Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,497,599	T→C	H292R (CAC→CGC)	b1428 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,497,599	0	T	C	100.0%	817.1 / NA	254	H292R (CAC→CGC)	b1428	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (138/116); total (138/116)

Only 100 of 272 total aligned reads displayed.

AGCGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGTGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGAATC  >  NC_000913/1497509‑1497688

aGCGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCgg                                                                                         <  2:6232604/93‑1 (MQ=255)

  cggcgTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTc                                                                                       <  2:7229374/93‑1 (MQ=255)

   ggcgTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCg                                                                                      >  1:8537678/1‑93 (MQ=255)

   ggcgTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCg                                                                                      <  1:1925185/93‑1 (MQ=255)

   ggcgTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCg                                                                                      >  1:8785085/1‑93 (MQ=255)

   ggcgTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCg                                                                                      >  1:558614/1‑93 (MQ=255)

    gcgTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCgg                                                                                     >  1:3760220/1‑93 (MQ=255)

     tgTTCGCGTAATACGCTCCTCGCCGTTAATGGCTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGcggtcggt                                                                                    <  1:1635943/92‑1 (MQ=255)

     cgTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGcggtcggt                                                                                    <  1:10004183/93‑1 (MQ=255)

     cgTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGcggtcggt                                                                                    >  1:5076341/1‑93 (MQ=255)

     cgTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGcggtcggt                                                                                    <  1:7635955/93‑1 (MQ=255)

      gTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGtt                                                                                   >  2:4208046/1‑93 (MQ=255)

      gTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGtt                                                                                   >  1:3683622/1‑93 (MQ=255)

       ttCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTa                                                                                  >  2:2944086/1‑93 (MQ=255)

        tCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTaa                                                                                 <  2:9662245/93‑1 (MQ=255)

          gcgTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACt                                                                               <  1:2625890/93‑1 (MQ=255)

            gTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTcc                                                                             <  1:4206880/93‑1 (MQ=255)

             tAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCca                                                                            >  1:5444084/1‑93 (MQ=255)

              aaTGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCcac                                                                           >  2:1266034/1‑93 (MQ=255)

              aaTGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCcac                                                                           <  2:9476721/93‑1 (MQ=255)

              aaTGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCcac                                                                           <  1:7765349/93‑1 (MQ=255)

               aTGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCcaca                                                                          >  1:8301309/1‑93 (MQ=255)

                tGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACAt                                                                         <  2:3581861/93‑1 (MQ=255)

                   gcTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGt                                                                      >  2:5370146/1‑93 (MQ=255)

                    ctcctcGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGtt                                                                     <  2:942316/93‑1 (MQ=255)

                     tcctcGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGttt                                                                    >  2:4430980/1‑93 (MQ=255)

                     tcctcGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGttt                                                                    >  2:3773574/1‑93 (MQ=255)

                      cctcGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGtttt                                                                   >  2:1998668/1‑93 (MQ=255)

                      cctcGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGtttt                                                                   >  1:1526250/1‑93 (MQ=255)

                      cctcGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGCTAACTCCACATGGtttt                                                                   >  1:4460221/1‑93 (MQ=255)

                       ctcGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTc                                                                  <  2:7159067/93‑1 (MQ=255)

                        tcGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCa                                                                 >  1:6933471/1‑93 (MQ=255)

                        tcGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGACGGGTAACTACACATGGatttga                                                                 >  2:5185168/1‑91 (MQ=255)

                         cGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCaa                                                                <  2:4064159/93‑1 (MQ=255)

                         cGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCaa                                                                <  1:5239990/93‑1 (MQ=255)

                         cGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCaa                                                                <  1:7188975/93‑1 (MQ=255)

                          gCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAAt                                                               <  1:351527/93‑1 (MQ=255)

                          gCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAAt                                                               <  1:2052341/93‑1 (MQ=255)

                           ccGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAAtt                                                              <  1:5003128/93‑1 (MQ=255)

                            cGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTa                                                             <  1:5801725/93‑1 (MQ=255)

                             gTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTAt                                                            <  2:826104/93‑1 (MQ=255)

                             gTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTAt                                                            >  2:9810090/1‑93 (MQ=255)

                             gTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTAt                                                            >  1:1039036/1‑93 (MQ=255)

                              ttAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATc                                                           <  2:6159328/93‑1 (MQ=255)

                                aaTGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCAc                                                         >  2:7637506/1‑93 (MQ=255)

                                aaTGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCAc                                                         <  2:4527065/93‑1 (MQ=255)

                                aaTGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCAc                                                         <  1:4411550/93‑1 (MQ=255)

                                 aTGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCAcc                                                        <  1:6985185/93‑1 (MQ=255)

                                  tGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCg                                                       >  2:2782905/1‑93 (MQ=255)

                                  tGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTGTTCAATTCTCAccc                                                       >  2:485667/1‑92 (MQ=255)

                                     cTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCAc                                                    >  1:6192023/1‑93 (MQ=255)

                                       tttGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCt                                                  <  1:1222269/93‑1 (MQ=255)

                                       tttGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCt                                                  >  2:7339582/1‑93 (MQ=255)

                                       tttGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCt                                                  <  1:3786911/93‑1 (MQ=255)

                                            aCCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAAt                                             <  1:6297182/93‑1 (MQ=255)

                                             ccACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATa                                            <  1:9134822/93‑1 (MQ=255)

                                              cACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATAc                                           >  2:1888182/1‑93 (MQ=255)

                                              cACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATAc                                           <  2:6576072/93‑1 (MQ=255)

                                              cACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATAc                                           <  2:1545603/93‑1 (MQ=255)

                                               aCGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACg                                          >  2:4966964/1‑93 (MQ=255)

                                                  gACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGct                                       >  2:1214263/1‑93 (MQ=255)

                                                  gACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGct                                       <  1:2300780/93‑1 (MQ=255)

                                                   aCATGAACCGTGTCGTCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGctc                                      >  2:5587854/1‑93 (MQ=255)

                                                   aCATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGctc                                      >  2:1359742/1‑93 (MQ=255)

                                                   aCATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGCTTAACTCCACATGTGTTTCAATTATCCCCGCACCTCTAATACCGcac                                      >  1:7651558/1‑91 (MQ=255)

                                                    cATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGctct                                     >  1:2378982/1‑93 (MQ=255)

                                                    cATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGctct                                     >  2:8591597/1‑93 (MQ=255)

                                                    cATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGctct                                     >  2:8822003/1‑93 (MQ=255)

                                                    cATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGCTTTCAATTATCACCGCACCTGTAATACGGctcc                                     >  2:6510228/1‑92 (MQ=255)

                                                     aTGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCtctc                                    >  1:959656/1‑93 (MQ=255)

                                                     aTGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCtctc                                    <  1:7407922/93‑1 (MQ=255)

                                                     aTGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCtctc                                    <  2:2286075/93‑1 (MQ=255)

                                                      tGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCa                                   >  1:3031299/1‑93 (MQ=255)

                                                         aCCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATCCGGCTCTCACCt                                >  1:3412382/1‑93 (MQ=255)

                                                         aCCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCt                                >  1:2832572/1‑93 (MQ=255)

                                                         aCCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCAAATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCt                                >  2:8369363/1‑93 (MQ=255)

                                                          ccGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCtt                               <  2:6837838/93‑1 (MQ=255)

                                                            gtgtCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGt                             >  1:549693/1‑93 (MQ=255)

                                                            gtgtCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGt                             >  1:2255811/1‑93 (MQ=255)

                                                            gtgtCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGt                             <  2:6751977/93‑1 (MQ=255)

                                                             tgtCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTa                            >  1:8706190/1‑93 (MQ=255)

                                                             tgtCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTa                            <  1:6837088/93‑1 (MQ=255)

                                                             ggtCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTa                            <  2:8540214/92‑1 (MQ=255)

                                                                    aTCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAAc                     >  2:3499627/1‑93 (MQ=255)

                                                                    aTCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAAc                     >  1:2938861/1‑93 (MQ=255)

                                                                     tCAAAGGCTTCAACGACGGCGCGGTCGGTTTACTCCACATGGTTTTCAATTATCACCGCACCTGTAATAAGGCTCTCACCTTGTATGACAACg                    >  2:6850849/1‑93 (MQ=255)

                                                                     tCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACg                    >  2:1007794/1‑93 (MQ=255)

                                                                     tCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACg                    >  2:8715369/1‑93 (MQ=255)

                                                                         aGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCt                >  2:7751604/1‑93 (MQ=255)

                                                                          ggCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCtc               <  2:5224408/93‑1 (MQ=255)

                                                                           gCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCtcg              >  1:2435357/1‑93 (MQ=255)

                                                                           gCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCtcg              <  1:8350310/93‑1 (MQ=255)

                                                                            gttCAACGACGGCGCGTTCGGTTAACTCCACATGGTTTTAAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCtcgt             <  1:5931965/92‑1 (MQ=255)

                                                                            cTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCtcgt             <  2:475173/93‑1 (MQ=255)

                                                                              tCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCtcgtcg           >  2:2559187/1‑93 (MQ=255)

                                                                                aaCGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAg         <  2:2837643/93‑1 (MQ=255)

                                                                                    acgGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGa     >  2:9034067/1‑93 (MQ=255)

                                                                                     cgGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGaa    <  2:202197/93‑1 (MQ=255)

                                                                                      ggCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGAAt   <  2:2121238/93‑1 (MQ=255)

                                                                                       gcgcGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGAATc  <  1:4840200/93‑1 (MQ=255)

AGCGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGTGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGAATC  >  NC_000913/1497509‑1497688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCAGCGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGTGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGAATCGGTC  >  NC_000913/1497506‑1497692

GCCAGCGGCGTTCGCGTAATGCGCTCCTTGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGC                                                                                               >  SRR4302540.7818796/1‑94 (MQ=60)

GCCAGCGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGC                                                                                               <  SRR4302540.9819063/94‑1 (MQ=60)

  CAGCGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGG                                                                                             >  SRR4302540.4442715/1‑94 (MQ=60)

  CAGCGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGG                                                                                             >  SRR4302540.7785890/1‑94 (MQ=60)

   AGCGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGT                                                                                            >  SRR4302540.2908208/1‑94 (MQ=60)

     CGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCG                                                                                          <  SRR4302540.9435465/94‑1 (MQ=60)

     CGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCG                                                                                          >  SRR4302540.8886764/1‑94 (MQ=60)

     CGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCG                                                                                          >  SRR4302540.8636885/1‑94 (MQ=60)

     CGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCG                                                                                          >  SRR4302540.564695/1‑94 (MQ=60)

     CGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGAATTTTGGACCACGGACATGAACAGTGTCGCAATCAAAGGCTTCAACGACGGCGCGGACG                                                                                          >  SRR4302540.4564016/1‑94 (MQ=60)

      GGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGG                                                                                         <  SRR4302540.2233093/94‑1 (MQ=60)

      GGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGG                                                                                         <  SRR4302540.1946171/94‑1 (MQ=60)

      GGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGG                                                                                         >  SRR4302540.3801242/1‑94 (MQ=60)

       GCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGT                                                                                        >  SRR4302540.5131226/1‑94 (MQ=60)

        TGTTCGCGTAATACGCTCCTCGCCGTTAATGGCTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTT                                                                                       <  SRR4302540.1653837/94‑1 (MQ=60)

        CGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTT                                                                                       <  SRR4302540.10120709/94‑1 (MQ=60)

        CGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTT                                                                                       <  SRR4302540.7721863/94‑1 (MQ=60)

        CGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTT                                                                                       >  SRR4302540.3723878/1‑94 (MQ=60)

         cttcgcggaattcccccctccCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTA                                                                                      <  SRR4302540.3534008/73‑1 (MQ=60)

         GTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGGCGGTTA                                                                                      >  SRR4302540.3346419/1‑94 (MQ=60)

          TTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAA                                                                                     >  SRR4302540.2143009/1‑94 (MQ=60)

             GCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTC                                                                                  <  SRR4302540.2654291/94‑1 (MQ=60)

             GCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTC                                                                                  >  SRR4302540.2402213/1‑94 (MQ=60)

              CGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCC                                                                                 >  SRR4302540.7405618/1‑94 (MQ=60)

               GTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCA                                                                                >  SRR4302540.5503989/1‑94 (MQ=60)

               GTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCA                                                                                <  SRR4302540.4252671/94‑1 (MQ=60)

               GTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCA                                                                                >  SRR4302540.1215828/1‑94 (MQ=60)

                TAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCAC                                                                               <  SRR4302540.1971310/94‑1 (MQ=60)

                 AATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACA                                                                              <  SRR4302540.9223934/94‑1 (MQ=60)

                 AATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACA                                                                              >  SRR4302540.5993830/1‑94 (MQ=60)

                 AATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACA                                                                              <  SRR4302540.3693122/94‑1 (MQ=60)

                 AATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACA                                                                              >  SRR4302540.8397690/1‑94 (MQ=60)

                 AATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACA                                                                              <  SRR4302540.7856127/94‑1 (MQ=60)

                 AATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGAAATGAACCGTGTCGCCATCACAGGCTTCAACGACGGCGAGGTCGTTTAACTCCGCA                                                                              >  SRR4302540.8397691/1‑94 (MQ=60)

                  ATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACAT                                                                             >  SRR4302540.8173004/1‑94 (MQ=60)

                    GCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGG                                                                           <  SRR4302540.5885554/94‑1 (MQ=60)

                     CGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGT                                                                          >  SRR4302540.7824345/1‑94 (MQ=60)

                     CGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGT                                                                          <  SRR4302540.5107867/94‑1 (MQ=60)

                       CTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTT                                                                        >  SRR4302540.382453/1‑94 (MQ=60)

                       CTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGGTCACTCCACATGGTTT                                                                        >  SRR4302540.382454/1‑94 (MQ=60)

                        TCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTT                                                                       >  SRR4302540.1543158/1‑94 (MQ=60)

                        TCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTT                                                                       >  SRR4302540.4508572/1‑94 (MQ=60)

                        TCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGCTAACTCCACATGGTTTT                                                                       >  SRR4302540.4508573/1‑94 (MQ=60)

                        TCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGCTCGGTTAACTCCACATGGTTTT                                                                       >  SRR4302540.5345516/1‑94 (MQ=60)

                          CTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCA                                                                     >  SRR4302540.7010631/1‑94 (MQ=60)

                          CTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCA                                                                     >  SRR4302540.2813683/1‑94 (MQ=60)

                          CTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCA                                                                     <  SRR4302540.2758888/94‑1 (MQ=60)

                          CTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCA                                                                     <  SRR4302540.7157733/94‑1 (MQ=60)

                            CGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAAT                                                                   <  SRR4302540.5297152/94‑1 (MQ=60)

                            CGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAAT                                                                   <  SRR4302540.7269111/94‑1 (MQ=60)

                            CGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAAT                                                                   >  SRR4302540.6144970/1‑94 (MQ=60)

                            CGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAAT                                                                   <  SRR4302540.6580842/94‑1 (MQ=60)

                             GCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATT                                                                  <  SRR4302540.355131/94‑1 (MQ=60)

                             GCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATT                                                                  <  SRR4302540.2074438/94‑1 (MQ=60)

                              CCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTA                                                                 <  SRR4302540.5057309/94‑1 (MQ=60)

                              CCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTA                                                                 <  SRR4302540.5057306/94‑1 (MQ=60)

                               CGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTAT                                                                <  SRR4302540.5255756/94‑1 (MQ=60)

                               CGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTAT                                                                >  SRR4302540.1221536/1‑94 (MQ=60)

                               CGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTAT                                                                >  SRR4302540.1049601/1‑94 (MQ=60)

                               CGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTAT                                                                <  SRR4302540.5865831/94‑1 (MQ=60)

                                GTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATC                                                               >  SRR4302540.8648688/1‑94 (MQ=60)

                                GTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATC                                                               >  SRR4302540.8648689/1‑94 (MQ=60)

                                GTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATC                                                               >  SRR4302540.7404698/1‑94 (MQ=60)

                                   AATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACC                                                            >  SRR4302540.3932382/1‑94 (MQ=60)

                                   AATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACC                                                            <  SRR4302540.4459369/94‑1 (MQ=60)

                                    ATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCG                                                           >  SRR4302540.2392473/1‑94 (MQ=60)

                                    ATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCG                                                           <  SRR4302540.7062748/94‑1 (MQ=60)

                                    ATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCG                                                           <  SRR4302540.7042789/94‑1 (MQ=60)

                                    ATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCG                                                           <  SRR4302540.1677338/94‑1 (MQ=60)

                                    ATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCG                                                           >  SRR4302540.1243780/1‑94 (MQ=60)

                                       ACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCAC                                                        >  SRR4302540.6260964/1‑94 (MQ=60)

                                          TTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTG                                                     <  SRR4302540.3828198/94‑1 (MQ=60)

                                          TTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTG                                                     <  SRR4302540.1234774/94‑1 (MQ=60)

                                              GACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGCCGGCGCGGTCGGTTAACTacaaacggttgtccattatcacgtcacctgtagt                                                 >  SRR4302540.301137/1‑60 (MQ=60)

                                              GACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAAT                                                 >  SRR4302540.4057969/1‑94 (MQ=60)

                                              GACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAAT                                                 >  SRR4302540.300898/1‑94 (MQ=60)

                                               ACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATA                                                <  SRR4302540.6367302/94‑1 (MQ=60)

                                                CCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATAC                                               <  SRR4302540.9244600/94‑1 (MQ=60)

                                                CCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATAC                                               >  SRR4302540.4395951/1‑94 (MQ=60)

                                                 CACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACG                                              <  SRR4302540.6461841/94‑1 (MQ=60)

                                                  ACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGC                                             >  SRR4302540.8819549/1‑94 (MQ=60)

                                                   CGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGC                                            <  SRR4302540.2917000/94‑1 (MQ=60)

                                                   CGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGC                                            <  SRR4302540.205734/94‑1 (MQ=60)

                                                     GACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTC                                          >  SRR4302540.7737695/1‑94 (MQ=60)

                                                     GACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTC                                          <  SRR4302540.2325531/94‑1 (MQ=60)

                                                     GACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGCTTAACTCCACATGTGTTTCAATTATCCCCGCACCTCTAATACcgcac                                          >  SRR4302540.7737696/1‑89 (MQ=60)

                                                      ACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCT                                         <  SRR4302540.5550083/94‑1 (MQ=60)

                                                      ACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCT                                         >  SRR4302540.2404616/1‑94 (MQ=60)

                                                      ACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGATTTCAATTATCACCGCACCTGTAATACGGCTCT                                         >  SRR4302540.5581694/1‑94 (MQ=60)

                                                       CATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTC                                        >  SRR4302540.969590/1‑94 (MQ=60)

                                                        ATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCA                                       <  SRR4302540.7490444/94‑1 (MQ=60)

                                                        ATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCA                                       >  SRR4302540.3064583/1‑94 (MQ=60)

                                                           AACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATCCGGCTCTCACCT                                    >  SRR4302540.3449541/1‑94 (MQ=60)

                                                           AACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCT                                    >  SRR4302540.3783033/1‑94 (MQ=60)

                                                           AACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCT                                    >  SRR4302540.2863207/1‑94 (MQ=60)

                                                            ACCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTT                                   <  SRR4302540.9574568/94‑1 (MQ=60)

                                                             CCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTG                                  >  SRR4302540.2407372/1‑94 (MQ=60)

                                                             CCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTG                                  <  SRR4302540.8456338/94‑1 (MQ=60)

                                                             CCGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTG                                  <  SRR4302540.10070731/94‑1 (MQ=60)

                                                              CGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGT                                 >  SRR4302540.7195799/1‑94 (MQ=60)

                                                              CGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGT                                 >  SRR4302540.555679/1‑94 (MQ=60)

                                                              CGTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGT                                 >  SRR4302540.2280020/1‑94 (MQ=60)

                                                               GTGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTA                                >  SRR4302540.8807249/1‑94 (MQ=60)

                                                                TGTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTAT                               <  SRR4302540.6912814/94‑1 (MQ=60)

                                                                 GTCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATG                              >  SRR4302540.8861483/1‑94 (MQ=60)

                                                                  TCGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGA                             <  SRR4302540.2978457/94‑1 (MQ=60)

                                                                   CGCCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGAC                            <  SRR4302540.2457124/94‑1 (MQ=60)

                                                                     CCATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAA                          >  SRR4302540.8557348/1‑94 (MQ=60)

                                                                      CATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAAC                         >  SRR4302540.2971119/1‑94 (MQ=60)

                                                                      CATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAAC                         <  SRR4302540.5042928/94‑1 (MQ=60)

                                                                      CATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAAC                         >  SRR4302540.5513469/1‑94 (MQ=60)

                                                                      CATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAAC                         <  SRR4302540.5717106/94‑1 (MQ=60)

                                                                       ATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACG                        <  SRR4302540.5779066/94‑1 (MQ=60)

                                                                       ATCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACG                        <  SRR4302540.259791/94‑1 (MQ=60)

                                                                        TCAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGT                       <  SRR4302540.4808023/94‑1 (MQ=60)

                                                                         CAAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTG                      <  SRR4302540.627013/94‑1 (MQ=60)

                                                                          AAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGC                     <  SRR4302540.2282632/94‑1 (MQ=60)

                                                                          AAAGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGC                     >  SRR4302540.3488268/1‑94 (MQ=60)

                                                                           AAGGCATCAACGACAGCGCGGTCGGTCAACGCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCT                    <  SRR4302540.8200356/94‑1 (MQ=60)

                                                                            AGGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTC                   <  SRR4302540.7519572/94‑1 (MQ=60)

                                                                             GGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCG                  <  SRR4302540.9975405/94‑1 (MQ=60)

                                                                             GGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCG                  >  SRR4302540.4570440/1‑94 (MQ=60)

                                                                             GGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCG                  >  SRR4302540.4946879/1‑94 (MQ=60)

                                                                             GGCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCG                  >  SRR4302540.2461590/1‑94 (MQ=60)

                                                                              GCTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGT                 <  SRR4302540.8447224/94‑1 (MQ=60)

                                                                               GTTCAACGACGGCGCGTTCGGTTAACTCCACATGGTTTTAAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTC                <  SRR4302540.5997517/94‑1 (MQ=60)

                                                                               CTTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGAGAACGTGCTagtg                >  SRR4302540.1615800/1‑90 (MQ=60)

                                                                                TTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCG               >  SRR4302540.6972822/1‑94 (MQ=60)

                                                                                TTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCG               >  SRR4302540.7607515/1‑94 (MQ=60)

                                                                                TTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCG               >  SRR4302540.6972823/1‑94 (MQ=60)

                                                                                TTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCG               >  SRR4302540.1381006/1‑94 (MQ=60)

                                                                                TTCAACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCG               >  SRR4302540.5344771/1‑94 (MQ=60)

                                                                                   AACGACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGC            >  SRR4302540.6087976/1‑94 (MQ=60)

                                                                                      GACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGA         <  SRR4302540.1925914/94‑1 (MQ=60)

                                                                                      GACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGA         >  SRR4302540.3653236/1‑94 (MQ=60)

                                                                                      GACGGCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGA         >  SRR4302540.10122403/1‑94 (MQ=60)

                                                                                          GCGCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGAATCG     <  SRR4302540.4892046/94‑1 (MQ=60)

                                                                                           CGCGGTCGGTTAACTCCACATGTTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGAATCGG    <  SRR4302540.1043127/94‑1 (MQ=60)

                                                                                            GCGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGAATCGGT   >  SRR4302540.6386573/1‑94 (MQ=60)

                                                                                             CGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGAATCGGTC  >  SRR4302540.5148480/1‑94 (MQ=60)

                                                                                             CGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGAATCGGTC  >  SRR4302540.2037173/1‑94 (MQ=60)

GCCAGCGGCGTTCGCGTAATGCGCTCCTCGCCGTTAATGACTTTTGGACCACGGACATGAACCGTGTCGCCATCAAAGGCTTCAACGACGGCGTGGTCGGTTAACTCCACATGGTTTTCAATTATCACCGCACCTGTAATACGGCTCTCACCTTGTATGACAACGTGCTCGTCGAGCAGAATCGGTC  >  NC_000913/1497506‑1497692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`