Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,498,686	C→T	A30A (GCC→GCT)	tehA →	TehA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,498,686	0	C	T	100.0%	737.7 / NA	200	A30A (GCC→GCT)	tehA	TehA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (105/95); total (105/95)

Only 100 of 215 total aligned reads displayed.

GATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCCAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTAT  >  NC_000913/1498596‑1498775

gaTGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATgctag                                                                                         >  2:4662954/1‑93 (MQ=255)

 aTGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATgctagc                                                                                        >  1:6674639/1‑93 (MQ=255)

  tGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATgctagcc                                                                                       <  2:649799/93‑1 (MQ=255)

  tGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATgctagcc                                                                                       >  2:3438879/1‑93 (MQ=255)

  tGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATgctagcc                                                                                       >  1:4336507/1‑93 (MQ=255)

     agagCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAgg                                                                                    >  2:2577820/1‑93 (MQ=255)

     agagCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAgg                                                                                    <  1:7910096/93‑1 (MQ=255)

      gagCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGt                                                                                   >  1:5492099/1‑93 (MQ=255)

      gagCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGt                                                                                   >  2:1395324/1‑93 (MQ=255)

        gCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGttt                                                                                 >  1:5838529/1‑93 (MQ=255)

          gATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTgg                                                                               >  2:4395174/1‑93 (MQ=255)

          gATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTgg                                                                               <  1:7214648/93‑1 (MQ=255)

           aTAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGc                                                                              >  2:9482344/1‑93 (MQ=255)

            tAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCa                                                                             <  2:9645999/93‑1 (MQ=255)

            tAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCa                                                                             >  2:361821/1‑93 (MQ=255)

              aaGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCATGGCGCTATGCTAGCCAGGTTTGGCAgg                                                                           >  2:2549435/1‑93 (MQ=255)

                gTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGATGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTc                                                                         <  2:10011048/93‑1 (MQ=255)

                  gCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAg                                                                       >  1:7424072/1‑93 (MQ=255)

                     cAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCa                                                                    <  1:6546061/93‑1 (MQ=255)

                     cAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCa                                                                    <  2:7645755/93‑1 (MQ=255)

                       aTTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACt                                                                  >  1:1121637/1‑93 (MQ=255)

                          tGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGt                                                               <  1:1473113/93‑1 (MQ=255)

                            ccGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTa                                                             <  2:8227601/93‑1 (MQ=255)

                            ccGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTa                                                             <  1:3851596/93‑1 (MQ=255)

                              ggCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAgg                                                           <  2:3849110/93‑1 (MQ=255)

                               gCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAggg                                                          >  2:5571284/1‑93 (MQ=255)

                               gCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAggg                                                          <  1:1061605/93‑1 (MQ=255)

                               gCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAggg                                                          >  1:4618564/1‑93 (MQ=255)

                               gCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAggg                                                          >  1:2996995/1‑93 (MQ=255)

                               gCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAggg                                                          >  1:3810122/1‑93 (MQ=255)

                                cAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAgggg                                                         >  1:2030536/1‑93 (MQ=255)

                                  ggCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAt                                                       <  2:5460033/93‑1 (MQ=255)

                                  ggCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAt                                                       >  2:5895040/1‑93 (MQ=255)

                                   gCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATg                                                      >  1:950845/1‑93 (MQ=255)

                                     tACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGGTggg                                                    >  1:2316955/1‑93 (MQ=255)

                                     tACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATggg                                                    >  2:516741/1‑93 (MQ=255)

                                      aCTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTAAGCCACTGGTTAGGGGATCGGc                                                   >  2:5814628/1‑93 (MQ=255)

                                       cTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCt                                                  >  2:1796379/1‑93 (MQ=255)

                                       cTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCt                                                  <  1:9343762/93‑1 (MQ=255)

                                        tttGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTg                                                 >  2:3238382/1‑93 (MQ=255)

                                         ttGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTgg                                                >  2:7903173/1‑93 (MQ=255)

                                         ttGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTgg                                                <  1:8358655/93‑1 (MQ=255)

                                          tGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTggg                                               >  2:2180788/1‑92 (MQ=255)

                                          tGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGt                                               <  1:2683598/93‑1 (MQ=255)

                                          tGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGt                                               <  1:1675396/93‑1 (MQ=255)

                                           ggTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTgggg                                              >  2:8526167/1‑91 (MQ=255)

                                            gTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTgg                                             >  2:2290805/1‑92 (MQ=255)

                                            gTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGa                                             <  2:2217694/93‑1 (MQ=255)

                                               ttGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTc                                          <  1:3362255/93‑1 (MQ=255)

                                                  tgtTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTgg                                       >  2:6330153/1‑93 (MQ=255)

                                                     tGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCga                                    <  1:345095/93‑1 (MQ=255)

                                                       gggACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCgatg                                  >  1:1510109/1‑93 (MQ=255)

                                                       gggACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCgatg                                  <  2:7549492/93‑1 (MQ=255)

                                                       gggACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCgatg                                  >  2:8712073/1‑93 (MQ=255)

                                                         gACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCgatgat                                >  1:7704962/1‑93 (MQ=255)

                                                         gACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCgatgat                                <  2:604038/93‑1 (MQ=255)

                                                         gACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCgatgat                                <  1:1637708/93‑1 (MQ=255)

                                                          aCGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatc                               <  2:9037023/93‑1 (MQ=255)

                                                             aTAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatcatc                            <  2:6343783/93‑1 (MQ=255)

                                                             aTAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatcatc                            >  1:1919537/1‑93 (MQ=255)

                                                             aTAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatcatc                            >  1:6094388/1‑93 (MQ=255)

                                                             aTAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatcatc                            >  2:7018652/1‑93 (MQ=255)

                                                             aTAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatcatc                            >  1:6523770/1‑93 (MQ=255)

                                                              tAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCt                           >  2:8297507/1‑93 (MQ=255)

                                                               aGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTg                          >  1:2862260/1‑93 (MQ=255)

                                                                gggatgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTgg                         <  2:7175538/93‑1 (MQ=255)

                                                                gggatgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTgg                         <  1:4546516/93‑1 (MQ=255)

                                                                gggatgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTgg                         >  2:6414536/1‑93 (MQ=255)

                                                                gggatgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTgg                         >  1:5556849/1‑93 (MQ=255)

                                                                gggatgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTgg                         <  1:8968804/93‑1 (MQ=255)

                                                                 ggatgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTggg                        <  1:6850755/93‑1 (MQ=255)

                                                                 ggatgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTggg                        >  1:983294/1‑93 (MQ=255)

                                                                  gatgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTgggg                       <  2:6862253/93‑1 (MQ=255)

                                                                   atgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGa                      >  2:7734114/1‑93 (MQ=255)

                                                                   atgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGa                      >  2:7956712/1‑93 (MQ=255)

                                                                   atgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGa                      <  2:1940716/93‑1 (MQ=255)

                                                                   atgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGa                      >  1:9141465/1‑93 (MQ=255)

                                                                      ggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGatta                   <  2:3702905/93‑1 (MQ=255)

                                                                        atTTGCCTGGCGCTATGCTAGCCAGGTTTGGCGGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGattatt                 >  1:6317934/1‑93 (MQ=255)

                                                                        atTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGgttatt                 >  1:5410042/1‑93 (MQ=255)

                                                                        atTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGattatt                 <  2:8972194/93‑1 (MQ=255)

                                                                         tttGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTg                >  2:4482842/1‑93 (MQ=255)

                                                                         tttGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTg                >  2:2411367/1‑93 (MQ=255)

                                                                         tttGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTg                >  1:8940729/1‑93 (MQ=255)

                                                                         tttGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTg                >  1:8724700/1‑93 (MQ=255)

                                                                           tGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGAc              <  1:8707234/93‑1 (MQ=255)

                                                                             ccTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTa            <  1:9961142/93‑1 (MQ=255)

                                                                              cTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAg           <  2:9871897/93‑1 (MQ=255)

                                                                              cTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAg           >  2:3294257/1‑93 (MQ=255)

                                                                              cTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAg           >  1:7493536/1‑93 (MQ=255)

                                                                              cTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAg           >  1:4881678/1‑93 (MQ=255)

                                                                                ggCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCCTCTGGGGATTATTGACTAgcg         >  1:4452459/1‑93 (MQ=255)

                                                                                ggCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAgcg         >  2:7334868/1‑93 (MQ=255)

                                                                                ggCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAgcg         >  2:3208465/1‑93 (MQ=255)

                                                                                 gcgcTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAgcgc        <  1:6308747/93‑1 (MQ=255)

                                                                                  cgcTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCa       <  1:6252917/93‑1 (MQ=255)

                                                                                     tATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCAttt    >  1:5283574/1‑93 (MQ=255)

                                                                                       tGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTAt  <  2:5450561/93‑1 (MQ=255)

                                                                                       tGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTAt  >  2:8422699/1‑93 (MQ=255)

                                                                                       tGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTAt  >  1:8560252/1‑93 (MQ=255)

GATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCCAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTAT  >  NC_000913/1498596‑1498775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAAGATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCCAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTATTG  >  NC_000913/1498593‑1498777

GAAGATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCT                                                                                             <  SRR4302540.7472535/94‑1 (MQ=60)

 AAGATGCAGAGCGATAAAGTGCTCAGTTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTA                                                                                            <  SRR4302540.9917127/94‑1 (MQ=60)

   GATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGC                                                                                          >  SRR4302540.6748380/1‑94 (MQ=60)

    ATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCC                                                                                         >  SRR4302540.4383715/1‑94 (MQ=60)

    ATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCC                                                                                         >  SRR4302540.9612485/1‑94 (MQ=60)

     TGCAGAGCGATAAAGTGCTCAATGTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCA                                                                                        <  SRR4302540.3084943/94‑1 (MQ=60)

      GCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAG                                                                                       >  SRR4302540.8925056/1‑94 (MQ=60)

        AGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGT                                                                                     >  SRR4302540.2038508/1‑94 (MQ=60)

        AGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGT                                                                                     <  SRR4302540.8002331/94‑1 (MQ=60)

        AGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGT                                                                                     >  SRR4302540.5552570/1‑94 (MQ=60)

        AGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGT                                                                                     >  SRR4302540.1656551/1‑94 (MQ=60)

          AGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTT                                                                                   >  SRR4302540.6876384/1‑94 (MQ=60)

          AGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTT                                                                                   >  SRR4302540.903942/1‑94 (MQ=60)

          AGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTT                                                                                   <  SRR4302540.8536675/94‑1 (MQ=60)

          AGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTT                                                                                   >  SRR4302540.5903092/1‑94 (MQ=60)

          AGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTT                                                                                   <  SRR4302540.6703129/94‑1 (MQ=60)

          AGCGATAAAGTGCTCAATTTGCCGGCAGGCTACCTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTT                                                                                   <  SRR4302540.2351579/94‑1 (MQ=60)

            CGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGG                                                                                 >  SRR4302540.8285812/1‑94 (MQ=60)

            CGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGG                                                                                 <  SRR4302540.3804769/94‑1 (MQ=60)

            CGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTACTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGG                                                                                 <  SRR4302540.9081983/94‑1 (MQ=60)

             GATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGC                                                                                <  SRR4302540.7295068/94‑1 (MQ=60)

             GATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGC                                                                                >  SRR4302540.9253258/1‑94 (MQ=60)

              ATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCA                                                                               <  SRR4302540.2963518/94‑1 (MQ=60)

               TAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAG                                                                              <  SRR4302540.4932839/94‑1 (MQ=60)

                   GTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCA                                                                          <  SRR4302540.8646634/94‑1 (MQ=60)

                   GTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCA                                                                          >  SRR4302540.101011/1‑94 (MQ=60)

                    TGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAG                                                                         >  SRR4302540.7506770/1‑94 (MQ=60)

                      CTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCC                                                                       >  SRR4302540.1501917/1‑94 (MQ=60)

                      CTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCC                                                                       <  SRR4302540.1746103/94‑1 (MQ=60)

                      CTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCC                                                                       >  SRR4302540.4452394/1‑94 (MQ=60)

                        CAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCAC                                                                     <  SRR4302540.6618684/94‑1 (MQ=60)

                        CAATGTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCAC                                                                     <  SRR4302540.9726093/94‑1 (MQ=60)

                         AATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACT                                                                    >  SRR4302540.1133286/1‑94 (MQ=60)

                         AATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCACGTTTGGCAGGTCAGCCACT                                                                    <  SRR4302540.5500753/94‑1 (MQ=60)

                          ATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTG                                                                   <  SRR4302540.3791806/94‑1 (MQ=60)

                          ATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTG                                                                   >  SRR4302540.8814419/1‑94 (MQ=60)

                            TTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGT                                                                 <  SRR4302540.2146034/94‑1 (MQ=60)

                            TTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGT                                                                 <  SRR4302540.9610268/94‑1 (MQ=60)

                             TGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTT                                                                <  SRR4302540.1489217/94‑1 (MQ=60)

                               CCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAG                                                              >  SRR4302540.629643/1‑94 (MQ=60)

                               CCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAG                                                              <  SRR4302540.3893473/94‑1 (MQ=60)

                               CCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAG                                                              >  SRR4302540.6226726/1‑94 (MQ=60)

                                 GGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGG                                                            >  SRR4302540.4668085/1‑94 (MQ=60)

                                 GGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGG                                                            >  SRR4302540.3030024/1‑94 (MQ=60)

                                 GGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGG                                                            >  SRR4302540.3851617/1‑94 (MQ=60)

                                  GCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGG                                                           >  SRR4302540.2052453/1‑94 (MQ=60)

                                  GCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGG                                                           <  SRR4302540.1072414/94‑1 (MQ=60)

                                   CAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGA                                                          >  SRR4302540.591109/1‑94 (MQ=60)

                                    AGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAT                                                         >  SRR4302540.7744685/1‑94 (MQ=60)

                                    AGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAG                                                         >  SRR4302540.4513913/1‑94 (MQ=60)

                                    AGGCTACTTTGGTATTGTGCTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAT                                                         <  SRR4302540.8784220/94‑1 (MQ=60)

                                     GGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATG                                                        >  SRR4302540.5811610/1‑94 (MQ=60)

                                     GGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATG                                                        >  SRR4302540.960728/1‑94 (MQ=60)

                                       CTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGGTGGG                                                      >  SRR4302540.2341899/1‑94 (MQ=60)

                                          CTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTG                                                   <  SRR4302540.9455084/94‑1 (MQ=60)

                                           TTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGG                                                  <  SRR4302540.2042110/94‑1 (MQ=60)

                                            TTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGT                                                 <  SRR4302540.8455653/94‑1 (MQ=60)

                                             TGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTG                                                <  SRR4302540.1693596/94‑1 (MQ=60)

                                             TGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTG                                                <  SRR4302540.2712616/94‑1 (MQ=60)

                                              GGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGA                                               <  SRR4302540.4719270/94‑1 (MQ=60)

                                                TATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATT                                             >  SRR4302540.6581428/1‑94 (MQ=60)

                                                 ATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTC                                            <  SRR4302540.6943412/94‑1 (MQ=60)

                                                  TTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCGGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCT                                           <  SRR4302540.7453625/94‑1 (MQ=60)

                                                  TTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCT                                           >  SRR4302540.1129214/1‑94 (MQ=60)

                                                  TTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCT                                           <  SRR4302540.3399054/94‑1 (MQ=60)

                                                   TGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTG                                          <  SRR4302540.6605076/94‑1 (MQ=60)

                                                    GTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGG                                         <  SRR4302540.3884871/94‑1 (MQ=60)

                                                    GTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGG                                         >  SRR4302540.2714149/1‑94 (MQ=60)

                                                        TGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGAT                                     <  SRR4302540.348601/94‑1 (MQ=60)

                                                         GGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATG                                    >  SRR4302540.1526793/1‑94 (MQ=60)

                                                           GGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGAT                                  >  SRR4302540.7793203/1‑94 (MQ=60)

                                                            GACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATC                                 <  SRR4302540.1655614/94‑1 (MQ=60)

                                                            GACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATC                                 <  SRR4302540.1655613/94‑1 (MQ=60)

                                                               GATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATC                              >  SRR4302540.6596227/1‑94 (MQ=60)

                                                               GATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATC                              >  SRR4302540.6162219/1‑94 (MQ=60)

                                                               GATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATC                              >  SRR4302540.1940480/1‑94 (MQ=60)

                                                                ATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGACAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCT                             >  SRR4302540.6970336/1‑94 (MQ=60)

                                                                 TAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTG                            >  SRR4302540.2893294/1‑94 (MQ=60)

                                                                  AGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGG                           >  SRR4302540.5618054/1‑94 (MQ=60)

                                                                   GGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGG                          >  SRR4302540.993358/1‑94 (MQ=60)

                                                                   GGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGG                          <  SRR4302540.4595706/94‑1 (MQ=60)

                                                                   GGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGG                          <  SRR4302540.9075202/94‑1 (MQ=60)

                                                                   GGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGG                          >  SRR4302540.7888046/1‑94 (MQ=60)

                                                                    GGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGG                         <  SRR4302540.6926648/94‑1 (MQ=60)

                                                                     GATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGA                        >  SRR4302540.9251288/1‑94 (MQ=60)

                                                                         GGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTAT                    <  SRR4302540.4616388/94‑1 (MQ=60)

                                                                          GATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCGGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATT                   >  SRR4302540.6388288/1‑94 (MQ=60)

                                                                          GATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCGGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATT                   >  SRR4302540.6388287/1‑94 (MQ=60)

                                                                          GATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGGTTATT                   >  SRR4302540.5469527/1‑94 (MQ=60)

                                                                           ATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTG                  >  SRR4302540.9045649/1‑94 (MQ=60)

                                                                           ATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTG                  >  SRR4302540.8826011/1‑94 (MQ=60)

                                                                              TGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACT               <  SRR4302540.8808302/94‑1 (MQ=60)

                                                                                CCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAG             <  SRR4302540.5440158/94‑1 (MQ=60)

                                                                                CCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAG             <  SRR4302540.1396468/94‑1 (MQ=60)

                                                                                CCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAG             <  SRR4302540.10077376/94‑1 (MQ=60)

                                                                                CCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAG             >  SRR4302540.4934101/1‑94 (MQ=60)

                                                                                CCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAG             <  SRR4302540.435360/94‑1 (MQ=60)

                                                                                CCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAG             >  SRR4302540.7577223/1‑94 (MQ=60)

                                                                                  TGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCCTCTGGGGATTATTGACTAGCG           >  SRR4302540.4500723/1‑94 (MQ=60)

                                                                                   GGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGC          <  SRR4302540.5569096/94‑1 (MQ=60)

                                                                                    GCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCA         <  SRR4302540.6378998/94‑1 (MQ=60)

                                                                                    GCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCA         <  SRR4302540.5086640/94‑1 (MQ=60)

                                                                                     CGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGGTGGGCTGGTGATTCTGGCGATGATCATCTGGGGGTTATTGGCTATCGCAT        >  SRR4302540.7520137/1‑94 (MQ=60)

                                                                                     CGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCAT        <  SRR4302540.6322490/94‑1 (MQ=60)

                                                                                     CGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCAT        <  SRR4302540.6322491/94‑1 (MQ=60)

                                                                                       CTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTT      >  SRR4302540.5341309/1‑94 (MQ=60)

                                                                                        TATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTA     >  SRR4302540.998843/1‑94 (MQ=60)

                                                                                         ATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTAT    <  SRR4302540.3440684/94‑1 (MQ=60)

                                                                                         ATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTAT    >  SRR4302540.8659674/1‑94 (MQ=60)

                                                                                          TGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTATT   >  SRR4302540.4075546/1‑94 (MQ=60)

                                                                                          TGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTATT   >  SRR4302540.5126090/1‑94 (MQ=60)

                                                                                           GCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTATTG  >  SRR4302540.6156131/1‑94 (MQ=60)

                                                                                           GCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTATTG  <  SRR4302540.3746873/94‑1 (MQ=60)

                                                                                           GCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTATTG  <  SRR4302540.1427548/94‑1 (MQ=60)

GAAGATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCCAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTATTG  >  NC_000913/1498593‑1498777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`