Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,461,082	C→T	P312S (CCA→TCA)	b1398 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,461,082	0	C	T	100.0%	913.9 / NA	249	P312S (CCA→TCA)	b1398	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (136/113); total (136/113)

Only 100 of 257 total aligned reads displayed.

GGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTACCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCG  >  NC_000913/1460992‑1461171

ggTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCa                                                                                         <  1:6183679/93‑1 (MQ=255)

ggTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCa                                                                                         >  1:2122503/1‑93 (MQ=255)

  tGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAgg                                                                                       <  2:3675815/93‑1 (MQ=255)

  tGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAgg                                                                                       >  1:4784548/1‑93 (MQ=255)

  tGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAgg                                                                                       >  1:3442930/1‑93 (MQ=255)

   gAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGa                                                                                      >  2:8333264/1‑93 (MQ=255)

    aaCATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGaa                                                                                     <  2:1227461/93‑1 (MQ=255)

     aCATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAAc                                                                                    >  2:7113833/1‑93 (MQ=255)

     aCATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAAc                                                                                    >  1:6049634/1‑93 (MQ=255)

      cATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACg                                                                                   <  1:215736/93‑1 (MQ=255)

      aaTGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACg                                                                                   <  2:8369021/92‑1 (MQ=255)

       aTGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACgg                                                                                  >  1:5533400/1‑93 (MQ=255)

       aTGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACgg                                                                                  >  2:6167005/1‑93 (MQ=255)

       aTGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACgg                                                                                  <  1:911987/93‑1 (MQ=255)

       aTGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACgg                                                                                  >  1:2089938/1‑93 (MQ=255)

       aTGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACgg                                                                                  >  2:1397003/1‑93 (MQ=255)

       aTGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACgg                                                                                  >  2:2122381/1‑93 (MQ=255)

             aaCTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGa                                                                            >  1:6945545/1‑93 (MQ=255)

                tGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTa                                                                         <  2:8479180/93‑1 (MQ=255)

                tGTTAGTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTa                                                                         <  2:5622128/93‑1 (MQ=255)

                   tATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATgc                                                                      >  2:5876548/1‑93 (MQ=255)

                   tATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATgc                                                                      >  1:7766711/1‑93 (MQ=255)

                    aTTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATgcg                                                                     >  2:2505486/1‑93 (MQ=255)

                    aTTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATgcg                                                                     >  2:6368017/1‑93 (MQ=255)

                     ttCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATgcgc                                                                    >  2:8051980/1‑93 (MQ=255)

                      tCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGcgcc                                                                   >  1:5980280/1‑93 (MQ=255)

                          cacGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCAt                                                               >  2:2131227/1‑93 (MQ=255)

                          cacGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCAt                                                               >  1:3397172/1‑93 (MQ=255)

                          cacGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCAt                                                               >  2:5117594/1‑93 (MQ=255)

                           acGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATg                                                              >  2:5355312/1‑93 (MQ=255)

                           acGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATg                                                              <  1:855005/93‑1 (MQ=255)

                              cTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGAt                                                           <  1:7346785/93‑1 (MQ=255)

                              cTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGAt                                                           <  2:8578894/93‑1 (MQ=255)

                               tGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATc                                                          <  1:1056749/93‑1 (MQ=255)

                               tGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATc                                                          >  2:9438687/1‑93 (MQ=255)

                                gACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCg                                                         >  2:4305442/1‑93 (MQ=255)

                                gACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCg                                                         <  1:7050006/93‑1 (MQ=255)

                                    aaaGAAGCATGGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATc                                                     <  2:1893907/93‑1 (MQ=255)

                                      agaagCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAg                                                   >  2:4871366/1‑93 (MQ=255)

                                       gaagCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGc                                                  <  1:9621439/93‑1 (MQ=255)

                                        aagCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCg                                                 >  1:871797/1‑93 (MQ=255)

                                         agCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCgg                                                <  2:5663150/93‑1 (MQ=255)

                                         agCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCgg                                                >  2:1663389/1‑93 (MQ=255)

                                           cATTGCCGGTCAGTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGAc                                              <  1:1635238/93‑1 (MQ=255)

                                               gCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAg                                          <  2:9666658/93‑1 (MQ=255)

                                                ccGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGc                                         <  2:9752895/93‑1 (MQ=255)

                                                ccGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGc                                         <  1:1661984/93‑1 (MQ=255)

                                                 cGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCg                                        >  2:7393886/1‑93 (MQ=255)

                                                  ggTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGa                                       >  1:9913705/1‑93 (MQ=255)

                                                  ggTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGa                                       >  2:3061652/1‑93 (MQ=255)

                                                   gTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGAt                                      <  1:9737831/93‑1 (MQ=255)

                                                   gTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGAt                                      >  1:4591490/1‑93 (MQ=255)

                                                      aTTCGTTACCGCACGCGTGATTTACCCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGAc                                   <  2:3600187/93‑1 (MQ=255)

                                                      aTTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGAc                                   <  1:8903289/93‑1 (MQ=255)

                                                       ttCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACa                                  >  2:6737890/1‑93 (MQ=255)

                                                       ttCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACa                                  >  2:4155473/1‑93 (MQ=255)

                                                          gTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGt                               >  1:9870410/1‑93 (MQ=255)

                                                           ttACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGtt                              >  2:5085885/1‑93 (MQ=255)

                                                           ttACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGtt                              >  1:7661845/1‑93 (MQ=255)

                                                           ttACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGtt                              >  1:2320620/1‑93 (MQ=255)

                                                            tACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTg                             >  2:8976276/1‑93 (MQ=255)

                                                              ccGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGat                           <  2:6821068/93‑1 (MQ=255)

                                                               cGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGatt                          >  2:9916064/1‑93 (MQ=255)

                                                                gCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGatta                         <  2:3752744/93‑1 (MQ=255)

                                                                gCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGatta                         >  2:4992633/1‑93 (MQ=255)

                                                                gCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATCCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGatta                         <  2:6002003/93‑1 (MQ=255)

                                                                 cACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGattat                        <  2:4635572/93‑1 (MQ=255)

                                                                  aCGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGattatt                       <  2:382542/93‑1 (MQ=255)

                                                                  aCGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGattatt                       >  1:3732470/1‑93 (MQ=255)

                                                                  aCGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGattatt                       <  2:7152647/93‑1 (MQ=255)

                                                                   cgcgTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTc                      <  1:5009871/93‑1 (MQ=255)

                                                                   cgcgTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTc                      >  2:648786/1‑93 (MQ=255)

                                                                   cgcgTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTc                      >  1:8406892/1‑93 (MQ=255)

                                                                   cgcgTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTc                      <  1:8221380/93‑1 (MQ=255)

                                                                    gcgTGATTTAACCCGACTGTTATCAGGACCGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTcg                     <  1:7269681/93‑1 (MQ=255)

                                                                    gcgTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTcg                     >  1:1298855/1‑93 (MQ=255)

                                                                      gTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTcgcg                   <  2:2999050/93‑1 (MQ=255)

                                                                       tGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCgg                  >  2:9291761/1‑93 (MQ=255)

                                                                       tGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCgg                  >  1:5169378/1‑93 (MQ=255)

                                                                       ggATTTAACCCGACTGTTATCAGGAACGTCGCGGACTATGACCCGCATCGATCGCATCAGAGGACTCATCGATGGCATGTTGATTATTcggcg                  >  2:1033858/2‑90 (MQ=255)

                                                                         aTTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGgtg                >  1:2744780/1‑93 (MQ=255)

                                                                          tttAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGgtgt               >  2:2260592/1‑93 (MQ=255)

                                                                           ttAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTa              <  1:5734808/93‑1 (MQ=255)

                                                                             aaCCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTaaa            <  2:9566444/93‑1 (MQ=255)

                                                                             aaCCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTaaa            <  2:2807961/93‑1 (MQ=255)

                                                                                ccGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGt         <  1:3942132/93‑1 (MQ=255)

                                                                                 cGACTGTTATCAGGCACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTc        <  1:4045227/93‑1 (MQ=255)

                                                                                 cGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTc        >  2:3396080/1‑93 (MQ=255)

                                                                                 cGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTc        <  1:2855978/93‑1 (MQ=255)

                                                                                 cGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTc        <  1:5558750/93‑1 (MQ=255)

                                                                                 cGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTc        <  2:5330983/93‑1 (MQ=255)

                                                                                  gACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCt       <  2:8279676/93‑1 (MQ=255)

                                                                                   aCTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCtt      <  1:4622656/93‑1 (MQ=255)

                                                                                   aCTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCtt      <  1:1950353/93‑1 (MQ=255)

                                                                                    cTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCttt     >  2:1760642/1‑93 (MQ=255)

                                                                                     tGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTc    >  2:8212672/1‑93 (MQ=255)

                                                                                      gTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTcc   <  1:7555340/93‑1 (MQ=255)

                                                                                       ttATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCg  >  1:3097940/1‑93 (MQ=255)

                                                                                       ttATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCg  >  1:293910/1‑93 (MQ=255)

                                                                                       ttATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCg  >  1:7618352/1‑93 (MQ=255)

GGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTACCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCG  >  NC_000913/1460992‑1461171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTACCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCGTCAC  >  NC_000913/1460989‑1461175

GATGGTGAACATTGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTAT                                                                                               >  SRR4302540.9648498/1‑94 (MQ=60)

GATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTAT                                                                                               >  SRR4302540.9987720/1‑94 (MQ=60)

GATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTAT                                                                                               <  SRR4302540.660988/94‑1 (MQ=60)

GATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTAT                                                                                               <  SRR4302540.6412353/94‑1 (MQ=60)

GATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTAT                                                                                               >  SRR4302540.5588526/1‑94 (MQ=60)

GATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTAT                                                                                               <  SRR4302540.2624413/94‑1 (MQ=60)

 ATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATC                                                                                              <  SRR4302540.8798895/94‑1 (MQ=60)

 ATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATC                                                                                              >  SRR4302540.1597673/1‑94 (MQ=60)

 ATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATC                                                                                              >  SRR4302540.34831/1‑94 (MQ=60)

 ATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATC                                                                                              >  SRR4302540.10080645/1‑94 (MQ=60)

 ATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATC                                                                                              >  SRR4302540.10031113/1‑94 (MQ=60)

 ATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATC                                                                                              >  SRR4302540.6660194/1‑94 (MQ=60)

  TGGTGAACATGGCTAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCA                                                                                             <  SRR4302540.5155864/94‑1 (MQ=60)

  TGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCA                                                                                             >  SRR4302540.2915679/1‑94 (MQ=60)

  TGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCA                                                                                             >  SRR4302540.8201243/1‑94 (MQ=60)

  TGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCA                                                                                             >  SRR4302540.2145274/1‑94 (MQ=60)

  TGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCA                                                                                             <  SRR4302540.2174483/94‑1 (MQ=60)

   GGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAG                                                                                            <  SRR4302540.6252555/94‑1 (MQ=60)

    GTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGG                                                                                           >  SRR4302540.3480367/1‑94 (MQ=60)

    GTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGG                                                                                           >  SRR4302540.1235642/1‑94 (MQ=60)

    GTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGG                                                                                           >  SRR4302540.4835696/1‑94 (MQ=60)

     TGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGA                                                                                          <  SRR4302540.3795074/94‑1 (MQ=60)

      GAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAA                                                                                         >  SRR4302540.2479702/1‑94 (MQ=60)

       AACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAAC                                                                                        >  SRR4302540.6116865/1‑94 (MQ=60)

       AACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAAC                                                                                        >  SRR4302540.2005231/1‑94 (MQ=60)

        ACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACG                                                                                       <  SRR4302540.5191570/94‑1 (MQ=60)

        ACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACG                                                                                       >  SRR4302540.704494/1‑94 (MQ=60)

         CATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGG                                                                                      >  SRR4302540.5594333/1‑94 (MQ=60)

         CATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGG                                                                                      <  SRR4302540.7779737/94‑1 (MQ=60)

         CATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGG                                                                                      <  SRR4302540.217843/94‑1 (MQ=60)

         CATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGG                                                                                      >  SRR4302540.2112388/1‑94 (MQ=60)

          ATGGCGAGCTGTTATTCACCACGCTTACCAAACAAGCATTGCCGCTCATTCGTTACCGCACGCGTCATTTAACCCGACTGTTATCAGGAACGcg                                                                                     >  SRR4302540.7194467/1‑92 (MQ=60)

          ATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGC                                                                                     >  SRR4302540.233296/1‑94 (MQ=60)

          ATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGC                                                                                     <  SRR4302540.921636/94‑1 (MQ=60)

          ATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGC                                                                                     >  SRR4302540.9614653/1‑94 (MQ=60)

               GAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGA                                                                                >  SRR4302540.9983921/1‑94 (MQ=60)

               GAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGA                                                                                >  SRR4302540.7022850/1‑94 (MQ=60)

                AACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGAC                                                                               <  SRR4302540.4790781/94‑1 (MQ=60)

                 ACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACT                                                                              >  SRR4302540.278275/1‑94 (MQ=60)

                   TGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTAT                                                                            <  SRR4302540.2965802/94‑1 (MQ=60)

                   TGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTAT                                                                            <  SRR4302540.7710155/94‑1 (MQ=60)

                    GTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATG                                                                           >  SRR4302540.5067338/1‑94 (MQ=60)

                     TTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGC                                                                          >  SRR4302540.7857510/1‑94 (MQ=60)

                        TTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCC                                                                       >  SRR4302540.4136508/1‑94 (MQ=60)

                        TTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCC                                                                       >  SRR4302540.4780053/1‑94 (MQ=60)

                        TTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCC                                                                       >  SRR4302540.6046492/1‑94 (MQ=60)

                         TCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCG                                                                      <  SRR4302540.5579661/94‑1 (MQ=60)

                          CACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGC                                                                     >  SRR4302540.7393623/1‑94 (MQ=60)

                           CCCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCA                                                                    <  SRR4302540.5910885/94‑1 (MQ=60)

                           ACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCA                                                                    >  SRR4302540.3737894/1‑94 (MQ=60)

                           ACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCA                                                                    >  SRR4302540.7365429/1‑94 (MQ=60)

                            CCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCAT                                                                   >  SRR4302540.3434221/1‑94 (MQ=60)

                            CCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCAT                                                                   <  SRR4302540.8910692/94‑1 (MQ=60)

                             CACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATG                                                                  <  SRR4302540.6074020/94‑1 (MQ=60)

                             CACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATG                                                                  >  SRR4302540.163921/1‑94 (MQ=60)

                              ACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGG                                                                 >  SRR4302540.8441753/1‑94 (MQ=60)

                              ACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGG                                                                 <  SRR4302540.864083/94‑1 (MQ=60)

                              ACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGG                                                                 >  SRR4302540.9710550/1‑94 (MQ=60)

                                 CTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATC                                                              <  SRR4302540.7428756/94‑1 (MQ=60)

                                  TGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCG                                                             >  SRR4302540.3765324/1‑94 (MQ=60)

                                  TGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCG                                                             <  SRR4302540.1067506/94‑1 (MQ=60)

                                   GACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGC                                                            <  SRR4302540.7128409/94‑1 (MQ=60)

                                    ACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCA                                                           <  SRR4302540.5747004/94‑1 (MQ=60)

                                    ACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCA                                                           <  SRR4302540.5747005/94‑1 (MQ=60)

                                      CAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATC                                                         >  SRR4302540.7613873/1‑94 (MQ=60)

                                         AGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGC                                                      >  SRR4302540.6458280/1‑94 (MQ=60)

                                          GAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCG                                                     <  SRR4302540.9734847/94‑1 (MQ=60)

                                          GAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCG                                                     <  SRR4302540.1669977/94‑1 (MQ=60)

                                          GAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCG                                                     <  SRR4302540.9734848/94‑1 (MQ=60)

                                          GAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCG                                                     >  SRR4302540.881050/1‑94 (MQ=60)

                                           AAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGG                                                    <  SRR4302540.1560765/94‑1 (MQ=60)

                                           AAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGG                                                    >  SRR4302540.3352883/1‑94 (MQ=60)

                                             GCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGAC                                                  <  SRR4302540.9173598/94‑1 (MQ=60)

                                              CATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGGGGACG                                                 >  SRR4302540.2533695/1‑94 (MQ=60)

                                              CATTGCCGGTCAGTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACG                                                 <  SRR4302540.1653127/94‑1 (MQ=60)

                                               ATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGC                                                >  SRR4302540.1757388/1‑94 (MQ=60)

                                               ATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGC                                                <  SRR4302540.9743698/94‑1 (MQ=60)

                                               ATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGC                                                >  SRR4302540.6223961/1‑94 (MQ=60)

                                               ATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGC                                                >  SRR4302540.7086269/1‑94 (MQ=60)

                                                  GCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGC                                             <  SRR4302540.8713430/94‑1 (MQ=60)

                                                   CCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCG                                            <  SRR4302540.1680082/94‑1 (MQ=60)

                                                    CGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGA                                           >  SRR4302540.10029491/1‑94 (MQ=60)

                                                     GGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGAT                                          >  SRR4302540.9994400/1‑94 (MQ=60)

                                                     GGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGAT                                          >  SRR4302540.4640907/1‑94 (MQ=60)

                                                     GGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGAT                                          <  SRR4302540.860897/94‑1 (MQ=60)

                                                     GGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGAT                                          >  SRR4302540.2245470/1‑94 (MQ=60)

                                                      GTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATG                                         >  SRR4302540.10013309/1‑94 (MQ=60)

                                                      GTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATG                                         <  SRR4302540.9852155/94‑1 (MQ=60)

                                                        CATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTCTGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGAC                                       >  SRR4302540.7663581/1‑94 (MQ=60)

                                                        CATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGAC                                       >  SRR4302540.7663578/1‑94 (MQ=60)

                                                        CATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGAC                                       >  SRR4302540.4897881/1‑94 (MQ=60)

                                                         ATTCGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACA                                      <  SRR4302540.9006367/94‑1 (MQ=60)

                                                            CGTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGT                                   >  SRR4302540.9985688/1‑94 (MQ=60)

                                                             GTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTT                                  >  SRR4302540.2345607/1‑94 (MQ=60)

                                                             GTTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTT                                  >  SRR4302540.7748137/1‑94 (MQ=60)

                                                              TTACCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTG                                 >  SRR4302540.2170470/1‑94 (MQ=60)

                                                                 CCGCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATT                              <  SRR4302540.2137464/94‑1 (MQ=60)

                                                                   GCACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTAT                            <  SRR4302540.7318589/94‑1 (MQ=60)

                                                                    CACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATT                           <  SRR4302540.8595454/94‑1 (MQ=60)

                                                                    CACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATT                           >  SRR4302540.3773193/1‑94 (MQ=60)

                                                                     ACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTC                          >  SRR4302540.21170/1‑94 (MQ=60)

                                                                     ACGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTC                          >  SRR4302540.8504471/1‑94 (MQ=60)

                                                                     ACGCGTGATGTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTC                          <  SRR4302540.3450271/94‑1 (MQ=60)

                                                                      CGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCG                         >  SRR4302540.1312321/1‑94 (MQ=60)

                                                                      CGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCG                         <  SRR4302540.5064120/94‑1 (MQ=60)

                                                                      CGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCG                         <  SRR4302540.8316940/94‑1 (MQ=60)

                                                                      CGCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCA                         >  SRR4302540.4180540/1‑94 (MQ=60)

                                                                       GCGTGATTTAACCCGACTGTTATCAGGACCGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGC                        <  SRR4302540.7350801/94‑1 (MQ=60)

                                                                       GCGTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGC                        >  SRR4302540.5289723/1‑94 (MQ=60)

                                                                         GTGATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGG                      >  SRR4302540.5225619/1‑94 (MQ=60)

                                                                           GATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTG                    >  SRR4302540.2774424/1‑94 (MQ=60)

                                                                           GATTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTG                    <  SRR4302540.381247/94‑1 (MQ=60)

                                                                             TTTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTA                  >  SRR4302540.4662610/1‑94 (MQ=60)

                                                                              TTAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAA                 <  SRR4302540.5797985/94‑1 (MQ=60)

                                                                               TAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAA                >  SRR4302540.3340154/1‑94 (MQ=60)

                                                                               TAACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAA                <  SRR4302540.6063163/94‑1 (MQ=60)

                                                                                AACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGCTTATTCGCGGTGTAAAT               >  SRR4302540.8272815/1‑94 (MQ=60)

                                                                                AACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAAT               <  SRR4302540.6926189/94‑1 (MQ=60)

                                                                                AACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAAT               <  SRR4302540.5612618/94‑1 (MQ=60)

                                                                                 ACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATG              <  SRR4302540.4978688/94‑1 (MQ=60)

                                                                                 ACCCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATG              <  SRR4302540.8991185/94‑1 (MQ=60)

                                                                                   CCGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTC            <  SRR4302540.3984715/94‑1 (MQ=60)

                                                                                    CGACTGTTATCAGGCACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCT           <  SRR4302540.4088838/94‑1 (MQ=60)

                                                                                    CGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCT           <  SRR4302540.2886918/94‑1 (MQ=60)

                                                                                    CGACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCT           <  SRR4302540.5619970/94‑1 (MQ=60)

                                                                                     GACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTT          >  SRR4302540.820934/1‑94 (MQ=60)

                                                                                     GACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTT          <  SRR4302540.2978302/94‑1 (MQ=60)

                                                                                     GACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTT          <  SRR4302540.4068532/94‑1 (MQ=60)

                                                                                      ACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATTACATGTTGATTATTAGCGGTGTAAATGTCTTT         >  SRR4302540.7763086/1‑94 (MQ=60)

                                                                                      ACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTT         <  SRR4302540.4672202/94‑1 (MQ=60)

                                                                                      ACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTT         <  SRR4302540.1971574/94‑1 (MQ=60)

                                                                                      ACTGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTT         <  SRR4302540.1952866/94‑1 (MQ=60)

                                                                                        TGTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCC       <  SRR4302540.10096872/94‑1 (MQ=60)

                                                                                         GTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCG      >  SRR4302540.3131890/1‑94 (MQ=60)

                                                                                         GTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCG      <  SRR4302540.7640058/94‑1 (MQ=60)

                                                                                         GTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCG      >  SRR4302540.296812/1‑94 (MQ=60)

                                                                                         GTTATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCG      >  SRR4302540.7704007/1‑94 (MQ=60)

                                                                                           TATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCGTC    <  SRR4302540.9482079/94‑1 (MQ=60)

                                                                                            ATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCGTCA   >  SRR4302540.3859300/1‑94 (MQ=60)

                                                                                            ATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCGTCA   >  SRR4302540.9682926/1‑94 (MQ=60)

                                                                                            ATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCGTCA   >  SRR4302540.4340536/1‑94 (MQ=60)

                                                                                            ATCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCGTCA   >  SRR4302540.5745944/1‑94 (MQ=60)

                                                                                             TCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCGTCAC  >  SRR4302540.8954609/1‑94 (MQ=60)

GATGGTGAACATGGCGAACTGTTATTCACCACGCTGACCAAAGAAGCATTGCCGGTCATTCGTTACCGCACGCGTGATTTAACCCGACTGTTACCAGGAACGGCGCGGACTATGCGCCGCATGGATCGCATCAGCGGACGCAGCGATGACATGTTGATTATTCGCGGTGTAAATGTCTTTCCGTCAC  >  NC_000913/1460989‑1461175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`