Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,479,250	T→C	R106R (CGT→CGC)	ynbD →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,479,250	0	T	C	100.0%	715.8 / NA	220	R106R (CGT→CGC)	ynbD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (94/126); total (94/126)

Only 100 of 228 total aligned reads displayed.

ACAGCGCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGTCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTAT  >  NC_000913/1479160‑1479339

aCAGCGCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGccc                                                                                         >  2:1065957/1‑93 (MQ=255)

aCAGCGCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGccc                                                                                         <  1:2357425/93‑1 (MQ=255)

aCAGCGCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGccc                                                                                         >  2:8467077/1‑93 (MQ=255)

 cAGCGCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAG‑TTAGTTTTATCCGCCCTg                                                                                       >  2:7639971/1‑93 (MQ=255)

   gcgcCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGa                                                                                      >  2:3691627/1‑93 (MQ=255)

     gcCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAag                                                                                    <  1:6951976/93‑1 (MQ=255)

        gACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAagtga                                                                                 <  1:9525322/93‑1 (MQ=255)

        gACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAagtga                                                                                 >  1:8656889/1‑93 (MQ=255)

        cccTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAagtga                                                                                 <  1:28654/91‑1 (MQ=255)

          cTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAagtgagt                                                                               <  2:1827301/93‑1 (MQ=255)

            tGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTgg                                                                             <  1:107099/93‑1 (MQ=255)

            tGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTgg                                                                             <  2:8383188/93‑1 (MQ=255)

             gTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCTGCCCTGAAGTGAGCggg                                                                            >  2:9067350/1‑93 (MQ=255)

             gTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTggg                                                                            <  2:9733260/93‑1 (MQ=255)

               ccACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGt                                                                          <  2:6287787/93‑1 (MQ=255)

                cACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTg                                                                         >  1:9194724/1‑93 (MQ=255)

                 aCCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGGGa                                                                        >  1:7205971/1‑93 (MQ=255)

                  ccGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGAc                                                                       >  2:620084/1‑93 (MQ=255)

                    ggCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACgg                                                                     <  2:4318919/93‑1 (MQ=255)

                    ggCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACgg                                                                     <  1:5615093/93‑1 (MQ=255)

                     gCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACggg                                                                    >  1:8834219/1‑93 (MQ=255)

                     gCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACggg                                                                    <  1:7504166/93‑1 (MQ=255)

                     gCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACggg                                                                    >  2:2919121/1‑93 (MQ=255)

                     gCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGCGACggg                                                                    >  2:8178151/1‑93 (MQ=255)

                      cTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGa                                                                   <  1:4153381/93‑1 (MQ=255)

                      cTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGa                                                                   <  2:9005079/93‑1 (MQ=255)

                       ttATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGAt                                                                  >  1:9529018/1‑93 (MQ=255)

                       ttATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGAt                                                                  >  2:5604358/1‑93 (MQ=255)

                        tATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATg                                                                 <  1:5378443/93‑1 (MQ=255)

                           tCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCt                                                              <  1:5446767/93‑1 (MQ=255)

                              ggCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTAtt                                                           <  2:1533680/93‑1 (MQ=255)

                                 aaCGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGAGACGGGATGGCTATTTTc                                                        >  2:4842226/1‑93 (MQ=255)

                                  aCGGTAATGGCCTGCTGCGGTTTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTc                                                        >  2:9176733/1‑93 (MQ=255)

                                    ggTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCa                                                     >  1:7813336/1‑93 (MQ=255)

                                    ggTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCa                                                     >  2:8173225/1‑93 (MQ=255)

                                     gTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCaa                                                    >  1:9631861/1‑93 (MQ=255)

                                      tAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAAc                                                   <  1:4972791/93‑1 (MQ=255)

                                         tGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTg                                                <  1:8184854/93‑1 (MQ=255)

                                          ggCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGa                                               <  2:958614/93‑1 (MQ=255)

                                          ggCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGa                                               <  2:3416842/93‑1 (MQ=255)

                                           gCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGaa                                              <  1:3400378/93‑1 (MQ=255)

                                           gCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGaa                                              <  2:2260331/93‑1 (MQ=255)

                                            ccTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAAc                                             <  1:1850319/93‑1 (MQ=255)

                                            ccTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAAc                                             <  1:6165641/93‑1 (MQ=255)

                                            ccTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGACGGCTATTTTCGCAACTTGAAc                                             <  2:7264269/93‑1 (MQ=255)

                                             ctgctgCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACt                                            >  1:4285250/1‑93 (MQ=255)

                                                ctgcGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGtt                                         <  2:9371999/93‑1 (MQ=255)

                                                ctgcGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGtt                                         <  2:7788632/93‑1 (MQ=255)

                                                 tgcGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGttt                                        >  1:3715529/1‑93 (MQ=255)

                                                 tgcGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGttt                                        >  1:9001228/1‑93 (MQ=255)

                                                 tgcGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGttt                                        >  2:8269412/1‑93 (MQ=255)

                                                 tgcGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGttt                                        >  1:7593835/1‑93 (MQ=255)

                                                  tcGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTg                                       <  1:8297899/92‑1 (MQ=255)

                                                  gcGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTg                                       >  2:6377992/1‑93 (MQ=255)

                                                    gg‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGAt                                     <  1:7052560/93‑1 (MQ=255)

                                                    gg‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGAt                                     <  1:7073149/93‑1 (MQ=255)

                                                     g‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATc                                    >  2:4728613/1‑93 (MQ=255)

                                                     g‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATc                                    <  1:3912974/93‑1 (MQ=255)

                                                     g‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATc                                    <  1:2031426/93‑1 (MQ=255)

                                                       ttttttGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCt                                   >  1:2752457/1‑93 (MQ=255)

                                                         ttttGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGc                                 >  2:7151802/1‑93 (MQ=255)

                                                         ttttGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGc                                 <  1:7262549/93‑1 (MQ=255)

                                                         ttttGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGc                                 <  2:4175918/93‑1 (MQ=255)

                                                            tGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCtt                              >  2:5244987/1‑93 (MQ=255)

                                                            tGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCtt                              >  1:3694742/1‑93 (MQ=255)

                                                             gCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGGTTGATCTGCCTta                             >  2:5822761/1‑93 (MQ=255)

                                                              ctctATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTtat                            <  2:3320193/93‑1 (MQ=255)

                                                               tctATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTtata                           >  1:3983648/1‑93 (MQ=255)

                                                                ctATCCGCTGAAGTTTAGGTTTATCAGCCCTGAAGGGAGTGGGGAGAAGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATaa                          >  1:8627380/1‑93 (MQ=255)

                                                                 tATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAAc                         >  1:7414780/1‑93 (MQ=255)

                                                                 tATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAAc                         >  1:4865806/1‑93 (MQ=255)

                                                                  aTCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAAcc                        >  2:3566278/1‑93 (MQ=255)

                                                                  aTCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAAcc                        >  2:460817/1‑93 (MQ=255)

                                                                   tCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCa                       >  1:1172517/1‑93 (MQ=255)

                                                                   tCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCa                       >  2:1150955/1‑93 (MQ=255)

                                                                   tCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCa                       <  1:3426955/93‑1 (MQ=255)

                                                                    ccGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAg                      >  2:688871/1‑93 (MQ=255)

                                                                    ccGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAg                      <  1:6686980/93‑1 (MQ=255)

                                                                    ccGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAg                      <  2:6149789/93‑1 (MQ=255)

                                                                     cGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGt                     <  2:9826872/93‑1 (MQ=255)

                                                                     cGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGt                     <  1:4618557/93‑1 (MQ=255)

                                                                      gCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGtc                    <  1:2526371/93‑1 (MQ=255)

                                                                         gAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTcc                 >  1:7891527/1‑93 (MQ=255)

                                                                           agtttagtttTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCtt               >  2:2146868/1‑93 (MQ=255)

                                                                           agtttagtttTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCtt               >  2:1973777/1‑93 (MQ=255)

                                                                           agtttagtttTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCtt               >  1:7964643/1‑93 (MQ=255)

                                                                           agtttagtttTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCtt               <  1:6165081/93‑1 (MQ=255)

                                                                            gtttagtttTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTc              <  1:9908811/93‑1 (MQ=255)

                                                                            gtttagtttTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTc              >  1:9325240/1‑93 (MQ=255)

                                                                             tttagtttTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCg             >  2:1249066/1‑93 (MQ=255)

                                                                              ttagtttTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGc            <  2:3047138/93‑1 (MQ=255)

                                                                               tagtttTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCt           <  1:1129646/93‑1 (MQ=255)

                                                                                agtttTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTg          <  1:1599225/93‑1 (MQ=255)

                                                                                   tttATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCat       <  2:6579772/93‑1 (MQ=255)

                                                                                    ttATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCata      <  2:5137749/93‑1 (MQ=255)

                                                                                      aTCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCAtatt    >  1:1995382/1‑93 (MQ=255)

                                                                                      aTCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTGTGCTCTTTCTTATAATCAGTCTCCTTCGCTGCatata    >  1:6917080/1‑92 (MQ=255)

                                                                                       tCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCAtatta   <  1:4573448/93‑1 (MQ=255)

                                                                                        ccGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCAtattat  <  2:7371845/93‑1 (MQ=255)

                                                                                        ccGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCAtattat  <  1:4082741/93‑1 (MQ=255)

ACAGCGCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGTCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTAT  >  NC_000913/1479160‑1479339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAACAGCGCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGTCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTATTC  >  NC_000913/1479158‑1479341

GAACAGCGCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCC                                                                                            >  SRR4302540.4665316/1‑94 (MQ=60)

  ACAGCGCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCT                                                                                          <  SRR4302540.2382816/94‑1 (MQ=60)

      CGCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAG                                                                                      <  SRR4302540.2708882/94‑1 (MQ=60)

       GCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGT                                                                                     <  SRR4302540.7029330/94‑1 (MQ=60)

       GCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGT                                                                                     <  SRR4302540.7029329/94‑1 (MQ=60)

       GCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGT                                                                                     <  SRR4302540.7373197/94‑1 (MQ=60)

       GCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGT                                                                                     <  SRR4302540.7909897/94‑1 (MQ=60)

         CGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGA                                                                                   >  SRR4302540.4356070/1‑94 (MQ=60)

         CGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGA                                                                                   >  SRR4302540.8757452/1‑94 (MQ=60)

          ccCTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAG                                                                                  <  SRR4302540.28959/92‑1 (MQ=60)

          GACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAG                                                                                  <  SRR4302540.471267/94‑1 (MQ=60)

          GACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAG                                                                                  <  SRR4302540.8348058/94‑1 (MQ=60)

          GACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAG                                                                                  >  SRR4302540.8371152/1‑94 (MQ=60)

          GACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAG                                                                                  <  SRR4302540.471265/94‑1 (MQ=60)

          GACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAG                                                                                  <  SRR4302540.9638105/94‑1 (MQ=60)

            CTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTG                                                                                <  SRR4302540.7172475/94‑1 (MQ=60)

              TGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGG                                                                              <  SRR4302540.108248/94‑1 (MQ=60)

               GTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGG                                                                             >  SRR4302540.2428555/1‑94 (MQ=60)

                TCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGT                                                                            <  SRR4302540.7131414/94‑1 (MQ=60)

                TCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGT                                                                            <  SRR4302540.9047860/94‑1 (MQ=60)

                 CCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTG                                                                           >  SRR4302540.4054950/1‑94 (MQ=60)

                 CCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTG                                                                           >  SRR4302540.9305012/1‑94 (MQ=60)

                  CACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGA                                                                          >  SRR4302540.419589/1‑94 (MQ=60)

                  CACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGGGA                                                                          >  SRR4302540.7286304/1‑94 (MQ=60)

                   ACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGAC                                                                         <  SRR4302540.736337/94‑1 (MQ=60)

                    CCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACG                                                                        >  SRR4302540.1869045/1‑94 (MQ=60)

                    CCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACG                                                                        <  SRR4302540.2846839/94‑1 (MQ=60)

                     CGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGG                                                                       >  SRR4302540.5499767/1‑94 (MQ=60)

                     CGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGG                                                                       <  SRR4302540.4008435/94‑1 (MQ=60)

                      GGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGG                                                                      >  SRR4302540.8936396/1‑94 (MQ=60)

                      GGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGG                                                                      <  SRR4302540.5676867/94‑1 (MQ=60)

                       GCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGA                                                                     <  SRR4302540.7588033/94‑1 (MQ=60)

                        CTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGAT                                                                    <  SRR4302540.4198369/94‑1 (MQ=60)

                        CTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGAT                                                                    <  SRR4302540.2519868/94‑1 (MQ=60)

                        CTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGAT                                                                    >  SRR4302540.9641839/1‑94 (MQ=60)

                         TTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATG                                                                   >  SRR4302540.800680/1‑94 (MQ=60)

                         TTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGCTTAGTTTTATCCGCCCTGAAGTGAGTGGGGCGACGGGATG                                                                   >  SRR4302540.9485700/1‑94 (MQ=60)

                          TATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGG                                                                  <  SRR4302540.5437591/94‑1 (MQ=60)

                          TATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGG                                                                  <  SRR4302540.1943574/94‑1 (MQ=60)

                           ATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGC                                                                 <  SRR4302540.7965346/94‑1 (MQ=60)

                            TTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCT                                                                <  SRR4302540.8060031/94‑1 (MQ=60)

                             TCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTA                                                               <  SRR4302540.5506705/94‑1 (MQ=60)

                             TCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTA                                                               <  SRR4302540.1818651/94‑1 (MQ=60)

                              CTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTAT                                                              <  SRR4302540.7131814/94‑1 (MQ=60)

                               TGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATT                                                             <  SRR4302540.5474516/94‑1 (MQ=60)

                               TGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATT                                                             <  SRR4302540.9790242/94‑1 (MQ=60)

                                GGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTT                                                            <  SRR4302540.5549069/94‑1 (MQ=60)

                                  CAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTC                                                          <  SRR4302540.3740845/94‑1 (MQ=60)

                                   AACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGGGACGGGATGGCTATTTTCG                                                         >  SRR4302540.6783932/1‑94 (MQ=60)

                                     CGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCA                                                       >  SRR4302540.7904640/1‑94 (MQ=60)

                                      GGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAA                                                      >  SRR4302540.9745355/1‑94 (MQ=60)

                                      GGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAA                                                      <  SRR4302540.3077341/94‑1 (MQ=60)

                                       GTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAAC                                                     >  SRR4302540.8884060/1‑94 (MQ=60)

                                       GTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAAC                                                     <  SRR4302540.967250/94‑1 (MQ=60)

                                        TAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACT                                                    <  SRR4302540.2184971/94‑1 (MQ=60)

                                        TAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACT                                                    <  SRR4302540.5026603/94‑1 (MQ=60)

                                         AATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGAGACGGGATGGCTATTTTCGCAACTT                                                   >  SRR4302540.8735480/1‑94 (MQ=60)

                                          ATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTG                                                  <  SRR4302540.4165100/94‑1 (MQ=60)

                                          AGGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTTAAGTTTAGTTTTAGCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTG                                                  <  SRR4302540.8550073/94‑1 (MQ=60)

                                           TGGCCTGCTGCGGTTTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTG                                                  <  SRR4302540.9062881/94‑1 (MQ=60)

                                           TGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGA                                                 <  SRR4302540.8279936/94‑1 (MQ=60)

                                            GGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAA                                                >  SRR4302540.9131358/1‑94 (MQ=60)

                                             GCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAAC                                               <  SRR4302540.3437451/94‑1 (MQ=60)

                                              CCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACT                                              <  SRR4302540.7888887/94‑1 (MQ=60)

                                              CCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACT                                              <  SRR4302540.4280538/94‑1 (MQ=60)

                                              CCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACT                                              <  SRR4302540.6234341/94‑1 (MQ=60)

                                              CCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACT                                              <  SRR4302540.1870610/94‑1 (MQ=60)

                                              CCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACT                                              <  SRR4302540.6234340/94‑1 (MQ=60)

                                              CCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACT                                              >  SRR4302540.4331862/1‑94 (MQ=60)

                                              CCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACT                                              >  SRR4302540.499144/1‑94 (MQ=60)

                                               CTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTG                                             >  SRR4302540.20232/1‑94 (MQ=60)

                                               CTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTG                                             >  SRR4302540.7008522/1‑94 (MQ=60)

                                               CTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGCTTAGTTTTATCCGCCCTGCAGTGAGTGGGGTGACGGGATGGCTATTTTCGCGACTTGAACTG                                             >  SRR4302540.6132127/1‑94 (MQ=60)

                                                TGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGT                                            <  SRR4302540.7523307/94‑1 (MQ=60)

                                                  CTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTT                                          >  SRR4302540.7679150/1‑94 (MQ=60)

                                                  CTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTT                                          >  SRR4302540.9109220/1‑94 (MQ=60)

                                                  CTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTT                                          >  SRR4302540.3756068/1‑94 (MQ=60)

                                                  CTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTT                                          >  SRR4302540.3756069/1‑94 (MQ=60)

                                                    TCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGA                                        <  SRR4302540.8394249/94‑1 (MQ=60)

                                                     CGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGAT                                       <  SRR4302540.310270/94‑1 (MQ=60)

                                                      GG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATC                                      <  SRR4302540.7130993/94‑1 (MQ=60)

                                                      GG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATC                                      <  SRR4302540.7151843/94‑1 (MQ=60)

                                                      GG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATC                                      <  SRR4302540.6649517/94‑1 (MQ=60)

                                                       G‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCT                                     <  SRR4302540.2053349/94‑1 (MQ=60)

                                                       G‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCT                                     <  SRR4302540.3955364/94‑1 (MQ=60)

                                                       G‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCT                                     >  SRR4302540.5049389/1‑94 (MQ=60)

                                                       G‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCT                                     >  SRR4302540.2782206/1‑94 (MQ=60)

                                                         TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTG                                    <  SRR4302540.6711043/94‑1 (MQ=60)

                                                           TTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCC                                  <  SRR4302540.7343580/94‑1 (MQ=60)

                                                             TTGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTT                                >  SRR4302540.3735087/1‑94 (MQ=60)

                                                             TTGCTCTATCCGCTGAAGTTTAGTGTTATGCGCCCTGAAGTGAGTGGGGTGACGGGAGGGCTATTTTCGCAACTTGAACTGTTTGATacgccgt                                >  SRR4302540.3735086/1‑87 (MQ=60)

                                                              TGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTA                               >  SRR4302540.9412152/1‑94 (MQ=60)

                                                              TGCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTA                               >  SRR4302540.1169419/1‑94 (MQ=60)

                                                               GCTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTAT                              <  SRR4302540.1138319/94‑1 (MQ=60)

                                                                CTCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATA                             >  SRR4302540.4026546/1‑94 (MQ=60)

                                                                 TCTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAA                            <  SRR4302540.7303656/94‑1 (MQ=60)

                                                                 TCTATCCGCTGAAGTTTAGGTTTATCAGCCCTGAAGGGAGTGGGGAGAAGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAA                            >  SRR4302540.8727594/1‑94 (MQ=60)

                                                                  CTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAAC                           >  SRR4302540.7497366/1‑94 (MQ=60)

                                                                  CTATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAAC                           >  SRR4302540.4917990/1‑94 (MQ=60)

                                                                    ATCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCA                         >  SRR4302540.1184650/1‑94 (MQ=60)

                                                                     TCCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAG                        <  SRR4302540.3464200/94‑1 (MQ=60)

                                                                      CCGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGT                       <  SRR4302540.6760815/94‑1 (MQ=60)

                                                                       CGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTC                      <  SRR4302540.4668078/94‑1 (MQ=60)

                                                                       CGCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTC                      <  SRR4302540.3574185/94‑1 (MQ=60)

                                                                        GCTGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCT                     <  SRR4302540.2553638/94‑1 (MQ=60)

                                                                          TGAAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCC                   >  SRR4302540.7983626/1‑94 (MQ=60)

                                                                            AAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTT                 <  SRR4302540.9640388/94‑1 (MQ=60)

                                                                            AAGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTT                 >  SRR4302540.8057465/1‑94 (MQ=60)

                                                                             AGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGCTCTGCATTATCACCAGTCTCCTTC                >  SRR4302540.9436470/1‑94 (MQ=60)

                                                                             AGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTC                <  SRR4302540.1561755/94‑1 (MQ=60)

                                                                             AGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTC                <  SRR4302540.6233776/94‑1 (MQ=60)

                                                                             AGTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTC                >  SRR4302540.9436468/1‑94 (MQ=60)

                                                                              GTTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCG               <  SRR4302540.10024550/94‑1 (MQ=60)

                                                                               TTTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGC              <  SRR4302540.9483782/94‑1 (MQ=60)

                                                                                TTAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCT             <  SRR4302540.7602139/94‑1 (MQ=60)

                                                                                 TAGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTG            <  SRR4302540.1141399/94‑1 (MQ=60)

                                                                                  AGTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGC           <  SRR4302540.1616717/94‑1 (MQ=60)

                                                                                   GTTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCA          >  SRR4302540.3813294/1‑94 (MQ=60)

                                                                                    TTTTATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCAT         <  SRR4302540.3459575/94‑1 (MQ=60)

                                                                                       TATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATT      >  SRR4302540.2017004/1‑94 (MQ=60)

                                                                                       TATCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTGTGCTCTTTCTTATAATCAGTCTCCTTCGCTGCATATA      >  SRR4302540.6994048/1‑94 (MQ=60)

                                                                                         TCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTAT    <  SRR4302540.4622795/94‑1 (MQ=60)

                                                                                         TCCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTAT    <  SRR4302540.4622796/94‑1 (MQ=60)

                                                                                          CCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTATT   >  SRR4302540.4309720/1‑94 (MQ=60)

                                                                                          CCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTATT   <  SRR4302540.4126760/94‑1 (MQ=60)

                                                                                          CCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTATT   >  SRR4302540.10015975/1‑94 (MQ=60)

                                                                                          CCGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTATT   >  SRR4302540.6702409/1‑94 (MQ=60)

                                                                                           CGGCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTATTC  <  SRR4302540.6523489/94‑1 (MQ=60)

                                                                                           CGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTATTC  <  SRR4302540.3773707/94‑1 (MQ=60)

                                                                                           CGCCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTATTC  <  SRR4302540.225726/94‑1 (MQ=60)

GAACAGCGCCGACTTGTCCACCGGCTTATTCTGGCAACGGTAATGGCCTGCTGCGG‑TTTTTTGCTCTATCCGCTGAAGTTTAGTTTTATCCGTCCTGAAGTGAGTGGGGTGACGGGATGGCTATTTTCGCAACTTGAACTGTTTGATCTGCCTTATAACCAGTCTCCTTCGCTGCATATTATTC  >  NC_000913/1479158‑1479341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`