ=255)
aaGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGCCCCTCTGGATATTACTTTGCCGAACTGGa < 1:4234387/93‑1 (MQ=255)
aaGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGa < 1:9469379/93‑1 (MQ=255)
aaGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGa > 2:6593388/1‑93 (MQ=255)
aGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGAt > 2:3158116/1‑93 (MQ=255)
aGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGAt < 1:2185045/93‑1 (MQ=255)
gATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGAtt < 1:4432166/93‑1 (MQ=255)
tCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTc < 2:5477441/93‑1 (MQ=255)
tCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTc > 1:2852338/1‑93 (MQ=255)
acTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTc < 1:1077514/92‑1 (MQ=255)
tAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTg > 1:6839921/1‑93 (MQ=255)
aaaaaCAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGt > 2:9623120/1‑93 (MQ=255)
aaaCAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGtct > 1:669573/1‑93 (MQ=255)
cAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCgt > 1:6918348/1‑92 (MQ=255)
cAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGc > 2:2771725/1‑93 (MQ=255)
gATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGCACTGCATTTCTGTCTCGCtt > 1:5491568/1‑93 (MQ=255)
aTCCTCCCCTAAA‑TCCCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCtt < 1:7277798/93‑1 (MQ=255)
aTCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCttt > 1:2555107/1‑93 (MQ=255)
tCCGCCCCTAAA‑C‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGTATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTg < 2:7553526/93‑1 (MQ=255)
|
TGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTG > NC_000913/1419568‑1419747
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGT > NC_000913/1419565‑1419751
|
AGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCT < SRR4302540.9880006/94‑1 (MQ=60)
AGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCT < SRR4302540.3986877/94‑1 (MQ=60)
AGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCT < SRR4302540.9475934/94‑1 (MQ=60)
AGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCT < SRR4302540.4813961/94‑1 (MQ=60)
AGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCT > SRR4302540.629498/1‑94 (MQ=60)
GTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCC > SRR4302540.954732/1‑94 (MQ=60)
GTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCC < SRR4302540.451679/94‑1 (MQ=60)
GTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCC < SRR4302540.7384244/94‑1 (MQ=60)
GTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCC < SRR4302540.2079288/94‑1 (MQ=60)
GTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCC < SRR4302540.1854694/94‑1 (MQ=60)
TGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCC < SRR4302540.266850/94‑1 (MQ=60)
TGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCC < SRR4302540.2318943/94‑1 (MQ=60)
GTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCC < SRR4302540.7705047/94‑1 (MQ=60)
GTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCC > SRR4302540.4019426/1‑94 (MQ=60)
GTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCC > SRR4302540.6639899/1‑94 (MQ=60)
TTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCT > SRR4302540.5089242/1‑94 (MQ=60)
TTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCT < SRR4302540.6289378/94‑1 (MQ=60)
TTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCT < SRR4302540.6289379/94‑1 (MQ=60)
TTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCT > SRR4302540.7126279/1‑94 (MQ=60)
TTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCT < SRR4302540.8628679/94‑1 (MQ=60)
TTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCA > SRR4302540.9246396/1‑94 (MQ=60)
AAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA > SRR4302540.329168/1‑94 (MQ=60)
AAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA < SRR4302540.4316772/94‑1 (MQ=60)
AAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA > SRR4302540.9433789/1‑94 (MQ=60)
AACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T < SRR4302540.8397886/94‑1 (MQ=60)
AACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T < SRR4302540.3227262/94‑1 (MQ=60)
AACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T > SRR4302540.7968825/1‑94 (MQ=60)
GATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCC < SRR4302540.2028290/94‑1 (MQ=60)
GTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCC < SRR4302540.8394575/94‑1 (MQ=60)
TTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCG < SRR4302540.8206555/94‑1 (MQ=60)
TTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCG < SRR4302540.8206554/94‑1 (MQ=60)
TGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGG < SRR4302540.8842401/94‑1 (MQ=60)
TGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGG > SRR4302540.4528548/1‑94 (MQ=60)
TGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGG > SRR4302540.8630321/1‑94 (MQ=60)
AAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCCGGG < SRR4302540.3189776/94‑1 (MQ=60)
GTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGA > SRR4302540.8278339/1‑94 (MQ=60)
GTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGA < SRR4302540.5223627/94‑1 (MQ=60)
TGGTGTTTGAACGTGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAA > SRR4302540.9507438/1‑94 (MQ=60)
TGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAA > SRR4302540.9507742/1‑94 (MQ=60)
TGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAA > SRR4302540.6671388/1‑94 (MQ=60)
GGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAAT > SRR4302540.5684844/1‑94 (MQ=60)
TGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCG > SRR4302540.3567917/1‑94 (MQ=60)
TGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCG < SRR4302540.6556003/94‑1 (MQ=60)
TGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCG > SRR4302540.1113507/1‑94 (MQ=60)
GTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGCATCGA > SRR4302540.2354830/1‑94 (MQ=60)
TTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGG > SRR4302540.1299995/1‑94 (MQ=60)
TGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGG > SRR4302540.6038496/1‑94 (MQ=60)
TGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGAGCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGT < SRR4302540.8181475/94‑1 (MQ=60)
TGAACATGATGTCAACACAAAGGAAACTCATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGcaatacaggt > SRR4302540.6038498/1‑84 (MQ=60)
GAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTG > SRR4302540.1124865/1‑94 (MQ=60)
AACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGT < SRR4302540.798875/94‑1 (MQ=60)
ATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAA > SRR4302540.3102018/1‑94 (MQ=60)
TGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAA < SRR4302540.2765657/94‑1 (MQ=60)
GATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAA < SRR4302540.220341/94‑1 (MQ=60)
ATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAA < SRR4302540.2785764/94‑1 (MQ=60)
ATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAA > SRR4302540.189744/1‑94 (MQ=60)
ATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAA < SRR4302540.6913263/94‑1 (MQ=60)
ATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAA < SRR4302540.6571607/94‑1 (MQ=60)
ATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAA < SRR4302540.6571608/94‑1 (MQ=60)
TGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAG < SRR4302540.3186009/94‑1 (MQ=60)
TCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTT > SRR4302540.500965/1‑94 (MQ=60)
CAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑TCCCCCCCCGGGGGAATCGAGGTGTCAAAAAGTT > SRR4302540.3810481/1‑94 (MQ=60)
CAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTT < SRR4302540.345729/94‑1 (MQ=60)
CAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTT < SRR4302540.2530138/94‑1 (MQ=60)
CAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTT > SRR4302540.7166959/1‑94 (MQ=60)
AACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTG > SRR4302540.2169193/1‑94 (MQ=60)
AACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAAGCGAGGTGTCAAAAAGGTTG > SRR4302540.6749101/1‑94 (MQ=60)
CACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGAC > SRR4302540.4899363/1‑94 (MQ=60)
CACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGAC < SRR4302540.6443194/94‑1 (MQ=60)
CACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGAC > SRR4302540.4899362/1‑94 (MQ=60)
ACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACC > SRR4302540.740824/1‑94 (MQ=60)
ACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACC < SRR4302540.4515251/94‑1 (MQ=60)
ACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACC < SRR4302540.4079613/94‑1 (MQ=60)
ACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCCGGGGCATCGAGcagtccgcaagtttgtac > SRR4302540.5031822/1‑76 (MQ=60)
CAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCC > SRR4302540.364786/1‑94 (MQ=60)
AAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCT < SRR4302540.8998108/94‑1 (MQ=60)
AGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCT > SRR4302540.8781577/1‑94 (MQ=60)
AGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCT > SRR4302540.7802382/1‑94 (MQ=60)
GGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTG < SRR4302540.10132059/94‑1 (MQ=60)
GCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGG < SRR4302540.5131480/94‑1 (MQ=60)
GCAACTAATAAAGATACAAATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGG < SRR4302540.1123813/94‑1 (MQ=60)
CAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGA < SRR4302540.3910810/94‑1 (MQ=60)
AACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGAT > SRR4302540.825715/1‑94 (MQ=60)
AACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGAT > SRR4302540.1553831/1‑94 (MQ=60)
AACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCATCTGGCT > SRR4302540.5748675/1‑94 (MQ=60)
CTAATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATAT < SRR4302540.3506345/94‑1 (MQ=60)
ATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTAC > SRR4302540.7122453/1‑94 (MQ=60)
ATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTAC > SRR4302540.7409102/1‑94 (MQ=60)
ATAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTAC > SRR4302540.817340/1‑94 (MQ=60)
TAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑TCCCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTAC < SRR4302540.9772566/94‑1 (MQ=60)
TAAAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACT > SRR4302540.850702/1‑94 (MQ=60)
AAAGATACAGATAAAGATCTAAAAACAGACCCTCCCCTAAA‑C‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTT < SRR4302540.3066004/94‑1 (MQ=60)
AAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTT < SRR4302540.265329/94‑1 (MQ=60)
AAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTT > SRR4302540.5753680/1‑94 (MQ=60)
AAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTT < SRR4302540.6950309/94‑1 (MQ=60)
AAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTT < SRR4302540.8669201/94‑1 (MQ=60)
AAGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTT < SRR4302540.8669200/94‑1 (MQ=60)
AGATACAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTG < SRR4302540.5350787/94‑1 (MQ=60)
ATACAGATAAAGATCTAAAAACAGATCCTCCCATAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCC < SRR4302540.9303110/94‑1 (MQ=60)
CAGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTCCCGAC > SRR4302540.4166785/1‑94 (MQ=60)
AGATAAAGATCTAAAAACAGATCCTCCCCTAAA‑TCCCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAA < SRR4302540.1373610/94‑1 (MQ=60)
AGATAAAGAGCGAAAAACAGACCCTCCCCTAAACC‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGGCCCTCTGGATATTACTTTGCCGAA < SRR4302540.1373930/94‑1 (MQ=60)
ATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTG > SRR4302540.1135709/1‑94 (MQ=60)
ATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTG > SRR4302540.8627471/1‑94 (MQ=60)
ATAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTG < SRR4302540.8054788/94‑1 (MQ=60)
TAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGG < SRR4302540.1623211/94‑1 (MQ=60)
TAAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑ACCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGG > SRR4302540.2227734/1‑94 (MQ=60)
AAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAGCTGGT > SRR4302540.6839916/1‑94 (MQ=60)
AAAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGA > SRR4302540.125581/1‑94 (MQ=60)
AAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGCCCCTCTGGATATTACTTTGCCGAACTGGAT < SRR4302540.4280465/94‑1 (MQ=60)
AAGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGAT < SRR4302540.9581700/94‑1 (MQ=60)
AGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATT < SRR4302540.2208632/94‑1 (MQ=60)
AGATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGAATATTCCTTTGCCGACCTGGATT > SRR4302540.8230955/1‑94 (MQ=60)
GATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTT < SRR4302540.4480182/94‑1 (MQ=60)
GATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTT > SRR4302540.6607440/1‑94 (MQ=60)
ATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTC > SRR4302540.9600007/1‑94 (MQ=60)
ATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTC > SRR4302540.2883240/1‑94 (MQ=60)
ATCTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTATGGATATTACTTTGCCGAACTGGATTTC < SRR4302540.3994692/94‑1 (MQ=60)
ACTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCT < SRR4302540.8247109/94‑1 (MQ=60)
ACTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCT < SRR4302540.1088527/94‑1 (MQ=60)
CTAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTG > SRR4302540.6915679/1‑94 (MQ=60)
TAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGCTATTACTTTGCCGAACTGGATTTCTGT > SRR4302540.60960/1‑94 (MQ=60)
TAAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGT > SRR4302540.60958/1‑94 (MQ=60)
TAAAAACAGATCCTCCCCTAAA‑T‑CACCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCATCTGGATATTACTTTGCCGAACTGGAATTCTGT < SRR4302540.9076755/94‑1 (MQ=60)
AAAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTC > SRR4302540.2944975/1‑94 (MQ=60)
AAAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCT > SRR4302540.676752/1‑94 (MQ=60)
AAACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTC < SRR4302540.7253897/94‑1 (MQ=60)
AACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCG < SRR4302540.73747/94‑1 (MQ=60)
ACAGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGT > SRR4302540.6995329/1‑94 (MQ=60)
AGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGCACTGCATTTCTGTCTCGCTT > SRR4302540.5552028/1‑94 (MQ=60)
AGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTT > SRR4302540.121447/1‑94 (MQ=60)
AGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTT > SRR4302540.2186748/1‑94 (MQ=60)
AGATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTT > SRR4302540.5552025/1‑94 (MQ=60)
GATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTT > SRR4302540.2582636/1‑94 (MQ=60)
GATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTT < SRR4302540.1086534/94‑1 (MQ=60)
GATCCTCCCCTAAA‑C‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTT < SRR4302540.7361124/94‑1 (MQ=60)
ATCCTCCCCTAAA‑TCCCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTT < SRR4302540.7359001/94‑1 (MQ=60)
ATCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTG < SRR4302540.1091463/94‑1 (MQ=60)
TCCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGG < SRR4302540.4289618/94‑1 (MQ=60)
CCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCTAACTGGATTTCTGTCTCGCTTTGGC > SRR4302540.5876497/1‑94 (MQ=60)
CCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGC > SRR4302540.4418060/1‑94 (MQ=60)
CCTCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGC < SRR4302540.1991451/94‑1 (MQ=60)
TCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGT > SRR4302540.7341140/1‑94 (MQ=60)
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AGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAA‑T‑CCCCCCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGT > NC_000913/1419565‑1419751
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
