Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,490,230 T→C intergenic (‑77/‑264) b1420 ← / → trg hypothetical protein/methyl‑accepting chemotaxis protein III

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,490,2300TC100.0% 850.4 / NA 262intergenic (‑77/‑264)b1420/trghypothetical protein/methyl‑accepting chemotaxis protein III
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (158/104);  total (158/104)

Only 100 of 268 total aligned reads displayed.

ATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTC  >  NC_000913/1490140‑1490318
                                                                                          |                                                                                        
aTTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGcct                                                                                        <  2:8937291/93‑1 (MQ=255)
   gCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAg                                                                                     <  1:8597199/93‑1 (MQ=255)
    cTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAgg                                                                                    <  2:6567793/93‑1 (MQ=255)
    cTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAgg                                                                                    >  2:5295515/1‑93 (MQ=255)
      aGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCa                                                                                  <  2:7541342/93‑1 (MQ=255)
      aGGGTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCa                                                                                  <  1:2480745/93‑1 (MQ=255)
       ggTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCAc                                                                                 >  1:4678968/1‑93 (MQ=255)
        gTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCAcc                                                                                >  1:9856488/1‑93 (MQ=255)
         ttCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGACAGCCTCAGGCAccc                                                                               >  2:2696205/1‑93 (MQ=255)
         ttCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCAccc                                                                               >  2:7328495/1‑93 (MQ=255)
          tCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCg                                                                              >  2:1964633/1‑93 (MQ=255)
          tCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCg                                                                              >  2:224554/1‑93 (MQ=255)
          tCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCg                                                                              >  1:3411485/1‑93 (MQ=255)
           cATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGc                                                                             <  2:6363640/93‑1 (MQ=255)
            aTTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCa                                                                            <  2:920928/93‑1 (MQ=255)
             ttCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAg                                                                           >  1:1147695/1‑93 (MQ=255)
             ttCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAg                                                                           >  2:6412628/1‑93 (MQ=255)
               cGTTGTCCTCGGTGGATAGAAATATCGGTCGGCGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGc                                                                         <  1:9976267/93‑1 (MQ=255)
               cGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCCGGc                                                                         >  2:5807321/1‑93 (MQ=255)
               cGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGc                                                                         >  2:4023287/1‑93 (MQ=255)
                gTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCa                                                                        <  1:3144766/93‑1 (MQ=255)
                gTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCa                                                                        >  2:2099360/1‑93 (MQ=255)
                gTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCa                                                                        <  1:5921764/93‑1 (MQ=255)
                 ttGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCAt                                                                       >  2:2837488/1‑93 (MQ=255)
                   ggCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATcc                                                                     >  1:4050878/1‑93 (MQ=255)
                     ccTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTa                                                                   >  2:9700318/1‑93 (MQ=255)
                      cTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTAt                                                                  <  1:4194937/93‑1 (MQ=255)
                       tCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATg                                                                 >  2:7709710/1‑93 (MQ=255)
                       tCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATg                                                                 <  2:7410283/93‑1 (MQ=255)
                        cGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGa                                                                <  2:3946496/93‑1 (MQ=255)
                         ggTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAg                                                               >  1:3366423/1‑93 (MQ=255)
                         ggTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAg                                                               <  1:7963549/93‑1 (MQ=255)
                          gTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAgg                                                              >  1:9624544/1‑93 (MQ=255)
                          gTTGATAGAAATATCGGACGGTGCCTTCGTCTTTCTGATTCCCTGATAGACTGAAAACAAAAAGCCTCAGGCACCCGCAGGCATCCTATGAgg                                                              >  1:990132/1‑93 (MQ=255)
                             gATAGAAATATCGGTCGGGTCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGttt                                                           <  2:352337/93‑1 (MQ=255)
                              aTAGAAATATCGGTTGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTc                                                          >  2:3469239/1‑93 (MQ=255)
                                aGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCt                                                        >  1:1896877/1‑93 (MQ=255)
                                 gAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCtt                                                       >  1:1342644/1‑93 (MQ=255)
                                 gAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCtt                                                       <  1:4868904/93‑1 (MQ=255)
                                 caaaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCtt                                                       >  1:774809/2‑93 (MQ=255)
                                  aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCttg                                                      >  1:1709281/1‑92 (MQ=255)
                                  aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTa                                                      >  2:7930281/1‑93 (MQ=255)
                                  aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTa                                                      <  2:4362383/93‑1 (MQ=255)
                                    atatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAgg                                                    <  2:7766435/93‑1 (MQ=255)
                                     tatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAggg                                                   >  1:2144675/1‑93 (MQ=255)
                                      atCGGTGGGGGCCTTCGTCTTTCTGATCCCGGGTTAGCCTGAAAACAGAAAGCCTCAGGCCCCCGCGGGCATCCTAGGAGGTTTCCTTGGGGa                                                  <  2:4238241/93‑1 (MQ=255)
                                      atCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGa                                                  <  2:559949/93‑1 (MQ=255)
                                        cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACg                                                >  1:8633110/1‑93 (MQ=255)
                                        cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACg                                                <  1:2682924/93‑1 (MQ=255)
                                          gtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGaa                                              >  2:3684469/1‑93 (MQ=255)
                                            cggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGaaaa                                            <  1:9759878/93‑1 (MQ=255)
                                              gggCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAaata                                          >  2:8348289/1‑93 (MQ=255)
                                              gggCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAaata                                          >  1:6912719/1‑93 (MQ=255)
                                              gggCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAaata                                          >  1:67579/1‑93 (MQ=255)
                                              gggCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCAATGAGGTTAACTTAGGGACGAAaata                                          <  2:8988458/93‑1 (MQ=255)
                                               ggCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAaataa                                         <  2:1558534/93‑1 (MQ=255)
                                               ggCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAaataa                                         <  2:67460/93‑1 (MQ=255)
                                                gCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAaataat                                        <  2:2915633/93‑1 (MQ=255)
                                                 ccTTCGTCTTTCTGATTCCCGGGTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCCCGCATCCTATGAGGTGTCCTTAGGGACGAAAATAATc                                       >  1:5887447/1‑93 (MQ=255)
                                                   ttCGTCTTTCTTGTTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCAc                                     <  1:7316625/93‑1 (MQ=255)
                                                   ttCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCAc                                     >  1:9210998/1‑93 (MQ=255)
                                                   ttCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCAc                                     >  1:559197/1‑93 (MQ=255)
                                                    tCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACt                                    <  2:3763170/93‑1 (MQ=255)
                                                    tCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACt                                    >  1:7476587/1‑93 (MQ=255)
                                                    tCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACt                                    >  2:4647977/1‑93 (MQ=255)
                                                    tCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACt                                    <  2:9297014/93‑1 (MQ=255)
                                                     cGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACtt                                   >  1:7161746/1‑93 (MQ=255)
                                                      gTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTc                                  >  1:9967817/1‑93 (MQ=255)
                                                      gTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTc                                  >  2:7096368/1‑93 (MQ=255)
                                                      gTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTc                                  >  1:9250033/1‑93 (MQ=255)
                                                      gTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTc                                  <  1:8179254/93‑1 (MQ=255)
                                                      gTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTc                                  >  2:9553610/1‑93 (MQ=255)
                                                       tCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCa                                 <  2:6837793/93‑1 (MQ=255)
                                                       tCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCa                                 >  2:2326692/1‑93 (MQ=255)
                                                        cTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCAc                                >  2:4555323/1‑93 (MQ=255)
                                                        cTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCAc                                <  1:1260853/93‑1 (MQ=255)
                                                          ttCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGa                              <  1:9161535/93‑1 (MQ=255)
                                                           tCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGaa                             >  1:3850313/1‑93 (MQ=255)
                                                             tGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAt                           >  1:6173463/1‑93 (MQ=255)
                                                             tGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAt                           >  1:8370583/1‑93 (MQ=255)
                                                             tGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAt                           <  2:5875929/93‑1 (MQ=255)
                                                              gATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAtt                          >  1:1924326/1‑93 (MQ=255)
                                                              gATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAtt                          >  2:5121013/1‑93 (MQ=255)
                                                               aTTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTg                         >  1:5729150/1‑93 (MQ=255)
                                                               aTTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTg                         >  1:508736/1‑93 (MQ=255)
                                                                ttCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGc                        >  2:87201/1‑93 (MQ=255)
                                                                ttCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGc                        >  2:3171306/1‑93 (MQ=255)
                                                                   ccGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTg                     <  1:1036782/93‑1 (MQ=255)
                                                                       ttAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGt                 <  2:6295097/93‑1 (MQ=255)
                                                                       ttAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGt                 >  2:1084446/1‑93 (MQ=255)
                                                                          gCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGtttt              <  2:5123048/93‑1 (MQ=255)
                                                                             tGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCa           >  1:5004782/1‑93 (MQ=255)
                                                                                  aCAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAtt      >  1:5602487/1‑93 (MQ=255)
                                                                                  aCAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAtt      <  2:9641000/93‑1 (MQ=255)
                                                                                  aCAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAtt      <  1:6508503/93‑1 (MQ=255)
                                                                                    aGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAtttt    <  2:8582836/93‑1 (MQ=255)
                                                                                     gAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGACttttt   >  1:8883463/1‑93 (MQ=255)
                                                                                     gAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAttttt   <  1:1550384/93‑1 (MQ=255)
                                                                                     gAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAttttt   >  2:4884016/1‑93 (MQ=255)
                                                                                      aaaGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTc  <  2:3193974/93‑1 (MQ=255)
                                                                                          |                                                                                        
ATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTC  >  NC_000913/1490140‑1490318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTCGTCA  >  NC_000913/1490137‑1490322
                                                                                             |                                                                                            
TGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGC                                                                                              >  SRR4302540.56075/1‑94 (MQ=60)
 GAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCC                                                                                             >  SRR4302540.3610313/1‑94 (MQ=60)
   ATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTC                                                                                           >  SRR4302540.9998892/1‑94 (MQ=60)
   ATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTC                                                                                           <  SRR4302540.9569852/94‑1 (MQ=60)
     TGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAG                                                                                         >  SRR4302540.9354204/1‑94 (MQ=60)
     TGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAG                                                                                         >  SRR4302540.7819648/1‑94 (MQ=60)
      GCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGG                                                                                        <  SRR4302540.8697128/94‑1 (MQ=60)
      GCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGG                                                                                        >  SRR4302540.118491/1‑94 (MQ=60)
      GCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGG                                                                                        <  SRR4302540.3978176/94‑1 (MQ=60)
      GCTAGGTTCACTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGG                                                                                        <  SRR4302540.8697129/94‑1 (MQ=60)
         AGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCAC                                                                                     >  SRR4302540.4729026/1‑94 (MQ=60)
         AGGGTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCAC                                                                                     <  SRR4302540.2507472/94‑1 (MQ=60)
          GGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACC                                                                                    >  SRR4302540.9971675/1‑94 (MQ=60)
            TTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCG                                                                                  >  SRR4302540.3448640/1‑94 (MQ=60)
               ATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAG                                                                               >  SRR4302540.1159666/1‑94 (MQ=60)
                TTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGG                                                                              <  SRR4302540.2464647/94‑1 (MQ=60)
                 TCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTCGCCTGACAACAGAAAGCCTCAGGCACCCGCAGGC                                                                             >  SRR4302540.5697113/1‑94 (MQ=60)
                 TCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGC                                                                             >  SRR4302540.5697114/1‑94 (MQ=60)
                  CGTTGTCCTCGGTGGATAGAAATATCGGTCGGCGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCA                                                                            <  SRR4302540.10092607/94‑1 (MQ=60)
                   GTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCAT                                                                           >  SRR4302540.5968616/1‑94 (MQ=60)
                   GTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCAT                                                                           <  SRR4302540.5987189/94‑1 (MQ=60)
                   GTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCAT                                                                           >  SRR4302540.3332782/1‑94 (MQ=60)
                   GTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCAT                                                                           <  SRR4302540.3179036/94‑1 (MQ=60)
                     TGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCC                                                                         >  SRR4302540.4094552/1‑94 (MQ=60)
                     TGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCC                                                                         <  SRR4302540.8002683/94‑1 (MQ=60)
                     TGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCC                                                                         >  SRR4302540.100041/1‑94 (MQ=60)
                      GGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCT                                                                        >  SRR4302540.4880266/1‑94 (MQ=60)
                         CTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATG                                                                     >  SRR4302540.83474/1‑94 (MQ=60)
                         CTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATG                                                                     >  SRR4302540.7274695/1‑94 (MQ=60)
                         CTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATG                                                                     <  SRR4302540.4240570/94‑1 (MQ=60)
                           CGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAG                                                                   >  SRR4302540.9358164/1‑94 (MQ=60)
                           CGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAG                                                                   <  SRR4302540.2471698/94‑1 (MQ=60)
                           CGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAG                                                                   >  SRR4302540.6420165/1‑94 (MQ=60)
                           CGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAG                                                                   >  SRR4302540.3403247/1‑94 (MQ=60)
                            GGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGG                                                                  >  SRR4302540.2084991/1‑94 (MQ=60)
                            GGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGG                                                                  >  SRR4302540.9737978/1‑94 (MQ=60)
                            GGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGG                                                                  <  SRR4302540.8056360/94‑1 (MQ=60)
                            GGTTGATAGAAATATCGGACGGTGCCTTCGTCTTTCTGATTCCCTGATAGACTGAAAACAAAAAGCCTCAGGCACCCGCAGGCATCCTATGAGG                                                                  >  SRR4302540.1000238/1‑94 (MQ=60)
                              TTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTT                                                                >  SRR4302540.7182880/1‑94 (MQ=60)
                               TGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTT                                                               >  SRR4302540.8905390/1‑94 (MQ=60)
                               TGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTT                                                               <  SRR4302540.7601143/94‑1 (MQ=60)
                                  TAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCT                                                            >  SRR4302540.1917630/1‑94 (MQ=60)
                                   AGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTT                                                           >  SRR4302540.1356715/1‑94 (MQ=60)
                                   ACAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTT                                                           >  SRR4302540.783044/1‑94 (MQ=60)
                                    GAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTG                                                          >  SRR4302540.1727748/1‑94 (MQ=60)
                                    GAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTA                                                          <  SRR4302540.4921129/94‑1 (MQ=60)
                                     AAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAG                                                         <  SRR4302540.8366363/94‑1 (MQ=60)
                                      AATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGG                                                        <  SRR4302540.5384312/94‑1 (MQ=60)
                                       ATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGG                                                       >  SRR4302540.5956037/1‑94 (MQ=60)
                                       ATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGG                                                       >  SRR4302540.2167728/1‑94 (MQ=60)
                                        TATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGA                                                      >  SRR4302540.7520986/1‑94 (MQ=60)
                                         ATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAC                                                     >  SRR4302540.512570/1‑94 (MQ=60)
                                          TCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACG                                                    <  SRR4302540.5663431/94‑1 (MQ=60)
                                          TCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACG                                                    >  SRR4302540.8733390/1‑94 (MQ=60)
                                           CGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGA                                                   <  SRR4302540.2711934/94‑1 (MQ=60)
                                           CGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGA                                                   <  SRR4302540.5886395/94‑1 (MQ=60)
                                             GTCGGGGCCTTCGTCTTTCTGATTCCGGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAA                                                 <  SRR4302540.6867566/94‑1 (MQ=60)
                                              TCGGGGCCTTCGTCTTTCTGATGCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAA                                                >  SRR4302540.1868248/1‑94 (MQ=60)
                                               CGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAAT                                               <  SRR4302540.1935259/94‑1 (MQ=60)
                                               CGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAAT                                               <  SRR4302540.9874363/94‑1 (MQ=60)
                                               CGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAAT                                               >  SRR4302540.9890412/1‑94 (MQ=60)
                                               CGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAAT                                               >  SRR4302540.9890413/1‑94 (MQ=60)
                                                GGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATA                                              >  SRR4302540.9223647/1‑94 (MQ=60)
                                                GGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATA                                              >  SRR4302540.68262/1‑94 (MQ=60)
                                                GGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATA                                              >  SRR4302540.6989643/1‑94 (MQ=60)
                                                GGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATA                                              >  SRR4302540.4908362/1‑94 (MQ=60)
                                                 GGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAA                                             >  SRR4302540.3429805/1‑94 (MQ=60)
                                                  GGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAAT                                            >  SRR4302540.1423247/1‑94 (MQ=60)
                                                  GGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAAT                                            >  SRR4302540.1797687/1‑94 (MQ=60)
                                                  GGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAAT                                            >  SRR4302540.8550687/1‑94 (MQ=60)
                                                  GGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAAT                                            <  SRR4302540.8105858/94‑1 (MQ=60)
                                                   GCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATACTC                                           >  SRR4302540.4637032/1‑94 (MQ=60)
                                                   GCCTTCGTCTTTCTGATTCCCGGGTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCCCGCATCCTATGAGGTGTCCTTAGGGACGAAAATAATC                                           >  SRR4302540.5952492/1‑94 (MQ=60)
                                                     CTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCAC                                         >  SRR4302540.9321518/1‑94 (MQ=60)
                                                     CTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCAC                                         >  SRR4302540.4146062/1‑94 (MQ=60)
                                                     CTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCAC                                         >  SRR4302540.565280/1‑94 (MQ=60)
                                                      TTCGTCTTTCTTGTTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACT                                        <  SRR4302540.7398335/94‑1 (MQ=60)
                                                      TTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCGGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACT                                        <  SRR4302540.7398334/94‑1 (MQ=60)
                                                      TTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACT                                        >  SRR4302540.791906/1‑94 (MQ=60)
                                                      TTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACT                                        >  SRR4302540.7560027/1‑94 (MQ=60)
                                                       TCGTCTTTCTGATTCCCGGTTAGCCTGAAAAGAGGAAGCCTCCGGCACCCGCCGGCCTCCTACGAGGTTTCCTTAGGGCCGAAAtagatcactg                                       >  SRR4302540.7241583/1‑84 (MQ=46)
                                                       TCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTT                                       >  SRR4302540.5117555/1‑94 (MQ=60)
                                                       TCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTT                                       >  SRR4302540.7241582/1‑94 (MQ=60)
                                                        CGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTC                                      >  SRR4302540.1616412/1‑94 (MQ=60)
                                                        CGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTC                                      >  SRR4302540.10084105/1‑94 (MQ=60)
                                                        CGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTC                                      >  SRR4302540.9360767/1‑94 (MQ=60)
                                                        CGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTC                                      >  SRR4302540.10084103/1‑94 (MQ=60)
                                                        CGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTC                                      >  SRR4302540.3592892/1‑94 (MQ=60)
                                                         GTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCA                                     <  SRR4302540.853460/94‑1 (MQ=60)
                                                         GTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCA                                     <  SRR4302540.8274259/94‑1 (MQ=60)
                                                         GTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCA                                     >  SRR4302540.3848097/1‑94 (MQ=60)
                                                         GTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCA                                     >  SRR4302540.680098/1‑94 (MQ=60)
                                                          TCTTGCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCAC                                    <  SRR4302540.9770240/94‑1 (MQ=60)
                                                           CTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACG                                   <  SRR4302540.1273786/94‑1 (MQ=60)
                                                           CTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACAAAAATAATCACTTCACG                                   >  SRR4302540.2908927/1‑94 (MQ=60)
                                                             TTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAA                                 >  SRR4302540.3892182/1‑94 (MQ=60)
                                                             TTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAA                                 <  SRR4302540.9271486/94‑1 (MQ=60)
                                                               CTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCCGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAT                               >  SRR4302540.4991189/1‑94 (MQ=60)
                                                               CTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAT                               >  SRR4302540.6242249/1‑94 (MQ=60)
                                                               CTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAT                               >  SRR4302540.8467727/1‑94 (MQ=60)
                                                                TGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATT                              >  SRR4302540.3377935/1‑94 (MQ=60)
                                                                TGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATT                              >  SRR4302540.1945304/1‑94 (MQ=60)
                                                                TGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATT                              <  SRR4302540.1701232/94‑1 (MQ=60)
                                                                TGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATT                              >  SRR4302540.927833/1‑94 (MQ=60)
                                                                TGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATT                              <  SRR4302540.4327065/94‑1 (MQ=60)
                                                                TGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGATTCCTTAGAGACGAAAATAATCACTTCACGAAACT                              >  SRR4302540.121528/1‑94 (MQ=60)
                                                                 GATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTG                             >  SRR4302540.5792239/1‑94 (MQ=60)
                                                                 GATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTG                             >  SRR4302540.514190/1‑94 (MQ=60)
                                                                     CCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTG                         >  SRR4302540.2710519/1‑94 (MQ=60)
                                                                      CCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGC                        <  SRR4302540.1047324/94‑1 (MQ=60)
                                                                       CGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCT                       <  SRR4302540.10091631/94‑1 (MQ=60)
                                                                        GGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACAAAAATAATCACTTCACGAAATTGCGTGCTG                      >  SRR4302540.1060227/1‑94 (MQ=60)
                                                                         GTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGT                     >  SRR4302540.40341/1‑94 (MQ=60)
                                                                           TAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTT                   <  SRR4302540.5915424/94‑1 (MQ=60)
                                                                           TAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTT                   >  SRR4302540.7089150/1‑94 (MQ=60)
                                                                             GCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTC                 <  SRR4302540.6192895/94‑1 (MQ=60)
                                                                               CTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCA               <  SRR4302540.9413010/94‑1 (MQ=60)
                                                                               CTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCA               >  SRR4302540.5058987/1‑94 (MQ=60)
                                                                                 GAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGA             >  SRR4302540.6690605/1‑94 (MQ=60)
                                                                                   AAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAT           >  SRR4302540.5323410/1‑94 (MQ=60)
                                                                                    AACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTTCGTGCTGTTTTCCAGAATT          >  SRR4302540.8770528/1‑94 (MQ=60)
                                                                                    AACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATT          >  SRR4302540.5664137/1‑94 (MQ=60)
                                                                                     ACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTT         <  SRR4302540.6580826/94‑1 (MQ=60)
                                                                                       AGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGACTTTTT       >  SRR4302540.8986282/1‑94 (MQ=60)
                                                                                       AGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTT       >  SRR4302540.8986283/1‑94 (MQ=60)
                                                                                       AGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTT       <  SRR4302540.2073350/94‑1 (MQ=60)
                                                                                        GAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTC      <  SRR4302540.1334438/94‑1 (MQ=60)
                                                                                        GAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTC      <  SRR4302540.1334437/94‑1 (MQ=60)
                                                                                        GAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTC      <  SRR4302540.1567471/94‑1 (MQ=60)
                                                                                        GAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTC      <  SRR4302540.10064463/94‑1 (MQ=60)
                                                                                         AAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTCG     <  SRR4302540.2980007/94‑1 (MQ=60)
                                                                                         AAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTCG     <  SRR4302540.6562914/94‑1 (MQ=60)
                                                                                           AGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTCGTC   >  SRR4302540.9840035/1‑94 (MQ=60)
                                                                                            GCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTCGTCA  <  SRR4302540.8079051/94‑1 (MQ=60)
                                                                                             |                                                                                            
TGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTCGTCA  >  NC_000913/1490137‑1490322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑