Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,498,686	C→T	A30A (GCC→GCT)	tehA →	TehA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,498,686	0	C	T	99.4%	622.8 / NA	169	A30A (GCC→GCT)	tehA	TehA
Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (94/74); minor base A (0/1); total (94/75)
Fisher's exact test for biased strand distribution p-value = 4.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 181 total aligned reads displayed.

ATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCCAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTAT  >  NC_000913/1498597‑1498775

aTGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATgctagc                                                                                        >  2:4502672/1‑93 (MQ=255)

  gCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATgctagcca                                                                                      <  2:987962/93‑1 (MQ=255)

  gCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATgctagcca                                                                                      >  1:744849/1‑93 (MQ=255)

   cAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGctagccag                                                                                     >  2:5634335/1‑93 (MQ=255)

    agagCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAgg                                                                                    <  2:2248962/93‑1 (MQ=255)

    agagCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAgg                                                                                    <  2:2434460/93‑1 (MQ=255)

    agagCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAgg                                                                                    >  2:5574878/1‑93 (MQ=255)

     gagCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGt                                                                                   <  1:4401182/93‑1 (MQ=255)

     gagCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGCATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTATCCAGGt                                                                                   >  1:263783/1‑93 (MQ=255)

       gCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGttt                                                                                 <  2:3526366/93‑1 (MQ=255)

        cGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTg                                                                                >  2:5648517/1‑93 (MQ=255)

          aTAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGc                                                                              >  2:6269113/1‑93 (MQ=255)

          aTAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGc                                                                              >  1:3343914/1‑93 (MQ=255)

             aaGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCCGGTTTGGCAgg                                                                           >  2:1140302/1‑93 (MQ=255)

              aGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGt                                                                          >  1:5524049/1‑93 (MQ=255)

               gTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTc                                                                         >  2:6144349/1‑93 (MQ=255)

               gTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTc                                                                         <  1:4258874/93‑1 (MQ=255)

                 gCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAg                                                                       <  2:5061268/93‑1 (MQ=255)

                   tCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGcc                                                                     <  2:4442497/93‑1 (MQ=255)

                     aaTTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCAc                                                                   >  2:3170184/1‑93 (MQ=255)

                      aTTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACt                                                                  <  1:1597465/93‑1 (MQ=255)

                         tGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGt                                                               >  2:5159343/1‑93 (MQ=255)

                            cGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAg                                                            >  1:4314427/1‑93 (MQ=255)

                             ggCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAgg                                                           <  1:5954437/93‑1 (MQ=255)

                             ggCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAgg                                                           >  2:408540/1‑93 (MQ=255)

                             ggCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAgg                                                           <  2:4905884/93‑1 (MQ=255)

                              gCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAggg                                                          >  2:3087023/1‑93 (MQ=255)

                              gCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAggg                                                          <  2:5809201/93‑1 (MQ=255)

                              gCAGGCTACTTTGGTATTGTGTCGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAggg                                                          <  1:5076813/93‑1 (MQ=255)

                                aGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGCTTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAggggg                                                        >  1:1823188/1‑92 (MQ=255)

                                 ggCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAt                                                       >  1:4778278/1‑93 (MQ=255)

                                 ggCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAt                                                       <  2:1989628/93‑1 (MQ=255)

                                 ggCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAt                                                       >  1:3880388/1‑93 (MQ=255)

                                 ggCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAt                                                       >  1:3655144/1‑93 (MQ=255)

                                 ggCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAt                                                       <  1:3489890/93‑1 (MQ=255)

                                  gCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATg                                                      <  2:1058472/93‑1 (MQ=255)

                                   cTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAttg                                                     >  2:1891518/1‑91 (MQ=255)

                                   cTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATgg                                                     >  2:5186483/1‑93 (MQ=255)

                                    tACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATggg                                                    <  1:4373317/93‑1 (MQ=255)

                                     aCTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGc                                                   <  2:4324019/93‑1 (MQ=255)

                                     aCTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGc                                                   <  2:2044239/93‑1 (MQ=255)

                                     aCTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGc                                                   >  1:5816656/1‑93 (MQ=255)

                                      cTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCt                                                  >  1:2122211/1‑93 (MQ=255)

                                      cTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGAAGGTCAGCCACTGGTTAGGGGATGGGCt                                                  >  1:6059559/1‑93 (MQ=255)

                                      cTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCAAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCt                                                  <  2:1644284/93‑1 (MQ=255)

                                       tttGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTg                                                 >  2:3442389/1‑93 (MQ=255)

                                         tGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGt                                               <  2:2893460/93‑1 (MQ=255)

                                         tGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGt                                               <  2:382999/93‑1 (MQ=255)

                                          ggTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTg                                              >  1:1045413/1‑93 (MQ=255)

                                             aTTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGAtt                                           >  2:2563887/1‑93 (MQ=255)

                                              ttGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTc                                          <  2:2613729/93‑1 (MQ=255)

                                              ttGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTc                                          >  2:2933200/1‑93 (MQ=255)

                                              ttGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTc                                          <  2:6051640/93‑1 (MQ=255)

                                              ttGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTc                                          >  2:4224224/1‑93 (MQ=255)

                                               tgtgTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGACACTGGTTAGGGGATGGGCTGGTGATTCt                                         >  1:2307273/1‑93 (MQ=255)

                                                gtgtTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGGTGGAGATTCTg                                        >  1:3362975/1‑93 (MQ=255)

                                                 tgtTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTgg                                       >  2:1781438/1‑93 (MQ=255)

                                                 tgtTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTgg                                       >  1:5434865/1‑93 (MQ=255)

                                                  gtTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGc                                      <  1:5702880/93‑1 (MQ=255)

                                                  gtTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGc                                      >  1:5543457/1‑93 (MQ=255)

                                                    tGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCga                                    <  1:2537891/93‑1 (MQ=255)

                                                     ggggACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCgat                                   >  2:4958513/1‑93 (MQ=255)

                                                      gggACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCgatg                                  <  1:5901351/93‑1 (MQ=255)

                                                         gcGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatc                               <  1:4113756/92‑1 (MQ=255)

                                                          cGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatca                              <  1:5227465/93‑1 (MQ=255)

                                                           gATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatcat                             >  1:4408693/1‑93 (MQ=255)

                                                            aTAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatcatc                            <  1:105874/93‑1 (MQ=255)

                                                            aTAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatcatc                            <  1:4086555/93‑1 (MQ=255)

                                                            aTAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGatcatc                            >  1:2494673/1‑93 (MQ=255)

                                                              aGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTg                          <  1:1121074/93‑1 (MQ=255)

                                                                ggatgggatgTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTggg                        <  1:673270/93‑1 (MQ=255)

                                                                ggatgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTggg                        <  2:123084/93‑1 (MQ=255)

                                                                 gatgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTgggg                       >  1:5452646/1‑93 (MQ=255)

                                                                 gatgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTgggg                       <  1:3971589/93‑1 (MQ=255)

                                                                  atgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGa                      >  2:1033402/1‑93 (MQ=255)

                                                                  atgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGa                      >  1:5053366/1‑93 (MQ=255)

                                                                  atgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGa                      <  2:3940876/93‑1 (MQ=255)

                                                                   tgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGat                     <  1:5859605/93‑1 (MQ=255)

                                                                   tgggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGat                     >  2:945603/1‑93 (MQ=255)

                                                                    gggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGatt                    >  2:4390569/1‑93 (MQ=255)

                                                                    gggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGatt                    >  2:1175369/1‑93 (MQ=255)

                                                                    gggatTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGatt                    >  1:2485974/1‑93 (MQ=255)

                                                                       atTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGattatt                 >  1:4973405/1‑93 (MQ=255)

                                                                        tttGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTg                >  2:6219139/1‑93 (MQ=255)

                                                                         ttGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGa               <  1:5602268/93‑1 (MQ=255)

                                                                         ttGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGa               <  2:2687291/93‑1 (MQ=255)

                                                                           tccTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACt             <  1:2563437/92‑1 (MQ=255)

                                                                            ccTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTa            <  2:3029933/93‑1 (MQ=255)

                                                                             cTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAg           >  2:64388/1‑93 (MQ=255)

                                                                              tGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAgc          >  2:5383397/1‑93 (MQ=255)

                                                                              tGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAgc          <  2:4512039/93‑1 (MQ=255)

                                                                                gcgcTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGAGTAgcgc        >  2:1466555/1‑93 (MQ=255)

                                                                                gcgcTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAgcgc        <  1:2828570/93‑1 (MQ=255)

                                                                                  gcTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGTTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCAt      >  1:450707/1‑93 (MQ=255)

                                                                                   cTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCTCAtt     <  1:3178916/93‑1 (MQ=255)

                                                                                   cTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCAtt     >  1:1745200/1‑93 (MQ=255)

                                                                                    tATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCAttt    >  1:5340655/1‑93 (MQ=255)

                                                                                     aTGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTa   <  1:5327234/93‑1 (MQ=255)

                                                                                     aTGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTa   >  2:4368409/1‑93 (MQ=255)

                                                                                     aTGCGAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTa   <  2:854754/93‑1 (MQ=255)

ATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCCAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTAT  >  NC_000913/1498597‑1498775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAAGATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCCAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTATTGCC  >  NC_000913/1498593‑1498779

GAAGATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCT                                                                                               <  SRR4302533.6041114/94‑1 (MQ=60)

 AAGATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTA                                                                                              >  SRR4302533.3650852/1‑94 (MQ=60)

   GATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGC                                                                                            >  SRR4302533.1818753/1‑94 (MQ=60)

     TGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCA                                                                                          >  SRR4302533.749233/1‑94 (MQ=60)

       CAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGG                                                                                        >  SRR4302533.5436977/1‑94 (MQ=60)

        AGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGT                                                                                       >  SRR4302533.1120500/1‑94 (MQ=60)

        AGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGT                                                                                       >  SRR4302533.3942086/1‑94 (MQ=60)

        AGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGT                                                                                       >  SRR4302533.4149055/1‑94 (MQ=60)

        AGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGCATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTATCCAGGT                                                                                       >  SRR4302533.265383/1‑94 (MQ=60)

         GAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTT                                                                                      <  SRR4302533.4427755/94‑1 (MQ=60)

             GATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGC                                                                                  >  SRR4302533.5335659/1‑94 (MQ=60)

             GATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGC                                                                                  >  SRR4302533.3364576/1‑94 (MQ=60)

               TAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAG                                                                                <  SRR4302533.5565332/94‑1 (MQ=60)

                AAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGG                                                                               >  SRR4302533.5372063/1‑94 (MQ=60)

                 AAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGT                                                                              >  SRR4302533.5557400/1‑94 (MQ=60)

                  AGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTC                                                                             >  SRR4302533.4363163/1‑94 (MQ=60)

                   GTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCA                                                                            <  SRR4302533.4284543/94‑1 (MQ=60)

                     GCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGC                                                                          >  SRR4302533.3652092/1‑94 (MQ=60)

                          ATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTG                                                                     <  SRR4302533.1607138/94‑1 (MQ=60)

                           TTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGG                                                                    <  SRR4302533.4437925/94‑1 (MQ=60)

                             TGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTT                                                                  <  SRR4302533.5611674/94‑1 (MQ=60)

                             TGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTT                                                                  >  SRR4302533.5971511/1‑94 (MQ=60)

                               CCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAG                                                                <  SRR4302533.1005339/94‑1 (MQ=60)

                               CCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAG                                                                >  SRR4302533.4340403/1‑94 (MQ=60)

                                 GGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGG                                                              >  SRR4302533.2632958/1‑94 (MQ=60)

                                 GGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGG                                                              <  SRR4302533.5990454/94‑1 (MQ=60)

                                  GCAGGCTACTTTGGTATTGTGTCGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGG                                                             <  SRR4302533.5107499/94‑1 (MQ=60)

                                   CGGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGA                                                            >  SRR4302533.4094594/1‑94 (MQ=60)

                                   CAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGCTTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGG                                                            >  SRR4302533.1834327/1‑94 (MQ=60)

                                    AGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAT                                                           <  SRR4302533.5765669/94‑1 (MQ=60)

                                    AGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAT                                                           >  SRR4302533.4807221/1‑94 (MQ=60)

                                    AGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAT                                                           >  SRR4302533.3904064/1‑94 (MQ=60)

                                    AGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGAT                                                           >  SRR4302533.3677615/1‑94 (MQ=60)

                                    AGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGGTTGGCAGGTCAGCCACTGGTTAGGGGAT                                                           >  SRR4302533.5650017/1‑94 (MQ=60)

                                     GGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATG                                                          <  SRR4302533.3511412/94‑1 (MQ=60)

                                     GGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATG                                                          <  SRR4302533.5922347/94‑1 (MQ=60)

                                     GGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATG                                                          <  SRR4302533.2250614/94‑1 (MQ=60)

                                      GCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGG                                                         <  SRR4302533.4686042/94‑1 (MQ=60)

                                       CTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGG                                                        <  SRR4302533.4902519/94‑1 (MQ=60)

                                        TACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGC                                                       <  SRR4302533.4399716/94‑1 (MQ=60)

                                        TACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGC                                                       >  SRR4302533.5851787/1‑94 (MQ=60)

                                        TACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGC                                                       >  SRR4302533.5156962/1‑94 (MQ=60)

                                         ACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCT                                                      >  SRR4302533.2135293/1‑94 (MQ=60)

                                         ACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGAAGGTCAGCCACTGGTTAGGGGATGGGCT                                                      >  SRR4302533.6096241/1‑94 (MQ=60)

                                           TTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGG                                                    >  SRR4302533.3495352/1‑94 (MQ=60)

                                             TGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTG                                                  >  SRR4302533.1051557/1‑94 (MQ=60)

                                                  TTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGACACTGGTTAGGGGATGGGCTGGTGATTCT                                             >  SRR4302533.2321567/1‑94 (MQ=60)

                                                   TGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGGTGGAGATTCTG                                            >  SRR4302533.3383754/1‑94 (MQ=60)

                                                    GTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGG                                           >  SRR4302533.5467595/1‑94 (MQ=60)

                                                     TGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGC                                          >  SRR4302533.5576938/1‑94 (MQ=60)

                                                      GTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCG                                         <  SRR4302533.5737327/94‑1 (MQ=60)

                                                        TGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGAT                                       <  SRR4302533.2553516/94‑1 (MQ=60)

                                                          GGGACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGA                                     <  SRR4302533.5936990/94‑1 (MQ=60)

                                                            GACGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGACAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGCTGATC                                   >  SRR4302533.3311433/1‑94 (MQ=60)

                                                             GCGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCA                                  <  SRR4302533.4138756/94‑1 (MQ=60)

                                                              CGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCAT                                 <  SRR4302533.6096135/94‑1 (MQ=60)

                                                              CGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCAT                                 <  SRR4302533.5258917/94‑1 (MQ=60)

                                                              CGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCAT                                 >  SRR4302533.5083601/1‑94 (MQ=60)

                                                              CGATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCAT                                 >  SRR4302533.4435317/1‑94 (MQ=60)

                                                               GATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATC                                >  SRR4302533.4418685/1‑94 (MQ=60)

                                                               GATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATC                                >  SRR4302533.2510063/1‑94 (MQ=60)

                                                                ATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCT                               <  SRR4302533.4111434/94‑1 (MQ=60)

                                                                ATAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCT                               <  SRR4302533.106533/94‑1 (MQ=60)

                                                                 TAGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTG                              <  SRR4302533.2549788/94‑1 (MQ=60)

                                                                  AGGGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGG                             <  SRR4302533.1127725/94‑1 (MQ=60)

                                                                    GGATGGGATTTGGCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGG                           <  SRR4302533.6256644/94‑1 (MQ=60)

                                                                    GGATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGG                           >  SRR4302533.5485490/1‑94 (MQ=60)

                                                                    GGATGGGATGTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGG                           <  SRR4302533.677245/94‑1 (MQ=60)

                                                                     GATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGA                          >  SRR4302533.5083918/1‑94 (MQ=60)

                                                                     GATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGA                          <  SRR4302533.3995778/94‑1 (MQ=60)

                                                                     GATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGA                          <  SRR4302533.2503188/94‑1 (MQ=60)

                                                                      ATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGGT                         >  SRR4302533.5552811/1‑94 (MQ=60)

                                                                      ATGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGAT                         <  SRR4302533.1639268/94‑1 (MQ=60)

                                                                       TGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATT                        >  SRR4302533.2501292/1‑94 (MQ=60)

                                                                       TGGGATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATT                        <  SRR4302533.5895028/94‑1 (MQ=60)

                                                                          GATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATT                     >  SRR4302533.5003561/1‑94 (MQ=60)

                                                                           ATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTG                    >  SRR4302533.4308090/1‑94 (MQ=60)

                                                                           ATTTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTG                    >  SRR4302533.2738179/1‑94 (MQ=60)

                                                                             TTGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGAC                  <  SRR4302533.5636120/94‑1 (MQ=60)

                                                                              TGCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACT                 >  SRR4302533.242324/1‑94 (MQ=60)

                                                                               TCCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTA                <  SRR4302533.2579216/94‑1 (MQ=60)

                                                                                CCTGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAG               >  SRR4302533.3880464/1‑94 (MQ=60)

                                                                                  TGGCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCG             <  SRR4302533.3152532/94‑1 (MQ=60)

                                                                                    GCGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCA           <  SRR4302533.2845972/94‑1 (MQ=60)

                                                                                     CGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGTTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCAT          >  SRR4302533.453406/1‑94 (MQ=60)

                                                                                     CGCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCAT          >  SRR4302533.1197141/1‑94 (MQ=60)

                                                                                      GCTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATT         >  SRR4302533.1755816/1‑94 (MQ=60)

                                                                                       CTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCTCATTT        <  SRR4302533.3198469/94‑1 (MQ=60)

                                                                                       CTATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTT        >  SRR4302533.5372682/1‑94 (MQ=60)

                                                                                         ATGCTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTAT      <  SRR4302533.5359159/94‑1 (MQ=60)

                                                                                            CTAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTATTGC   >  SRR4302533.1519809/1‑94 (MQ=60)

                                                                                             TAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTATTGCC  >  SRR4302533.5609640/1‑94 (MQ=60)

GAAGATGCAGAGCGATAAAGTGCTCAATTTGCCGGCAGGCTACTTTGGTATTGTGTTGGGGACGATAGGGATGGGATTTGCCTGGCGCTATGCCAGCCAGGTTTGGCAGGTCAGCCACTGGTTAGGGGATGGGCTGGTGATTCTGGCGATGATCATCTGGGGATTATTGACTAGCGCATTTATTGCC  >  NC_000913/1498593‑1498779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`