Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCTGAAGTAGCGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGTCGTCTCTTT  >  NC_000913/1492528‑1492714
                                                                                             |                                                                                             
CCTGAAGTAGCGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGA                                                                                               >  SRR4302540.3204152/1‑94 (MQ=60)
  TGAAGTAGCGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCA                                                                                             >  SRR4302540.1560941/1‑94 (MQ=60)
  TGAAGTAGCGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACA                                                                                             <  SRR4302540.766743/94‑1 (MQ=60)
   GAAGTAGCGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCAT                                                                                            >  SRR4302540.5452332/1‑94 (MQ=60)
     AGTAGCGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCC                                                                                          >  SRR4302540.6976900/1‑94 (MQ=60)
       GAGCGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGA                                                                                        <  SRR4302540.7313874/94‑1 (MQ=60)
        AGCGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGAC                                                                                       >  SRR4302540.3255607/1‑94 (MQ=60)
        AGCGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGAC                                                                                       >  SRR4302540.8046852/1‑94 (MQ=60)
         GCGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACC                                                                                      >  SRR4302540.2998867/1‑94 (MQ=60)
          CGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCA                                                                                     >  SRR4302540.629398/1‑94 (MQ=60)
            GGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAAT                                                                                   <  SRR4302540.5475065/94‑1 (MQ=60)
             GTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATG                                                                                  <  SRR4302540.3617104/94‑1 (MQ=60)
             GTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATG                                                                                  <  SRR4302540.4889340/94‑1 (MQ=60)
             GTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATG                                                                                  <  SRR4302540.3617103/94‑1 (MQ=60)
             GTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATG                                                                                  >  SRR4302540.7782360/1‑94 (MQ=60)
              TGATTAGGGCGGACACCCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGC                                                                                 <  SRR4302540.7717547/94‑1 (MQ=60)
              TGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGC                                                                                 >  SRR4302540.5790350/1‑94 (MQ=60)
              TGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGC                                                                                 >  SRR4302540.344322/1‑94 (MQ=60)
               GATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCG                                                                                >  SRR4302540.3451776/1‑94 (MQ=60)
               GATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCC                                                                                <  SRR4302540.5370272/94‑1 (MQ=60)
               GATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCC                                                                                <  SRR4302540.5370271/94‑1 (MQ=60)
               GATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCC                                                                                >  SRR4302540.1780383/1‑94 (MQ=60)
               GATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCC                                                                                <  SRR4302540.4637927/94‑1 (MQ=60)
               GATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATCCC                                                                                >  SRR4302540.1780382/1‑94 (MQ=60)
                ATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCA                                                                               >  SRR4302540.175096/1‑94 (MQ=60)
                ATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCA                                                                               >  SRR4302540.269539/1‑94 (MQ=60)
                ATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATACGACCAATGCCG                                                                               >  SRR4302540.4749126/1‑94 (MQ=60)
                ATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGACCGGTCATCAGTTCAGGATCTGAAATCCGACCAATGCCA                                                                               >  SRR4302540.175097/1‑94 (MQ=60)
                ATTAGGCCGTACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCG                                                                               <  SRR4302540.7492899/94‑1 (MQ=60)
                 TTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGA                                                                              >  SRR4302540.1591960/1‑94 (MQ=60)
                  TAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGAT                                                                             >  SRR4302540.8693562/1‑94 (MQ=60)
                   AGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATA                                                                            >  SRR4302540.1262688/1‑94 (MQ=60)
                    GGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATAT                                                                           >  SRR4302540.3508368/1‑94 (MQ=60)
                     GGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATC                                                                          <  SRR4302540.4507083/94‑1 (MQ=60)
                     GGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATC                                                                          <  SRR4302540.3755632/94‑1 (MQ=60)
                      GCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCG                                                                         <  SRR4302540.3331742/94‑1 (MQ=60)
                        GGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGAT                                                                       >  SRR4302540.5969352/1‑94 (MQ=60)
                          ACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTT                                                                     >  SRR4302540.4648176/1‑94 (MQ=60)
                           CAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTC                                                                    >  SRR4302540.3361337/1‑94 (MQ=60)
                           CAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTC                                                                    >  SRR4302540.8763236/1‑94 (MQ=60)
                            AACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCC                                                                   >  SRR4302540.2230782/1‑94 (MQ=60)
                            AACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCC                                                                   >  SRR4302540.8339558/1‑94 (MQ=60)
                             ACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCC                                                                  >  SRR4302540.5999678/1‑94 (MQ=60)
                              CCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCC                                                                 >  SRR4302540.9293261/1‑94 (MQ=60)
                               CGGCTTCAACGATTCAAAAAACAGCTGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGCCCAATGCCGATATCGATTTCCCCG                                                                <  SRR4302540.3592429/94‑1 (MQ=60)
                               CAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCG                                                                <  SRR4302540.5308527/94‑1 (MQ=60)
                               CAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGCTTTCCCCG                                                                >  SRR4302540.4612005/1‑94 (MQ=60)
                               CAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCG                                                                <  SRR4302540.105431/94‑1 (MQ=60)
                                  CTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTT                                                             <  SRR4302540.7511888/94‑1 (MQ=60)
                                   TTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTT                                                            >  SRR4302540.6432108/1‑94 (MQ=60)
                                   TTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTT                                                            >  SRR4302540.5378741/1‑94 (MQ=60)
                                    TCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTT                                                           >  SRR4302540.5913802/1‑94 (MQ=60)
                                    TCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTT                                                           >  SRR4302540.5182955/1‑94 (MQ=60)
                                    TCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTT                                                           >  SRR4302540.3659384/1‑94 (MQ=60)
                                      AACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTA                                                         <  SRR4302540.8020769/94‑1 (MQ=60)
                                      AACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTA                                                         <  SRR4302540.1511509/94‑1 (MQ=60)
                                       ACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAA                                                        <  SRR4302540.4243241/94‑1 (MQ=60)
                                        CGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAA                                                       >  SRR4302540.6604733/1‑94 (MQ=60)
                                        CGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAA                                                       >  SRR4302540.6842925/1‑94 (MQ=60)
                                         GATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAAC                                                      <  SRR4302540.9404216/94‑1 (MQ=60)
                                         GATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAAC                                                      >  SRR4302540.10026373/1‑94 (MQ=60)
                                         GATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAAC                                                      >  SRR4302540.5622717/1‑94 (MQ=60)
                                          ATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACC                                                     >  SRR4302540.5312705/1‑94 (MQ=60)
                                          ATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACC                                                     <  SRR4302540.7535825/94‑1 (MQ=60)
                                          ATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACC                                                     <  SRR4302540.4573214/94‑1 (MQ=60)
                                          ATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACC                                                     <  SRR4302540.2230341/94‑1 (MQ=60)
                                          ATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACC                                                     >  SRR4302540.1203468/1‑94 (MQ=60)
                                          ATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACC                                                     >  SRR4302540.879700/1‑94 (MQ=60)
                                           TTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCC                                                    <  SRR4302540.5041087/94‑1 (MQ=60)
                                           TTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCC                                                    <  SRR4302540.3362242/94‑1 (MQ=60)
                                           TTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCC                                                    >  SRR4302540.2723884/1‑94 (MQ=60)
                                               AGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCA                                                >  SRR4302540.8157076/1‑94 (MQ=60)
                                               AGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCA                                                >  SRR4302540.5521122/1‑94 (MQ=60)
                                               AGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCACTGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCA                                                >  SRR4302540.8740003/1‑94 (MQ=60)
                                               AGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCA                                                >  SRR4302540.3031528/1‑94 (MQ=60)
                                               AGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCA                                                >  SRR4302540.5202069/1‑94 (MQ=60)
                                                 AAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGA                                              <  SRR4302540.6786874/94‑1 (MQ=60)
                                                 AAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGA                                              >  SRR4302540.8104704/1‑94 (MQ=60)
                                                   ACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAAT                                            <  SRR4302540.4436074/94‑1 (MQ=60)
                                                   ACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAAT                                            <  SRR4302540.3575094/94‑1 (MQ=60)
                                                   ACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAAT                                            >  SRR4302540.828329/1‑94 (MQ=60)
                                                   ACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAAT                                            >  SRR4302540.5700155/1‑94 (MQ=60)
                                                       CAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATA                                        <  SRR4302540.2860559/94‑1 (MQ=60)
                                                       CAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATA                                        <  SRR4302540.6788591/94‑1 (MQ=60)
                                                       CAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATA                                        >  SRR4302540.1325054/1‑94 (MQ=60)
                                                        AGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAG                                       >  SRR4302540.645686/1‑94 (MQ=60)
                                                        AGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAG                                       <  SRR4302540.5780734/94‑1 (MQ=60)
                                                        AGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAG                                       <  SRR4302540.2602435/94‑1 (MQ=60)
                                                        AGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAG                                       <  SRR4302540.3277815/94‑1 (MQ=60)
                                                         GTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGG                                      <  SRR4302540.2994553/94‑1 (MQ=60)
                                                           TCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGT                                    >  SRR4302540.7823424/1‑94 (MQ=60)
                                                             GTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTA                                  >  SRR4302540.1936956/1‑94 (MQ=60)
                                                             GTAATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTA                                  <  SRR4302540.1052665/94‑1 (MQ=60)
                                                             GTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTA                                  >  SRR4302540.2029111/1‑94 (MQ=60)
                                                             GTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTA                                  >  SRR4302540.322187/1‑94 (MQ=60)
                                                              TAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTAC                                 >  SRR4302540.5770290/1‑94 (MQ=60)
                                                              TAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTAC                                 >  SRR4302540.3697288/1‑94 (MQ=60)
                                                               AATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACT                                <  SRR4302540.1364524/94‑1 (MQ=60)
                                                               AATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACT                                <  SRR4302540.9452394/94‑1 (MQ=60)
                                                               AATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACT                                >  SRR4302540.2315433/1‑94 (MQ=60)
                                                               AATTAAGCCCGGTCATAAGTTCAGGATCTGGCATGCTCCCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCAGAGGGTTACT                                <  SRR4302540.1364523/94‑1 (MQ=60)
                                                                ATTAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTC                               >  SRR4302540.7763151/1‑94 (MQ=60)
                                                                  TAAGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCAT                             <  SRR4302540.5989200/94‑1 (MQ=60)
                                                                    AGCCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTG                           >  SRR4302540.3891053/1‑94 (MQ=60)
                                                                      CCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTC                         <  SRR4302540.924830/94‑1 (MQ=60)
                                                                      CCCGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGATTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTC                         <  SRR4302540.921740/94‑1 (MQ=60)
                                                                      CCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTC                         >  SRR4302540.650116/1‑94 (MQ=60)
                                                                        CGGTCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGC                       >  SRR4302540.8356064/1‑94 (MQ=60)
                                                                        CGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGC                       <  SRR4302540.1627889/94‑1 (MQ=60)
                                                                           TCATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAAC                    <  SRR4302540.8900288/94‑1 (MQ=60)
                                                                           TCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGATTTTAAACCCGCCAGAATCATAGCGTTACTCATTGTCGCAAC                    >  SRR4302540.3869177/1‑94 (MQ=60)
                                                                             ATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTT                  >  SRR4302540.7266352/1‑94 (MQ=60)
                                                                             ATCAGTTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTT                  >  SRR4302540.9350225/1‑94 (MQ=60)
                                                                             ATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTT                  <  SRR4302540.979853/94‑1 (MQ=60)
                                                                                AGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCA               <  SRR4302540.6599732/94‑1 (MQ=60)
                                                                                AGTTCAGAATCTGACAGCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCA               <  SRR4302540.6599733/94‑1 (MQ=60)
                                                                                  GTCAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAG             <  SRR4302540.7349698/94‑1 (MQ=60)
                                                                                    CAGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGT           <  SRR4302540.2431366/94‑1 (MQ=60)
                                                                                    CAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGT           >  SRR4302540.6391348/1‑94 (MQ=60)
                                                                                    CAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGT           <  SRR4302540.4602482/94‑1 (MQ=60)
                                                                                     AGGATCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGTC          >  SRR4302540.9275919/1‑94 (MQ=60)
                                                                                     AGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGTC          >  SRR4302540.2828110/1‑94 (MQ=60)
                                                                                      GGATCTGGCATCCGACCAATGCCAATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGTCG         <  SRR4302540.7292378/94‑1 (MQ=60)
                                                                                         TCTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAGCCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGTCGTCT      <  SRR4302540.1043314/94‑1 (MQ=60)
                                                                                          CTGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGTCGTCTC     >  SRR4302540.4034527/1‑94 (MQ=60)
                                                                                           TGGCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGTCGTCTCT    <  SRR4302540.8616077/94‑1 (MQ=60)
                                                                                            GACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGTCGTCTCTT   >  SRR4302540.8632/1‑94 (MQ=60)
                                                                                             GCATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGTCGTCTCTTT  <  SRR4302540.311873/94‑1 (MQ=60)
                                                                                             |                                                                                             
CCTGAAGTAGCGGGTGATTAGGGCGGACAACCAGCTTCAACGATTCAAGAAACAGCAGTTCGTAATTAAGCCCGGTCATCAGTTCAGGATCTGACATCCGACCAATGCCGATATCGATTTCCCCGGTTTTTAAACCCGCCAGAATCATAGGGTTACTCATTGTCGCAACTTGCAAGGTCGTCTCTTT  >  NC_000913/1492528‑1492714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑