Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,507,420 T→C T18A (ACG→GCG)  b1437 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,507,4200TC99.7% 1038.0 / ‑5.1 326T18A (ACG→GCG) b1437hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (135/190);  total (136/190)
Fisher's exact test for biased strand distribution p-value = 4.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01

Only 100 of 343 total aligned reads displayed.

ACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGA  >  NC_000913/1507330‑1507509
                                                                                          |                                                                                         
  gTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCAcc                                                                                       >  2:648635/1‑93 (MQ=255)
    tGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCAcccc                                                                                     <  2:6110383/93‑1 (MQ=255)
       cTCGAATCTCGGGGCGTCGCTGTAGCGAATGACAGCAACCATATGAAACTCAGATTTCATGGGAGGCGCAGTGTCATGCAGCGCCACCCCTGc                                                                                  <  2:8955730/93‑1 (MQ=255)
         cGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGa                                                                                <  2:3383944/93‑1 (MQ=255)
         cGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGa                                                                                <  1:7286283/93‑1 (MQ=255)
         cGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGa                                                                                >  1:1677462/1‑93 (MQ=255)
         cGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGa                                                                                >  1:6223424/1‑93 (MQ=255)
         cGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGa                                                                                >  1:7193586/1‑93 (MQ=255)
         cGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGa                                                                                <  1:982163/93‑1 (MQ=255)
           aaTCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATg                                                                              <  1:7844343/93‑1 (MQ=255)
           aaTCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATg                                                                              >  2:457930/1‑93 (MQ=255)
             tctcAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATgag                                                                            <  1:1895846/93‑1 (MQ=255)
             tctcAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATgag                                                                            <  2:4482123/93‑1 (MQ=255)
             tctcAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATgag                                                                            >  1:5383913/1‑93 (MQ=255)
              ctcAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATgaga                                                                           >  2:1863237/1‑93 (MQ=255)
              ctcAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATgaga                                                                           <  2:1927340/93‑1 (MQ=255)
                cAGGGCGTCGATGTAGAGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTAATGCCGCGCCACCCCTGCGATGAGAtt                                                                         <  2:8821508/93‑1 (MQ=255)
                  gggCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTaa                                                                       >  2:1370953/1‑93 (MQ=255)
                         gATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCa                                                                <  2:1509337/93‑1 (MQ=255)
                         gATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCa                                                                >  2:9569784/1‑93 (MQ=255)
                         gATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCa                                                                <  1:5672759/93‑1 (MQ=255)
                            gTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTg                                                             <  1:1080008/93‑1 (MQ=255)
                            gTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTg                                                             <  2:4867275/93‑1 (MQ=255)
                             tAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGc                                                            >  1:5055905/1‑93 (MQ=255)
                             tAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGc                                                            >  2:5922906/1‑93 (MQ=255)
                             tAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGc                                                            >  1:6518796/1‑93 (MQ=255)
                                cGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTa                                                         <  1:9547933/93‑1 (MQ=255)
                                cGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTa                                                         >  2:4216698/1‑93 (MQ=255)
                                  aaTGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTaaa                                                       >  2:5725220/1‑93 (MQ=255)
                                  aaTGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTaaa                                                       >  2:8685354/1‑93 (MQ=255)
                                  aaTGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCAACCCCTGCGATGAGATTAAAGAACCATTGCGTaaa                                                       <  2:4065550/93‑1 (MQ=255)
                                   aTGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAg                                                      <  1:3372282/93‑1 (MQ=255)
                                   aTGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAg                                                      >  2:9137524/1‑93 (MQ=255)
                                    tGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGc                                                     <  1:5936661/93‑1 (MQ=255)
                                    tGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGc                                                     <  2:2862622/93‑1 (MQ=255)
                                      gcagcaACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCaa                                                   <  2:4886604/93‑1 (MQ=255)
                                        agcaACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATc                                                 <  1:4917597/93‑1 (MQ=255)
                                        agcaACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATc                                                 <  2:8012198/93‑1 (MQ=255)
                                        agcaACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATc                                                 >  1:46147/1‑93 (MQ=255)
                                         gcaACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATcc                                                >  1:9197478/1‑93 (MQ=255)
                                         gcaACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATcc                                                <  1:3851956/93‑1 (MQ=255)
                                            aCCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGa                                             >  1:7343069/1‑93 (MQ=255)
                                            aCCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAACAACCATTGCGTAAAGCAATCCTGa                                             <  2:7701720/93‑1 (MQ=255)
                                             ccATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGaa                                            >  1:4868349/1‑93 (MQ=255)
                                             ccATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGaa                                            <  1:4533107/93‑1 (MQ=255)
                                               aTTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAaac                                          <  2:8063827/93‑1 (MQ=255)
                                                  tGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAaacaac                                       >  1:8032902/1‑93 (MQ=255)
                                                  tGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAaacaac                                       <  1:9042062/93‑1 (MQ=255)
                                                   gAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACt                                      <  2:7034470/93‑1 (MQ=255)
                                                   gAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACt                                      <  2:6134729/93‑1 (MQ=255)
                                                   gAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACt                                      <  2:552550/93‑1 (MQ=255)
                                                    aaaCTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTc                                     <  2:8511806/93‑1 (MQ=255)
                                                      aCTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCgg                                   <  2:3791924/93‑1 (MQ=255)
                                                       cTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGt                                  <  1:2569803/93‑1 (MQ=255)
                                                       cTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGt                                  >  2:10009307/1‑93 (MQ=255)
                                                            gTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAg                             <  1:4123421/93‑1 (MQ=255)
                                                            gTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAg                             <  1:1498163/93‑1 (MQ=255)
                                                             tttCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGt                            <  1:7453830/93‑1 (MQ=255)
                                                             tttCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGt                            >  1:7892132/1‑93 (MQ=255)
                                                              ttCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGtt                           <  1:5850897/93‑1 (MQ=255)
                                                               tCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTa                          >  1:2237385/1‑93 (MQ=255)
                                                               tCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTa                          >  1:7728123/1‑93 (MQ=255)
                                                               tCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTa                          <  1:1397177/93‑1 (MQ=255)
                                                               tCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTa                          >  1:6314952/1‑93 (MQ=255)
                                                                taTGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTaa                         <  1:2033361/92‑1 (MQ=255)
                                                                cATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTaa                         >  1:298544/1‑93 (MQ=255)
                                                                 aTGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAAt                        >  2:5027752/1‑93 (MQ=255)
                                                                  tGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATc                       >  1:8522215/1‑93 (MQ=255)
                                                                     gAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGcc                    <  2:5612250/93‑1 (MQ=255)
                                                                     gAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGcc                    <  2:7213571/93‑1 (MQ=255)
                                                                       ggCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCaa                  >  2:705703/1‑93 (MQ=255)
                                                                       ggCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCaa                  <  2:5448557/93‑1 (MQ=255)
                                                                       ggCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCaa                  >  1:6097435/1‑93 (MQ=255)
                                                                       ggCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCaa                  <  2:6598543/93‑1 (MQ=255)
                                                                       ggCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCaa                  <  1:8222773/93‑1 (MQ=255)
                                                                        gcgcAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAAt                 <  2:217165/93‑1 (MQ=255)
                                                                         tgcAGTGTCATGCGGCGCCTCCCCTGCGATGAGATTAAAGAGCCATTGCTTAAAACAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAAtt                <  2:7573936/92‑1 (MQ=255)
                                                                         ggcAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAAtt                <  1:7149436/92‑1 (MQ=255)
                                                                         cgcAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAAtt                <  1:5566498/93‑1 (MQ=255)
                                                                         cgcAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAAtt                <  1:400575/93‑1 (MQ=255)
                                                                          gcAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTa               >  1:2741969/1‑93 (MQ=255)
                                                                           cAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTaa              >  1:1038714/1‑93 (MQ=255)
                                                                             gtgtCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTcaaa            >  1:3321958/1‑93 (MQ=255)
                                                                             gtgtCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTaaaa            <  1:6586542/93‑1 (MQ=255)
                                                                             gtgtCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTaaaa            <  1:6945337/93‑1 (MQ=255)
                                                                              tgtCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGACACAACTCGGTTTGAGTTAATCGCCAATTaaaaa           >  1:9684819/1‑93 (MQ=255)
                                                                              tgtCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTaaaaa           >  2:2609278/1‑93 (MQ=255)
                                                                              tgtCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTaaaaa           <  1:3667603/93‑1 (MQ=255)
                                                                              tgtCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTaaaaa           >  2:3546869/1‑93 (MQ=255)
                                                                                tCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAgg         >  1:3082460/1‑93 (MQ=255)
                                                                                 cATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGt        <  2:9470297/93‑1 (MQ=255)
                                                                                  aTGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGtt       <  1:8377017/93‑1 (MQ=255)
                                                                                   tGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTa      >  1:8881729/1‑93 (MQ=255)
                                                                                   tGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTa      <  1:5794218/93‑1 (MQ=255)
                                                                                    gCCGCGCCACCCCTGCGATGAGATTAAAGACCCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTaa     <  1:4341429/93‑1 (MQ=255)
                                                                                    gCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTaa     <  2:2427525/93‑1 (MQ=255)
                                                                                     ccGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAAt    <  1:9920240/93‑1 (MQ=255)
                                                                                      cgcgCCACCCCTGCGATGGGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTTATCGCCAATTAAAAAGGTTAATg   <  2:9692496/93‑1 (MQ=255)
                                                                                       gcgcCACCCCTGCGATGAGATTAAATAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGa  <  2:8225080/93‑1 (MQ=255)
                                                                                       gcgcCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGa  <  2:3044783/93‑1 (MQ=255)
                                                                                          |                                                                                         
ACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGA  >  NC_000913/1507330‑1507509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGACATG  >  NC_000913/1507327‑1507513
                                                                                             |                                                                                             
CAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGCAACTCAGGTTTCATGGGAGGCGCAGCGTCATGCCGCGC                                                                                               >  SRR4302540.2106193/1‑94 (MQ=60)
CAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGC                                                                                               <  SRR4302540.9259373/94‑1 (MQ=60)
CAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGC                                                                                               >  SRR4302540.3571457/1‑94 (MQ=60)
 AGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCC                                                                                              >  SRR4302540.9827060/1‑94 (MQ=60)
  GACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCA                                                                                             >  SRR4302540.2187072/1‑94 (MQ=60)
     GTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCC                                                                                          >  SRR4302540.7398665/1‑94 (MQ=60)
     GTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCC                                                                                          >  SRR4302540.1778519/1‑94 (MQ=60)
       TGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCT                                                                                        >  SRR4302540.10111275/1‑94 (MQ=60)
       TGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCT                                                                                        <  SRR4302540.6891032/94‑1 (MQ=60)
       TGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCT                                                                                        <  SRR4302540.8802471/94‑1 (MQ=60)
        GGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTG                                                                                       >  SRR4302540.4323650/1‑94 (MQ=60)
         GCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGC                                                                                      <  SRR4302540.8965253/94‑1 (MQ=60)
           TCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGA                                                                                    >  SRR4302540.6292648/1‑94 (MQ=60)
           TCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGA                                                                                    >  SRR4302540.1695679/1‑94 (MQ=60)
           TCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGA                                                                                    >  SRR4302540.6292647/1‑94 (MQ=60)
           TCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGA                                                                                    >  SRR4302540.7273771/1‑94 (MQ=60)
            CGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGAT                                                                                   <  SRR4302540.992219/94‑1 (MQ=60)
            CGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGAT                                                                                   >  SRR4302540.9944479/1‑94 (MQ=60)
            CGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGAT                                                                                   <  SRR4302540.9150109/94‑1 (MQ=60)
            CGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGAT                                                                                   <  SRR4302540.7367586/94‑1 (MQ=60)
              AATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGA                                                                                 <  SRR4302540.7935999/94‑1 (MQ=60)
               ATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAG                                                                                >  SRR4302540.5443134/1‑94 (MQ=60)
               ATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAG                                                                                <  SRR4302540.509506/94‑1 (MQ=60)
               ATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAG                                                                                >  SRR4302540.477597/1‑94 (MQ=60)
                TCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGA                                                                               <  SRR4302540.1916591/94‑1 (MQ=60)
                TCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGA                                                                               <  SRR4302540.3407259/94‑1 (MQ=60)
                TCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGA                                                                               <  SRR4302540.1432986/94‑1 (MQ=60)
                TCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGA                                                                               <  SRR4302540.8608829/94‑1 (MQ=60)
                 CTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGAT                                                                              <  SRR4302540.6635299/94‑1 (MQ=60)
                  TCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATT                                                                             >  SRR4302540.6936666/1‑94 (MQ=60)
                   CAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTA                                                                            <  SRR4302540.448669/94‑1 (MQ=60)
                    AGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATTAGATTAA                                                                           <  SRR4302540.5927660/94‑1 (MQ=60)
                    AGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAA                                                                           <  SRR4302540.5870547/94‑1 (MQ=60)
                     GGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAA                                                                          <  SRR4302540.3386699/94‑1 (MQ=60)
                      GGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAG                                                                         >  SRR4302540.796717/1‑94 (MQ=60)
                        CGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGCTTAAAGAA                                                                       >  SRR4302540.141504/1‑94 (MQ=60)
                        CGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAA                                                                       <  SRR4302540.7327391/94‑1 (MQ=60)
                          TCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACC                                                                     <  SRR4302540.8052301/94‑1 (MQ=60)
                           CGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCA                                                                    >  SRR4302540.4747397/1‑94 (MQ=60)
                           CGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCA                                                                    >  SRR4302540.6516226/1‑94 (MQ=60)
                           CGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCA                                                                    <  SRR4302540.10065972/94‑1 (MQ=60)
                            GATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCAT                                                                   <  SRR4302540.5735222/94‑1 (MQ=60)
                             ATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGTCGCGCCACCCCTGCGATGAGATTAAAGAACCATT                                                                  <  SRR4302540.7509647/94‑1 (MQ=60)
                             ATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATT                                                                  >  SRR4302540.8097880/1‑94 (MQ=60)
                             ATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATT                                                                  <  SRR4302540.6278555/94‑1 (MQ=60)
                              TGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTG                                                                 <  SRR4302540.5860804/94‑1 (MQ=60)
                              TGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTG                                                                 <  SRR4302540.4369064/94‑1 (MQ=60)
                              TGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTG                                                                 <  SRR4302540.6745136/94‑1 (MQ=60)
                               GTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGC                                                                <  SRR4302540.1091060/94‑1 (MQ=60)
                               GTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGC                                                                >  SRR4302540.6591203/1‑94 (MQ=60)
                               GTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGC                                                                >  SRR4302540.5110564/1‑94 (MQ=60)
                               GTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGC                                                                >  SRR4302540.5673225/1‑94 (MQ=60)
                               GTAGCGAATGGCAGCAACCATGGGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGC                                                                <  SRR4302540.1091059/94‑1 (MQ=60)
                                TAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCG                                                               >  SRR4302540.443538/1‑94 (MQ=60)
                                TAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCG                                                               <  SRR4302540.1390018/94‑1 (MQ=60)
                                 AGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGT                                                              <  SRR4302540.5684428/94‑1 (MQ=60)
                                  GCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTA                                                             <  SRR4302540.7239840/94‑1 (MQ=60)
                                   CGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAA                                                            >  SRR4302540.6220866/1‑94 (MQ=60)
                                   CGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAA                                                            <  SRR4302540.9660885/94‑1 (MQ=60)
                                    GAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAA                                                           >  SRR4302540.3322332/1‑94 (MQ=60)
                                      ATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGC                                                         <  SRR4302540.9662202/94‑1 (MQ=60)
                                      ATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGC                                                         <  SRR4302540.3409141/94‑1 (MQ=60)
                                      ATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGC                                                         <  SRR4302540.7707295/94‑1 (MQ=60)
                                       TGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCA                                                        <  SRR4302540.9016205/94‑1 (MQ=60)
                                       TGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCA                                                        >  SRR4302540.3717717/1‑94 (MQ=60)
                                       TGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCA                                                        <  SRR4302540.6002288/94‑1 (MQ=60)
                                         GCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAAT                                                      >  SRR4302540.4085558/1‑94 (MQ=60)
                                         GCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAAT                                                      <  SRR4302540.5027647/94‑1 (MQ=60)
                                         GCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAAT                                                      >  SRR4302540.9925231/1‑94 (MQ=60)
                                          CAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATC                                                     <  SRR4302540.2042920/94‑1 (MQ=60)
                                          CAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATC                                                     <  SRR4302540.3941152/94‑1 (MQ=60)
                                          CAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATC                                                     >  SRR4302540.46617/1‑94 (MQ=60)
                                           AGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCC                                                    >  SRR4302540.9307806/1‑94 (MQ=60)
                                           AGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCC                                                    <  SRR4302540.4970559/94‑1 (MQ=60)
                                            GCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCT                                                   <  SRR4302540.3893835/94‑1 (MQ=60)
                                            GCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCT                                                   <  SRR4302540.3633502/94‑1 (MQ=60)
                                            GCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCT                                                   <  SRR4302540.8182583/94‑1 (MQ=60)
                                            ACAACCAGTTGAATCTCAGGTTTCATGCGAGGCGCAGTGTCATGCCGCGCCGCCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCT                                                   <  SRR4302540.3509381/94‑1 (MQ=60)
                                             CAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTG                                                  <  SRR4302540.8284185/94‑1 (MQ=60)
                                              AACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGA                                                 >  SRR4302540.7425000/1‑94 (MQ=60)
                                              AACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGA                                                 >  SRR4302540.2924172/1‑94 (MQ=60)
                                               ACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAA                                                >  SRR4302540.4920562/1‑94 (MQ=60)
                                                CCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAA                                               <  SRR4302540.4582170/94‑1 (MQ=60)
                                                CCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAA                                               >  SRR4302540.3748076/1‑94 (MQ=60)
                                                 CATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC                                              <  SRR4302540.9284979/94‑1 (MQ=60)
                                                 CATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC                                              >  SRR4302540.8413929/1‑94 (MQ=60)
                                                  ATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACA                                             >  SRR4302540.5860313/1‑94 (MQ=60)
                                                    TTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAAC                                           >  SRR4302540.7401923/1‑94 (MQ=60)
                                                    TTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAAC                                           >  SRR4302540.8126288/1‑94 (MQ=60)
                                                    TTGAAACTCAGGTTTCATGGGAGCCGCAGTGTCATGCCGCGCCACCACTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAAC                                           <  SRR4302540.6598842/94‑1 (MQ=60)
                                                     TGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACT                                          <  SRR4302540.7853211/94‑1 (MQ=60)
                                                     TGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACT                                          >  SRR4302540.6269031/1‑94 (MQ=60)
                                                     TGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACT                                          <  SRR4302540.9150602/94‑1 (MQ=60)
                                                     TGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACT                                          <  SRR4302540.7069446/94‑1 (MQ=60)
                                                      GAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTC                                         <  SRR4302540.4947338/94‑1 (MQ=60)
                                                       AAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCG                                        <  SRR4302540.2138267/94‑1 (MQ=60)
                                                        AACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGG                                       <  SRR4302540.9981070/94‑1 (MQ=60)
                                                        AACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGG                                       >  SRR4302540.5966876/1‑94 (MQ=60)
                                                        AACTCAGGTTTCATGGGAGGCGCAGTGGCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGG                                       >  SRR4302540.5594640/1‑94 (MQ=60)
                                                          CTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTT                                     >  SRR4302540.9685025/1‑94 (MQ=60)
                                                          CTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTT                                     <  SRR4302540.2597513/94‑1 (MQ=60)
                                                          CTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTT                                     <  SRR4302540.1796959/94‑1 (MQ=60)
                                                          CTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTT                                     <  SRR4302540.2597512/94‑1 (MQ=60)
                                                          CTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTT                                     >  SRR4302540.9763162/1‑94 (MQ=60)
                                                           TCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTT                                    <  SRR4302540.7643299/94‑1 (MQ=60)
                                                           TCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTT                                    >  SRR4302540.7443213/1‑94 (MQ=60)
                                                           TCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTT                                    <  SRR4302540.4093744/94‑1 (MQ=60)
                                                           TCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTT                                    <  SRR4302540.5111021/94‑1 (MQ=60)
                                                           TCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTT                                    <  SRR4302540.4093745/94‑1 (MQ=60)
                                                           TCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTT                                    <  SRR4302540.5111020/94‑1 (MQ=60)
                                                           TCAGGGTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTT                                    <  SRR4302540.8231535/94‑1 (MQ=60)
                                                            CAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTG                                   <  SRR4302540.1156065/94‑1 (MQ=60)
                                                            CAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTG                                   <  SRR4302540.3985254/94‑1 (MQ=60)
                                                             AGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGA                                  <  SRR4302540.6094855/94‑1 (MQ=60)
                                                             AGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGA                                  >  SRR4302540.6423780/1‑94 (MQ=60)
                                                             AGGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGA                                  <  SRR4302540.7939776/94‑1 (MQ=60)
                                                              GGTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAG                                 <  SRR4302540.7879625/94‑1 (MQ=60)
                                                              GGTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAG                                 >  SRR4302540.6537372/1‑94 (MQ=60)
                                                               GTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGT                                <  SRR4302540.1514656/94‑1 (MQ=60)
                                                               GTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGT                                <  SRR4302540.3054483/94‑1 (MQ=60)
                                                               GTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGT                                <  SRR4302540.5742375/94‑1 (MQ=60)
                                                               GTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGT                                <  SRR4302540.1514655/94‑1 (MQ=60)
                                                               GTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGT                                >  SRR4302540.7984233/1‑94 (MQ=60)
                                                               GTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGT                                <  SRR4302540.1514657/94‑1 (MQ=60)
                                                               GTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGT                                <  SRR4302540.4167951/94‑1 (MQ=60)
                                                               GTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGT                                >  SRR4302540.2517900/1‑94 (MQ=60)
                                                               GTTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGT                                >  SRR4302540.2374825/1‑94 (MQ=60)
                                                                TTTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTT                               <  SRR4302540.7536930/94‑1 (MQ=60)
                                                                 TTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTA                              <  SRR4302540.5915604/94‑1 (MQ=60)
                                                                 TTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTA                              >  SRR4302540.1995895/1‑94 (MQ=60)
                                                                 TTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTA                              >  SRR4302540.6385275/1‑94 (MQ=60)
                                                                 TTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTA                              >  SRR4302540.2261447/1‑94 (MQ=60)
                                                                 TTCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTA                              >  SRR4302540.7818334/1‑94 (MQ=60)
                                                                  TCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAA                             >  SRR4302540.301497/1‑94 (MQ=60)
                                                                  TCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAA                             <  SRR4302540.1412172/94‑1 (MQ=60)
                                                                  TCATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAA                             <  SRR4302540.9887018/94‑1 (MQ=60)
                                                                   TATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAAT                            <  SRR4302540.2055293/94‑1 (MQ=60)
                                                                   CATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAAT                            >  SRR4302540.9212760/1‑94 (MQ=60)
                                                                    ATGGGAGGCGCAGTGTCATGCCGCGCCACCCGTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATC                           <  SRR4302540.1867651/94‑1 (MQ=60)
                                                                    ATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGGAACAACTCGGTTTGAGTTAATC                           >  SRR4302540.3000859/1‑94 (MQ=60)
                                                                    ATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATC                           >  SRR4302540.8621249/1‑94 (MQ=60)
                                                                    ATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATC                           >  SRR4302540.8618160/1‑94 (MQ=60)
                                                                    ATGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATC                           >  SRR4302540.8618159/1‑94 (MQ=60)
                                                                    ATGGGAGGCGCAGTGTCATGCCGCGCCACCCCGGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATC                           <  SRR4302540.1440280/94‑1 (MQ=60)
                                                                     TGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCG                          <  SRR4302540.465936/94‑1 (MQ=60)
                                                                     TGGGAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCG                          >  SRR4302540.7501132/1‑94 (MQ=60)
                                                                        gagcaGCAGTGTCATGTCGCGCCCCCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCA                       <  SRR4302540.6595604/89‑1 (MQ=60)
                                                                        GAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCA                       <  SRR4302540.7352606/94‑1 (MQ=60)
                                                                        GAGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCA                       >  SRR4302540.4681582/1‑94 (MQ=60)
                                                                         AGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAA                      >  SRR4302540.4944840/1‑94 (MQ=60)
                                                                         AGGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAA                      >  SRR4302540.6165310/1‑94 (MQ=60)
                                                                          GGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAATCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAAT                     <  SRR4302540.9396508/94‑1 (MQ=60)
                                                                          GGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAAT                     <  SRR4302540.3234492/94‑1 (MQ=60)
                                                                          GGCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAAT                     <  SRR4302540.8318361/94‑1 (MQ=60)
                                                                           GCGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATT                    <  SRR4302540.5632193/94‑1 (MQ=60)
                                                                            GGCAGTGTCATGCCGCGCCCCCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTA                   <  SRR4302540.3591878/94‑1 (MQ=60)
                                                                            GGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTA                   <  SRR4302540.7229110/94‑1 (MQ=60)
                                                                            CGCAGTGTCATGCCGCGCCCCCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTA                   <  SRR4302540.7229111/94‑1 (MQ=60)
                                                                            CGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTA                   <  SRR4302540.6064021/94‑1 (MQ=60)
                                                                            CGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTA                   <  SRR4302540.5627795/94‑1 (MQ=60)
                                                                            CGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTA                   >  SRR4302540.2771575/1‑94 (MQ=60)
                                                                            CGCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTA                   <  SRR4302540.404749/94‑1 (MQ=60)
                                                                             GCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAA                  >  SRR4302540.1049276/1‑94 (MQ=60)
                                                                             GCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAA                  <  SRR4302540.6361775/94‑1 (MQ=60)
                                                                             GCAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAA                  >  SRR4302540.1049277/1‑94 (MQ=60)
                                                                              CAGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAA                 >  SRR4302540.7220288/1‑94 (MQ=60)
                                                                               AGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTCAAA                >  SRR4302540.3358400/1‑94 (MQ=60)
                                                                               AGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAA                >  SRR4302540.5754187/1‑94 (MQ=60)
                                                                               AGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAA                >  SRR4302540.3050971/1‑94 (MQ=60)
                                                                               AGTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAA                >  SRR4302540.2729443/1‑94 (MQ=60)
                                                                                GTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGACACAACTCGGTTTGAGTTAATCGCCAATTAAAAA               >  SRR4302540.9798759/1‑94 (MQ=60)
                                                                                GTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAA               <  SRR4302540.6659499/94‑1 (MQ=60)
                                                                                GTGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAA               <  SRR4302540.7022637/94‑1 (MQ=60)
                                                                                 TGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAG              >  SRR4302540.9968741/1‑94 (MQ=60)
                                                                                 TGTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAG              <  SRR4302540.3707726/94‑1 (MQ=60)
                                                                                  GTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGG             >  SRR4302540.3116285/1‑94 (MQ=60)
                                                                                  GTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGG             >  SRR4302540.9355006/1‑94 (MQ=60)
                                                                                  GTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGG             >  SRR4302540.7867285/1‑94 (MQ=60)
                                                                                  GTCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGG             <  SRR4302540.5147445/94‑1 (MQ=60)
                                                                                   TCATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGT            <  SRR4302540.8363168/94‑1 (MQ=60)
                                                                                    CATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTT           <  SRR4302540.4621278/94‑1 (MQ=60)
                                                                                     ATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTA          >  SRR4302540.8984519/1‑94 (MQ=60)
                                                                                     ATGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTA          <  SRR4302540.8474223/94‑1 (MQ=60)
                                                                                      TGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAA         <  SRR4302540.324360/94‑1 (MQ=60)
                                                                                      TGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAA         <  SRR4302540.5480674/94‑1 (MQ=60)
                                                                                      TGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAA         <  SRR4302540.5858245/94‑1 (MQ=60)
                                                                                      TGCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAA         <  SRR4302540.4444040/94‑1 (MQ=60)
                                                                                       GCCGCGCCACCCCTGCGATGAGATTAAAGACCCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAAT        <  SRR4302540.4388692/94‑1 (MQ=60)
                                                                                       GCCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAAT        <  SRR4302540.2821162/94‑1 (MQ=60)
                                                                                        CCGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATG       <  SRR4302540.10036085/94‑1 (MQ=60)
                                                                                         CGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGA      <  SRR4302540.7351398/94‑1 (MQ=60)
                                                                                         CGCGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGA      <  SRR4302540.2169364/94‑1 (MQ=60)
                                                                                           CGCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGACA    <  SRR4302540.8289028/94‑1 (MQ=60)
                                                                                            GCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGACAT   >  SRR4302540.7688744/1‑94 (MQ=60)
                                                                                            GCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGACAT   >  SRR4302540.5293522/1‑94 (MQ=60)
                                                                                            GCCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGACAT   <  SRR4302540.6019099/94‑1 (MQ=60)
                                                                                             CCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGACATG  >  SRR4302540.8197721/1‑94 (MQ=60)
                                                                                             CCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGACATG  <  SRR4302540.587770/94‑1 (MQ=60)
                                                                                             |                                                                                             
CAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAGGTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAACAACTCGGTTTGAGTTAATCGCCAATTAAAAAGGTTAATGACATG  >  NC_000913/1507327‑1507513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑