Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,490,510 C→T S6L (TCA→TTA)  trg → methyl‑accepting chemotaxis protein III

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,490,5100CT99.7% 1233.1 / ‑4.2 336coding (17/1641 nt)trgmethyl‑accepting chemotaxis protein III
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (144/191);  minor base . (0/1);  total (144/192)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01

Only 100 of 349 total aligned reads displayed.

TTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTCACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTT  >  NC_000913/1490420‑1490599
                                                                                          |                                                                                         
 ttGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTtaca                                                                                        >  1:4001252/1‑93 (MQ=255)
  tGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAg                                                                                       <  2:9457665/93‑1 (MQ=255)
  tGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAg                                                                                       <  1:7328496/93‑1 (MQ=255)
   ggTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGc                                                                                      >  2:6943813/1‑93 (MQ=255)
   ggTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGc                                                                                      >  1:2074761/1‑93 (MQ=255)
   ggTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGc                                                                                      >  2:7914448/1‑93 (MQ=255)
    gTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTACCTTACAGca                                                                                     >  2:3697356/1‑92 (MQ=255)
     tCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGa                                                                                    <  2:3632196/93‑1 (MQ=255)
     tCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGa                                                                                    <  2:7742847/93‑1 (MQ=255)
      cATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGAt                                                                                   <  1:3171306/93‑1 (MQ=255)
      cATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGAt                                                                                   <  2:8341652/93‑1 (MQ=255)
       aTAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGAtt                                                                                  >  2:6679821/1‑93 (MQ=255)
        tAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTa                                                                                 <  1:7096369/93‑1 (MQ=255)
         aaGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAg                                                                                <  2:608706/93‑1 (MQ=255)
           gTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGt                                                                              <  2:8207605/93‑1 (MQ=255)
             aaTTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGttt                                                                            >  2:8938142/1‑93 (MQ=255)
               ttACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGGCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGttttt                                                                          >  1:2559445/1‑93 (MQ=255)
               ttACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGttttt                                                                          >  1:9880312/1‑93 (MQ=255)
                 aCCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTg                                                                        >  1:9737232/1‑93 (MQ=255)
                  ccGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGc                                                                       <  1:8069991/93‑1 (MQ=255)
                  ccGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGc                                                                       <  1:2794161/93‑1 (MQ=255)
                   cGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGca                                                                      >  1:10002059/1‑93 (MQ=255)
                    gTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcat                                                                     <  1:87201/93‑1 (MQ=255)
                     tCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatc                                                                    <  1:6906485/93‑1 (MQ=255)
                       aaGTGCCGATGACTTTCTATCAGGAGTAACCCTGGGCGAGAGACAACGGTAATGAATACACCTCACTTACAGCGATTAGGTTTTTTGcatcac                                                                  <  1:6027640/93‑1 (MQ=255)
                          tGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcacatc                                                               <  1:9545870/93‑1 (MQ=255)
                          tGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcacatc                                                               <  1:1055643/93‑1 (MQ=255)
                          tGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcacatc                                                               >  2:9192314/1‑93 (MQ=255)
                           gCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACCGCGATTAGGTTTTTTGcatcacatca                                                              >  1:69535/1‑93 (MQ=255)
                             cGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAgg                                                            >  2:1623510/1‑93 (MQ=255)
                              gATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggt                                                           >  2:5629086/1‑93 (MQ=255)
                              gATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggt                                                           >  1:1991923/1‑93 (MQ=255)
                               aTGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggtt                                                          >  2:8756787/1‑93 (MQ=255)
                                tGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggttg                                                         >  2:4079605/1‑93 (MQ=255)
                                agACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggttg                                                         <  1:2276019/92‑1 (MQ=255)
                                 gACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTGGGTTTTTTGCATCACATCAggttgg                                                        <  2:1994550/93‑1 (MQ=255)
                                 gACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggttgg                                                        <  1:7803611/93‑1 (MQ=255)
                                   cTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggttggtt                                                      >  2:6829130/1‑93 (MQ=255)
                                    attCTATCATGATTAAACCTGTACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTc                                                     <  2:990132/92‑1 (MQ=255)
                                     ttCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTcc                                                    <  1:8348288/93‑1 (MQ=255)
                                     ttCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTcc                                                    <  2:7272467/93‑1 (MQ=255)
                                     ttCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTcc                                                    >  1:3860334/1‑93 (MQ=255)
                                      tCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCg                                                   <  2:4542122/93‑1 (MQ=255)
                                      tCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCg                                                   <  1:6235224/93‑1 (MQ=255)
                                         aTCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTa                                                <  1:2765038/93‑1 (MQ=255)
                                         aTCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTa                                                >  1:2220106/1‑93 (MQ=255)
                                         aTCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTa                                                <  1:4555324/93‑1 (MQ=255)
                                         aTCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTa                                                <  1:7182179/93‑1 (MQ=255)
                                          tCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAt                                               >  2:1009640/1‑93 (MQ=255)
                                           cAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAtt                                              <  1:1664469/93‑1 (MQ=255)
                                            aGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAttt                                             <  1:2982594/93‑1 (MQ=255)
                                            aGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAttt                                             <  2:3392790/93‑1 (MQ=255)
                                            aGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAttt                                             <  1:7473991/93‑1 (MQ=255)
                                            aGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAttt                                             <  2:2434157/93‑1 (MQ=255)
                                              gAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGc                                           <  2:1395010/93‑1 (MQ=255)
                                              gAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGc                                           <  2:1797817/93‑1 (MQ=255)
                                               aGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGcc                                          <  2:5004781/93‑1 (MQ=255)
                                               aGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGcc                                          <  2:6324290/93‑1 (MQ=255)
                                               aGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGcc                                          <  2:1147695/93‑1 (MQ=255)
                                               aGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGATCCGTTATTTGcc                                          <  1:6718020/93‑1 (MQ=255)
                                                   aaCCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCa                                      <  2:2362271/93‑1 (MQ=255)
                                                   aaCCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCa                                      >  2:7351101/1‑93 (MQ=255)
                                                   aaCCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCa                                      >  1:8908903/1‑93 (MQ=255)
                                                     ccTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCAtt                                    >  1:9084962/1‑93 (MQ=255)
                                                       tGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCt                                  >  2:5077957/1‑93 (MQ=255)
                                                       tGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCt                                  >  1:1516123/1‑93 (MQ=255)
                                                        ggACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTa                                 <  1:8508586/93‑1 (MQ=255)
                                                        ggACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTa                                 <  2:9141273/93‑1 (MQ=255)
                                                         gACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAg                                <  1:4146901/93‑1 (MQ=255)
                                                           cGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGc                              >  2:1940466/1‑93 (MQ=255)
                                                              gagaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGt                           >  1:56598/1‑93 (MQ=255)
                                                              gagaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGt                           >  2:5401887/1‑93 (MQ=255)
                                                                 aCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATc                        <  2:2144675/93‑1 (MQ=255)
                                                                  cAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCt                       <  1:5378572/93‑1 (MQ=255)
                                                                  cAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCt                       >  2:3314654/1‑93 (MQ=255)
                                                                  cAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCt                       <  2:6140187/93‑1 (MQ=255)
                                                                   aaCGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCtt                      <  1:4905739/93‑1 (MQ=255)
                                                                    aCGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTa                     <  2:7526938/93‑1 (MQ=255)
                                                                    aCGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTa                     <  2:5597850/93‑1 (MQ=255)
                                                                       gTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGtt                  >  2:8421931/1‑93 (MQ=255)
                                                                          aTGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTa               >  1:1889747/1‑93 (MQ=255)
                                                                          aTGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTa               <  2:4358496/93‑1 (MQ=255)
                                                                          aTGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTa               >  2:2937811/1‑93 (MQ=255)
                                                                           tGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTAt              >  2:2767270/1‑93 (MQ=255)
                                                                           agAATACAACTCCCTTACAGCGATTAGGTGTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTAt              <  1:4769176/92‑1 (MQ=255)
                                                                             aaTACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTc            >  1:4454037/1‑93 (MQ=255)
                                                                             aaTACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTc            >  2:4678880/1‑93 (MQ=255)
                                                                             aaTACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTc            <  2:5725617/93‑1 (MQ=255)
                                                                              aTACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCg           >  1:9445155/1‑93 (MQ=255)
                                                                              aTACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCg           >  1:8622849/1‑93 (MQ=255)
                                                                                 cAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCAt        >  1:3348253/1‑93 (MQ=255)
                                                                                  aaCTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCAtt       <  1:6491569/93‑1 (MQ=255)
                                                                                   aCTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTa      <  2:3977155/93‑1 (MQ=255)
                                                                                   aCTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTa      >  2:9530494/1‑93 (MQ=255)
                                                                                    cTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTaa     <  2:4275541/93‑1 (MQ=255)
                                                                                      cccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGt   <  1:3521602/93‑1 (MQ=255)
                                                                                      cccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGt   >  2:8624895/1‑93 (MQ=255)
                                                                                      cccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGt   >  1:9769136/1‑93 (MQ=255)
                                                                                      cccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGt   <  1:1095631/93‑1 (MQ=255)
                                                                                       ccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGtt  >  1:4085825/1‑93 (MQ=255)
                                                                                          |                                                                                         
TTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTCACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTT  >  NC_000913/1490420‑1490599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTTTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTCACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCAGC  >  NC_000913/1490417‑1490603
                                                                                             |                                                                                             
GTTTTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTT                                                                                               <  SRR4302540.5045266/94‑1 (MQ=60)
GTTTTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTT                                                                                               <  SRR4302540.1923629/94‑1 (MQ=60)
GTTTTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTT                                                                                               <  SRR4302540.8553176/94‑1 (MQ=60)
GTTTTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTT                                                                                               <  SRR4302540.9271281/94‑1 (MQ=60)
GTTTTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTT                                                                                               >  SRR4302540.5466327/1‑94 (MQ=60)
  TTTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTAC                                                                                             <  SRR4302540.5820044/94‑1 (MQ=60)
   TTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACA                                                                                            >  SRR4302540.4044316/1‑94 (MQ=60)
   TTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACA                                                                                            <  SRR4302540.488958/94‑1 (MQ=60)
   TTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACA                                                                                            <  SRR4302540.7420585/94‑1 (MQ=60)
     TGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGC                                                                                          <  SRR4302540.2028063/94‑1 (MQ=60)
     TGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGC                                                                                          <  SRR4302540.8868540/94‑1 (MQ=60)
     TGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGC                                                                                          >  SRR4302540.2097066/1‑94 (MQ=60)
     TGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGC                                                                                          <  SRR4302540.7410314/94‑1 (MQ=60)
      GGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCG                                                                                         <  SRR4302540.1037335/94‑1 (MQ=60)
      GGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCG                                                                                         >  SRR4302540.8211165/1‑94 (MQ=60)
        TCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGAT                                                                                       >  SRR4302540.2695207/1‑94 (MQ=60)
        TCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGAT                                                                                       >  SRR4302540.9240935/1‑94 (MQ=60)
         CATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATT                                                                                      >  SRR4302540.1712708/1‑94 (MQ=60)
         CATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATT                                                                                      <  SRR4302540.3205778/94‑1 (MQ=60)
          ATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTA                                                                                     >  SRR4302540.10144395/1‑94 (MQ=60)
           TAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAG                                                                                    <  SRR4302540.7175341/94‑1 (MQ=60)
           TAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAG                                                                                    >  SRR4302540.3782225/1‑94 (MQ=60)
              GTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTT                                                                                 <  SRR4302540.9762878/94‑1 (MQ=60)
              GTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTT                                                                                 <  SRR4302540.644122/94‑1 (MQ=60)
               TAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTT                                                                                <  SRR4302540.4936476/94‑1 (MQ=60)
               TAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTT                                                                                <  SRR4302540.4342177/94‑1 (MQ=60)
               TAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTT                                                                                >  SRR4302540.7045226/1‑94 (MQ=60)
               TAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTT                                                                                >  SRR4302540.7045389/1‑94 (MQ=60)
               TAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTT                                                                                >  SRR4302540.1106195/1‑94 (MQ=60)
               TAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTT                                                                                >  SRR4302540.3122297/1‑94 (MQ=60)
                 ATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGGCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTT                                                                              >  SRR4302540.2587033/1‑94 (MQ=60)
                 ATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTT                                                                              >  SRR4302540.9995689/1‑94 (MQ=60)
                 ATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTT                                                                              >  SRR4302540.6948313/1‑94 (MQ=60)
                 ATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTT                                                                              >  SRR4302540.9641266/1‑94 (MQ=60)
                  TTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTT                                                                             <  SRR4302540.5871493/94‑1 (MQ=60)
                  TTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTT                                                                             <  SRR4302540.9016536/94‑1 (MQ=60)
                  TTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTT                                                                             <  SRR4302540.2879505/94‑1 (MQ=60)
                  TTACCGTCAAGTGCAGATGACTTGTTATCAAGAGTAAACCTGGACGAGAGACAAAAGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTT                                                                             <  SRR4302540.5871494/94‑1 (MQ=60)
                   TACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTG                                                                            >  SRR4302540.9851549/1‑94 (MQ=60)
                     CCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCA                                                                          <  SRR4302540.8163626/94‑1 (MQ=60)
                     CCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCA                                                                          >  SRR4302540.10118574/1‑94 (MQ=60)
                     CCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCA                                                                          <  SRR4302540.2824328/94‑1 (MQ=60)
                       cgCAAGTGCCGATGACTTTCTATCCGGAGTAATCCTGGACGAGAGACAACGGTAATGAATACAACTCCCGTACAACGATTAGGTTTTTTGCATC                                                                        <  SRR4302540.88130/92‑1 (MQ=60)
                       GTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATC                                                                        <  SRR4302540.88126/94‑1 (MQ=60)
                       GTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATC                                                                        >  SRR4302540.7309448/1‑94 (MQ=60)
                        TCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCA                                                                       <  SRR4302540.6983286/94‑1 (MQ=60)
                        TCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCA                                                                       <  SRR4302540.2181618/94‑1 (MQ=60)
                         CAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCAC                                                                      <  SRR4302540.8818907/94‑1 (MQ=60)
                         CAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCAC                                                                      <  SRR4302540.4259311/94‑1 (MQ=60)
                          AAGTGCCGATGACTTTCTATCAGGAGTAACCCTGGGCGAGAGACAACGGTAATGAATACACCTCACTTACAGCGATTAGGTTTTTTGCATCACA                                                                     <  SRR4302540.6094526/94‑1 (MQ=60)
                          AAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACA                                                                     >  SRR4302540.10072242/1‑94 (MQ=60)
                            GTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATC                                                                   <  SRR4302540.7353432/94‑1 (MQ=60)
                             TGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACCGCGATTAGGTTTTTTGCATCACATCA                                                                  >  SRR4302540.70233/1‑94 (MQ=60)
                             TGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCA                                                                  >  SRR4302540.70235/1‑94 (MQ=60)
                             TGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCA                                                                  <  SRR4302540.7546458/94‑1 (MQ=60)
                             TGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCA                                                                  <  SRR4302540.6937237/94‑1 (MQ=60)
                             TGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCA                                                                  <  SRR4302540.1066385/94‑1 (MQ=60)
                             TGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCA                                                                  <  SRR4302540.9658809/94‑1 (MQ=60)
                             TGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTCTTGCATCACATCA                                                                  <  SRR4302540.1066386/94‑1 (MQ=60)
                              GCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAG                                                                 <  SRR4302540.5103931/94‑1 (MQ=60)
                              GCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAG                                                                 <  SRR4302540.8636709/94‑1 (MQ=60)
                              GCCGATGACTCTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAG                                                                 <  SRR4302540.5510676/94‑1 (MQ=60)
                               CCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGG                                                                >  SRR4302540.410437/1‑94 (MQ=60)
                               CCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGAGATTAGGTTTTTTGAATCACATCAGG                                                                >  SRR4302540.410438/1‑94 (MQ=60)
                                CGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGT                                                               >  SRR4302540.2013510/1‑94 (MQ=60)
                                CGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGT                                                               <  SRR4302540.790785/94‑1 (MQ=60)
                                 GATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTT                                                              <  SRR4302540.4171941/94‑1 (MQ=60)
                                  ATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTG                                                             >  SRR4302540.6764628/1‑94 (MQ=60)
                                  ATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTG                                                             <  SRR4302540.9898077/94‑1 (MQ=60)
                                   TGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGG                                                            <  SRR4302540.2300457/94‑1 (MQ=60)
                                   AGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGG                                                            <  SRR4302540.2300458/94‑1 (MQ=60)
                                    GACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGT                                                           <  SRR4302540.4066653/94‑1 (MQ=60)
                                    GACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGT                                                           <  SRR4302540.7894811/94‑1 (MQ=60)
                                    GACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGT                                                           >  SRR4302540.6473271/1‑94 (MQ=60)
                                      CTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTC                                                         >  SRR4302540.1972125/1‑94 (MQ=60)
                                       TTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCC                                                        <  SRR4302540.1358287/94‑1 (MQ=60)
                                       TTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCC                                                        >  SRR4302540.3902292/1‑94 (MQ=60)
                                        TTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCG                                                       <  SRR4302540.8445183/94‑1 (MQ=60)
                                        TTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCG                                                       <  SRR4302540.8445181/94‑1 (MQ=60)
                                        TTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCG                                                       >  SRR4302540.478172/1‑94 (MQ=60)
                                         TCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGT                                                      <  SRR4302540.2351748/94‑1 (MQ=60)
                                         TCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGT                                                      <  SRR4302540.6304574/94‑1 (MQ=60)
                                          CTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTT                                                     >  SRR4302540.9660696/1‑94 (MQ=60)
                                          CTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTT                                                     >  SRR4302540.8732525/1‑94 (MQ=60)
                                          CTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTT                                                     <  SRR4302540.4551469/94‑1 (MQ=60)
                                          CGATCAGGAGAAAACCTGGACGAGAGTCAACGGTAATTAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTT                                                     <  SRR4302540.2299676/94‑1 (MQ=60)
                                           TATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTA                                                    >  SRR4302540.8541317/1‑94 (MQ=60)
                                           TATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTA                                                    >  SRR4302540.2244047/1‑94 (MQ=60)
                                            ATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAT                                                   <  SRR4302540.6485543/94‑1 (MQ=60)
                                            ATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAT                                                   <  SRR4302540.7262249/94‑1 (MQ=60)
                                            ATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAT                                                   >  SRR4302540.7251449/1‑94 (MQ=60)
                                            ATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAT                                                   <  SRR4302540.2794915/94‑1 (MQ=60)
                                            ATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAT                                                   <  SRR4302540.3219985/94‑1 (MQ=60)
                                            ATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAT                                                   <  SRR4302540.4604576/94‑1 (MQ=60)
                                             TCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATT                                                  <  SRR4302540.6123971/94‑1 (MQ=60)
                                              CAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTT                                                 <  SRR4302540.1682592/94‑1 (MQ=60)
                                               AGGAGTAAACCTGGACGAGAGACAACTGTAATGAATACAACTCCCTTACAGCGAGTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTG                                                <  SRR4302540.1410906/94‑1 (MQ=60)
                                               AGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTG                                                <  SRR4302540.3015516/94‑1 (MQ=60)
                                               AGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTG                                                <  SRR4302540.7557392/94‑1 (MQ=60)
                                               AGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTG                                                <  SRR4302540.1410904/94‑1 (MQ=60)
                                                GGAGTAACCCTGGACGAGCGACAACGGTACTGCATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGC                                               <  SRR4302540.9060096/94‑1 (MQ=60)
                                                 GAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCC                                              <  SRR4302540.5195811/94‑1 (MQ=60)
                                                  AGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACCGCGATTAGGTTTTTTGCCTCACAACAGCTGGGTTCCGTTATTgccct                                             >  SRR4302540.4181915/1‑89 (MQ=60)
                                                  AGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCT                                             >  SRR4302540.4181916/1‑94 (MQ=60)
                                                  AGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGATCCGTTATTTGCCT                                             <  SRR4302540.6792138/94‑1 (MQ=60)
                                                   GTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTG                                            <  SRR4302540.7798271/94‑1 (MQ=60)
                                                   GTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTG                                            >  SRR4302540.3803406/1‑94 (MQ=60)
                                                   GTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTG                                            >  SRR4302540.5380513/1‑94 (MQ=60)
                                                   GTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTG                                            <  SRR4302540.779744/94‑1 (MQ=60)
                                                    TAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGC                                           >  SRR4302540.7377330/1‑94 (MQ=60)
                                                     AAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCA                                          >  SRR4302540.9012066/1‑94 (MQ=60)
                                                      AACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCAT                                         <  SRR4302540.1811849/94‑1 (MQ=60)
                                                       ACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATT                                        >  SRR4302540.9194113/1‑94 (MQ=60)
                                                        CCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTC                                       <  SRR4302540.5842823/94‑1 (MQ=60)
                                                         CTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCT                                      >  SRR4302540.1532892/1‑94 (MQ=60)
                                                         CTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCT                                      >  SRR4302540.8209718/1‑94 (MQ=60)
                                                         CTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCT                                      >  SRR4302540.2813641/1‑94 (MQ=60)
                                                         CTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCT                                      <  SRR4302540.2067429/94‑1 (MQ=60)
                                                         CTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTGTTTGCGTCACATCAGGTTGGTTCCGTTATTTTCCTTCATTCG                                      >  SRR4302540.7025879/1‑94 (MQ=60)
                                                          TGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTA                                     >  SRR4302540.7008923/1‑94 (MQ=60)
                                                           GGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAG                                    <  SRR4302540.8607472/94‑1 (MQ=60)
                                                           GGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAG                                    <  SRR4302540.7185472/94‑1 (MQ=60)
                                                           GGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAG                                    >  SRR4302540.2119931/1‑94 (MQ=60)
                                                            GACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGG                                   <  SRR4302540.4191782/94‑1 (MQ=60)
                                                            GACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGG                                   >  SRR4302540.2727672/1‑94 (MQ=60)
                                                            GACGAGAGAAAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGG                                   <  SRR4302540.3510714/94‑1 (MQ=60)
                                                             GCGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTGTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGC                                  <  SRR4302540.2725309/94‑1 (MQ=60)
                                                             ACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGC                                  <  SRR4302540.8660390/94‑1 (MQ=60)
                                                             ACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGC                                  <  SRR4302540.2424124/94‑1 (MQ=60)
                                                              CGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCG                                 <  SRR4302540.3385900/94‑1 (MQ=60)
                                                              CGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCG                                 >  SRR4302540.5836730/1‑94 (MQ=60)
                                                               GAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGG                                <  SRR4302540.7909233/94‑1 (MQ=60)
                                                               GAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGG                                <  SRR4302540.8250725/94‑1 (MQ=60)
                                                               GAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGG                                <  SRR4302540.3919731/94‑1 (MQ=60)
                                                                AGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGT                               >  SRR4302540.57165/1‑94 (MQ=60)
                                                                AGAGACAACGGTAATGAATACAACTCACTTACAGCGATTAGGGTTTTTGCTTCACATCAGGTTGGTTACGTTATTTGCATGCATTCTAGGAGGT                               >  SRR4302540.6979359/1‑94 (MQ=60)
                                                                 GAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTA                              <  SRR4302540.989172/94‑1 (MQ=60)
                                                                  AGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTAT                             <  SRR4302540.9618437/94‑1 (MQ=60)
                                                                  AGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTAT                             <  SRR4302540.4516700/94‑1 (MQ=60)
                                                                  AGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTAT                             <  SRR4302540.7788449/94‑1 (MQ=60)
                                                                  AGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTAT                             <  SRR4302540.9523462/94‑1 (MQ=60)
                                                                    ACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCT                           <  SRR4302540.2034805/94‑1 (MQ=60)
                                                                     CAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTT                          <  SRR4302540.4236843/94‑1 (MQ=60)
                                                                     CAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTT                          <  SRR4302540.5437723/94‑1 (MQ=60)
                                                                      AACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTA                         <  SRR4302540.4958539/94‑1 (MQ=60)
                                                                      AACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTA                         >  SRR4302540.8905777/1‑94 (MQ=60)
                                                                       ACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAG                        <  SRR4302540.1547260/94‑1 (MQ=60)
                                                                       ACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAG                        <  SRR4302540.3936217/94‑1 (MQ=60)
                                                                        CGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGT                       >  SRR4302540.9883328/1‑94 (MQ=60)
                                                                        CGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGT                       >  SRR4302540.9883516/1‑94 (MQ=60)
                                                                         GGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTT                      >  SRR4302540.3166148/1‑94 (MQ=60)
                                                                          GTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTC                     <  SRR4302540.2822344/94‑1 (MQ=60)
                                                                          GTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTC                     <  SRR4302540.3718772/94‑1 (MQ=60)
                                                                            AATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTA                   >  SRR4302540.1910432/1‑94 (MQ=60)
                                                                            AATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATATTAGTTCTA                   >  SRR4302540.9823898/1‑94 (MQ=60)
                                                                             ATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTAT                  >  SRR4302540.32965/1‑94 (MQ=60)
                                                                              TGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATT                 >  SRR4302540.477961/1‑94 (MQ=60)
                                                                              TGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATT                 <  SRR4302540.6198016/94‑1 (MQ=60)
                                                                              AGAATACAACTCCCTTACAGCGATTAGGTGTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATT                 <  SRR4302540.4820111/94‑1 (MQ=60)
                                                                               GAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTC                >  SRR4302540.4502319/1‑94 (MQ=60)
                                                                               GAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTC                <  SRR4302540.195113/94‑1 (MQ=60)
                                                                                AATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCG               >  SRR4302540.9557286/1‑94 (MQ=60)
                                                                                AATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCG               >  SRR4302540.8723016/1‑94 (MQ=60)
                                                                                AATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCG               >  SRR4302540.8723015/1‑94 (MQ=60)
                                                                                AATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCG               <  SRR4302540.9989521/94‑1 (MQ=60)
                                                                                AATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCG               >  SRR4302540.1589693/1‑94 (MQ=60)
                                                                                   ACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCAT            <  SRR4302540.2264153/94‑1 (MQ=60)
                                                                                   ACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCAT            >  SRR4302540.3384969/1‑94 (MQ=60)
                                                                                    CAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATT           <  SRR4302540.5510395/94‑1 (MQ=60)
                                                                                    CAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATT           <  SRR4302540.4697733/94‑1 (MQ=60)
                                                                                     AACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTA          <  SRR4302540.6563760/94‑1 (MQ=60)
                                                                                     AACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTA          <  SRR4302540.6563762/94‑1 (MQ=60)
                                                                                       CTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAG        <  SRR4302540.2934821/94‑1 (MQ=60)
                                                                                       CTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAG        <  SRR4302540.2934820/94‑1 (MQ=60)
                                                                                       CTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAG        >  SRR4302540.1770776/1‑94 (MQ=60)
                                                                                        TCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGT       >  SRR4302540.3375685/1‑94 (MQ=60)
                                                                                        TCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGT       >  SRR4302540.9883685/1‑94 (MQ=60)
                                                                                         CCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTT      >  SRR4302540.4129891/1‑94 (MQ=60)
                                                                                         CCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTT      <  SRR4302540.1106895/94‑1 (MQ=60)
                                                                                         CCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTT      <  SRR4302540.3559985/94‑1 (MQ=60)
                                                                                          CCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTC     <  SRR4302540.9514448/94‑1 (MQ=60)
                                                                                           CTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCA    <  SRR4302540.3785973/94‑1 (MQ=60)
                                                                                           CTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCA    <  SRR4302540.8457010/94‑1 (MQ=60)
                                                                                           CTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCA    >  SRR4302540.577210/1‑94 (MQ=60)
                                                                                           CTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCA    <  SRR4302540.3295971/94‑1 (MQ=60)
                                                                                           CTTACAGCGATTAGGTGTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCA    <  SRR4302540.7853772/94‑1 (MQ=60)
                                                                                            TTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCAG   <  SRR4302540.2454323/94‑1 (MQ=60)
                                                                                            TTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCAG   >  SRR4302540.3977321/1‑94 (MQ=60)
                                                                                             TACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCAGC  <  SRR4302540.7153571/94‑1 (MQ=60)
                                                                                             TACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCAGC  >  SRR4302540.4989808/1‑94 (MQ=60)
                                                                                             TACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCAGC  <  SRR4302540.4201123/94‑1 (MQ=60)
                                                                                             |                                                                                             
GTTTTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTCACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTTCAGC  >  NC_000913/1490417‑1490603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑