Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,562,936 |
(C)5→6 |
coding (846/2424 nt) |
b1489 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,562,931 | 1 | . | C | 84.2%
| 675.1
/ 124.6
| 247 | coding (851/2424 nt) | b1489 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (19/20); new base C (104/104); total (123/124) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.23e-01 |
Only 100 of 284 total aligned reads displayed.
ATGACGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAACATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑CCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCG > NC_000913/1562839‑1563021
|
tGACGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑c < 1:1014557/93‑1 (MQ=255)
tGACGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑c > 1:2135513/1‑93 (MQ=255)
gACGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑cc > 2:8403748/1‑93 (MQ=255)
aCGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑ccc > 2:7487621/1‑93 (MQ=255)
cGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑cccc < 1:4623576/93‑1 (MQ=255)
gCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑ccccc > 1:6543177/1‑93 (MQ=255)
cccAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑cccccc > 2:10035154/1‑92 (MQ=255)
cccAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑cccccc > 1:3194848/1‑92 (MQ=255)
ccAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑cccccca > 2:4828225/1‑91 (MQ=255)
cAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑ccccccat < 1:9160885/93‑4 (MQ=255)
cAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑ccccccat < 1:5683124/93‑4 (MQ=255)
aGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑ccccccatt < 1:7897806/93‑5 (MQ=255)
tgtATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTc < 1:7148571/93‑1 (MQ=255)
tgtATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTc > 1:6311351/1‑93 (MQ=255)
tATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCAt < 2:9378649/93‑1 (MQ=255)
tATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCAt > 2:3058563/1‑93 (MQ=255)
tATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCAt < 2:3792601/93‑1 (MQ=255)
aTCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATg > 1:6177865/1‑93 (MQ=255)
aTCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑CCCCCATTTCATGa > 2:512184/1‑93 (MQ=255)
tCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGa > 2:1292925/1‑93 (MQ=255)
cGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGCTGTTACGACAACTGATTTCCCCCCACTTCATGaa > 1:6455963/1‑93 (MQ=255)
ggCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGaaa < 1:2517639/93‑1 (MQ=255)
ggCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGaaa < 1:7077503/93‑1 (MQ=255)
gCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAAt > 2:3175329/1‑93 (MQ=255)
tCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGc > 2:1229284/1‑93 (MQ=255)
tCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGc > 2:6400504/1‑93 (MQ=255)
tCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGc > 2:5863297/1‑93 (MQ=255)
tCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑CCCCCATTTCATGAAATGGCg < 2:3477613/93‑1 (MQ=255)
tCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑CCCCCATTTCATGAAATGGCg > 1:8347628/1‑93 (MQ=255)
cccGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCg < 1:643124/93‑1 (MQ=255)
ccGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCgg > 2:7796300/1‑93 (MQ=255)
cGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCggg < 2:252583/93‑1 (MQ=255)
gTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGgc < 1:9280585/93‑1 (MQ=255)
ttGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGgct < 1:1394734/93‑1 (MQ=255)
tGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGgctg < 2:9580308/93‑1 (MQ=255)
gTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGcac > 1:5497934/1‑93 (MQ=255)
tGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAACTGGCGGGCTGCTGccca > 2:2606729/1‑93 (MQ=255)
tGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGGTGCTGcaca > 2:2337077/1‑93 (MQ=255)
tGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGcaca > 1:9339607/1‑93 (MQ=255)
tGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑CCCCCATTTCATGAAATGGCGGGCTGCTGCACAt < 1:5116833/93‑1 (MQ=255)
gCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACAt < 1:8627655/93‑1 (MQ=255)
gAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATgg > 2:2244908/1‑93 (MQ=255)
gAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATgg < 1:4098715/93‑1 (MQ=255)
gAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATgg < 1:2432333/93‑1 (MQ=255)
aaCAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑CCCCCATTTCATGAAATGGCGGGCTGCTGCACATggcg < 1:3560812/93‑1 (MQ=255)
cAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATggcgg < 1:8793043/93‑1 (MQ=255)
aGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATggcggc < 1:4338863/93‑1 (MQ=255)
gCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACACGgcggcg > 1:6908565/1‑93 (MQ=255)
gCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑CCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCga < 2:5957030/93‑1 (MQ=255)
gCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑CCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCga < 2:615441/93‑1 (MQ=255)
cGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCga < 1:9886204/93‑1 (MQ=255)
gAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCgag > 1:5051574/1‑93 (MQ=255)
agcATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCgagca > 2:115451/3‑91 (MQ=255)
agcATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGaa > 1:1276327/3‑93 (MQ=255)
gcATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAat > 2:3016845/2‑93 (MQ=255)
cATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAata < 1:7446729/93‑1 (MQ=255)
cATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑CCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAatat < 1:6789137/93‑1 (MQ=255)
cATCCGATGCGTAGAGTACAGATCCGATGTTACGACAAAGGATTTCCCCCCTTTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAata < 1:1095270/93‑1 (MQ=255)
tGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGGCGCTTCACATAGGGGCGAGAAGAtt > 2:7179198/1‑93 (MQ=255)
gCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTg < 2:4282202/93‑1 (MQ=255)
cGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGGataattc > 1:9645450/1‑89 (MQ=255)
tCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTc < 2:1599728/93‑1 (MQ=255)
tCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTc > 1:7782342/1‑93 (MQ=255)
tCGTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTc < 1:2753880/93‑1 (MQ=255)
gTTGAGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGGCAATATTGGCTTcca > 1:4887296/1‑91 (MQ=255)
aGTACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTg < 2:8759357/93‑1 (MQ=255)
tACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGc < 1:7741235/93‑1 (MQ=255)
tACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGc < 1:7512119/93‑1 (MQ=255)
tACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGc < 1:3890702/93‑1 (MQ=255)
tACAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGc > 2:5596651/1‑93 (MQ=255)
aCAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCg < 2:8120514/93‑1 (MQ=255)
cAGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGa < 2:6095399/93‑1 (MQ=255)
aGATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGaa > 2:6993691/1‑93 (MQ=255)
gATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAAt < 1:6234494/93‑1 (MQ=255)
gATTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGATGGCGAAt > 2:4068192/1‑93 (MQ=255)
aTTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATc < 1:2898186/93‑1 (MQ=255)
aTTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATc < 2:9714420/93‑1 (MQ=255)
aTTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATc < 2:1729988/93‑1 (MQ=255)
aTTCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCAAATc > 1:1649429/1‑93 (MQ=255)
ttCGATGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCt > 1:5277733/1‑93 (MQ=255)
tGTTACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATTGCGGCGAGGATATTGCCTTCAAGCTAGCCAAACTGTCGt > 1:8251252/1‑93 (MQ=255)
ttACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGttc < 1:4916246/93‑1 (MQ=255)
tACGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGttct < 2:4724979/93‑1 (MQ=255)
aCGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGttctt > 2:398950/1‑93 (MQ=255)
aCGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGttctt < 1:3085714/93‑1 (MQ=255)
aCGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGttctt < 2:9025786/93‑1 (MQ=255)
cGACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGttcttc < 2:4389637/93‑1 (MQ=255)
aggcAAATGATTT‑TCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCg < 1:1483560/90‑1 (MQ=255)
gACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCg > 1:4713914/1‑93 (MQ=255)
gACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCg < 2:7077792/93‑1 (MQ=255)
gACAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCg < 1:7292957/93‑1 (MQ=255)
aCAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCgg > 2:5743956/1‑93 (MQ=255)
cAAATGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGt > 1:3703263/1‑93 (MQ=255)
cAAATGATTT‑CCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTg > 2:7317816/1‑93 (MQ=255)
aaaTGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTg > 2:7536899/1‑93 (MQ=255)
aaTGATTTCCCCCCATTTCATGAAATGGTGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGa < 2:7605446/93‑1 (MQ=255)
aaTGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGa < 1:5359914/93‑1 (MQ=255)
aTGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGat < 1:2054043/93‑1 (MQ=255)
aTGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGat < 2:2865772/93‑1 (MQ=255)
tGATTTCCCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGata < 2:1481775/93‑1 (MQ=255)
|
ATGACGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAACATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATTT‑CCCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCG > NC_000913/1562839‑1563021
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAACATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAAAGTC > NC_000913/1562843‑1563029
|
CGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCC < SRR4302540.4673125/94‑1 (MQ=60)
CGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCC < SRR4302540.27552/94‑1 (MQ=60)
CGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCC > SRR4302540.6615782/1‑94 (MQ=60)
CGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCC > SRR4302540.6615783/1‑94 (MQ=60)
GCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCC > SRR4302540.3229546/1‑94 (MQ=60)
GCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCC > SRR4302540.7026961/1‑94 (MQ=60)
CCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGATTACGGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCcat > SRR4302540.4693869/1‑91 (MQ=60)
CCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCcat < SRR4302540.5184238/94‑4 (MQ=60)
CCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCAAT > SRR4302540.4693870/1‑94 (MQ=60)
CAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATT < SRR4302540.9270833/94‑1 (MQ=60)
CAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATT < SRR4302540.5745695/94‑1 (MQ=60)
CAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATT < SRR4302540.2466847/94‑1 (MQ=60)
CAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCcact > SRR4302540.7959014/1‑90 (MQ=60)
AGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTT < SRR4302540.7989941/94‑1 (MQ=60)
GTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTC > SRR4302540.6381627/1‑94 (MQ=60)
GTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCA > SRR4302540.5073492/1‑94 (MQ=60)
TGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCA < SRR4302540.7228228/94‑1 (MQ=60)
GTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCAT < SRR4302540.5624531/94‑1 (MQ=60)
TATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATG > SRR4302540.6246690/1‑94 (MQ=60)
TCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGCTGTTACGACAACTGAT‑T‑TCC‑CCCCACTTCATGAA > SRR4302540.6527828/1‑94 (MQ=60)
TCGGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAA > SRR4302540.6527833/1‑94 (MQ=60)
GGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAAT < SRR4302540.1604049/94‑1 (MQ=60)
GGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAAT > SRR4302540.5312103/1‑94 (MQ=60)
GGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAAT < SRR4302540.2544830/94‑1 (MQ=60)
GGCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAAT < SRR4302540.7156261/94‑1 (MQ=60)
GCATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGG < SRR4302540.9294481/94‑1 (MQ=60)
CATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGG > SRR4302540.7472859/1‑94 (MQ=60)
CATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGG > SRR4302540.8843427/1‑94 (MQ=60)
ATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGC > SRR4302540.6940188/1‑94 (MQ=60)
ATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGC > SRR4302540.5106677/1‑94 (MQ=60)
ATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGC > SRR4302540.5106675/1‑94 (MQ=60)
ATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGC > SRR4302540.4893387/1‑94 (MQ=60)
ATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGC > SRR4302540.945113/1‑94 (MQ=60)
ATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGC > SRR4302540.9768754/1‑94 (MQ=60)
ATCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCG > SRR4302540.8444510/1‑94 (MQ=60)
TCCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCG < SRR4302540.10085200/94‑1 (MQ=60)
CCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGG < SRR4302540.84021/94‑1 (MQ=60)
CCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGG < SRR4302540.649975/94‑1 (MQ=60)
CCCGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGG < SRR4302540.4267323/94‑1 (MQ=60)
CGTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGC < SRR4302540.8795656/94‑1 (MQ=60)
GTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCT < SRR4302540.278563/94‑1 (MQ=60)
GTTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCT < SRR4302540.9391515/94‑1 (MQ=60)
TTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTG < SRR4302540.9964540/94‑1 (MQ=60)
TTGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTG < SRR4302540.1409688/94‑1 (MQ=60)
TGCGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGC > SRR4302540.2589932/1‑94 (MQ=60)
CGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTG > SRR4302540.217136/1‑94 (MQ=60)
CGCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGAAAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTG > SRR4302540.7233758/1‑94 (MQ=60)
GCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGATGT‑C‑C‑CCCCATTTCATGAAATGGCGGGCTGATGC > SRR4302540.595339/1‑94 (MQ=60)
GCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGC < SRR4302540.7872152/94‑1 (MQ=60)
GCAGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGC < SRR4302540.7871855/94‑1 (MQ=60)
AGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCAC > SRR4302540.5558468/1‑94 (MQ=60)
AGTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCAC > SRR4302540.8899152/1‑94 (MQ=60)
GTGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACA > SRR4302540.9450916/1‑94 (MQ=60)
TGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACAT < SRR4302540.5054199/94‑1 (MQ=60)
TGCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATG < SRR4302540.5172225/94‑1 (MQ=60)
GCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATG < SRR4302540.8727869/94‑1 (MQ=60)
GCGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATG < SRR4302540.1315356/94‑1 (MQ=60)
CGAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGG > SRR4302540.3514044/1‑94 (MQ=60)
GAAGAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGC < SRR4302540.1848068/94‑1 (MQ=60)
GAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGC < SRR4302540.4142928/94‑1 (MQ=60)
GAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGC < SRR4302540.2458538/94‑1 (MQ=60)
GAACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGC < SRR4302540.7059299/94‑1 (MQ=60)
AACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCG > SRR4302540.2949329/1‑94 (MQ=60)
AACAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGG < SRR4302540.3599712/94‑1 (MQ=60)
CAGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGC < SRR4302540.8894750/94‑1 (MQ=60)
AGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCG < SRR4302540.4386099/94‑1 (MQ=60)
AGCGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACACGGCGGCG > SRR4302540.6985414/1‑94 (MQ=60)
CGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAG < SRR4302540.10001642/94‑1 (MQ=60)
CGAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAG > SRR4302540.5106189/1‑94 (MQ=60)
GAAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑CACCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGA > SRR4302540.7172430/1‑94 (MQ=60)
AAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAA > SRR4302540.1289483/1‑94 (MQ=60)
AAGCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAA < SRR4302540.1420491/94‑1 (MQ=60)
GCATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATTGCGGGCTGCTGCACATGGCGGCGACAATAT > SRR4302540.6724085/1‑94 (MQ=60)
CATGCTATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATAT < SRR4302540.5402271/94‑1 (MQ=60)
CATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATAT < SRR4302540.6160147/94‑1 (MQ=60)
CATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATAT < SRR4302540.7529702/94‑1 (MQ=60)
CATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATAT < SRR4302540.1106230/94‑1 (MQ=60)
CATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATT > SRR4302540.7552652/1‑94 (MQ=60)
CATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATT < SRR4302540.6864216/94‑1 (MQ=60)
CATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCCGCACATGGCGGCGAGGATATT > SRR4302540.7552650/1‑94 (MQ=60)
CATCCGATGCGTAGAGTACAGATCCGATGTTACGACAAAGGAT‑T‑TCC‑CCCCTTTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATAT < SRR4302540.1106531/94‑1 (MQ=60)
ATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATT > SRR4302540.799074/1‑94 (MQ=60)
GCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGgataattc > SRR4302540.9759050/1‑86 (MQ=60)
CGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCC < SRR4302540.7735907/94‑1 (MQ=60)
CGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCC > SRR4302540.4067440/1‑94 (MQ=60)
TTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTC > SRR4302540.7873308/1‑94 (MQ=60)
GTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTC < SRR4302540.3856346/94‑1 (MQ=60)
TCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCA < SRR4302540.6936085/94‑1 (MQ=60)
TCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCA < SRR4302540.2783646/94‑1 (MQ=60)
CGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGGCAATATTGGCTTCCA > SRR4302540.4939813/1‑94 (MQ=60)
CGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAA > SRR4302540.4939814/1‑94 (MQ=60)
CGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAA > SRR4302540.3657035/1‑94 (MQ=60)
GTTGAGTACAGATTCTATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAG < SRR4302540.2828957/94‑1 (MQ=60)
GTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTTCGCATGGCGGCGAGAATATTGCCTTCAAC > SRR4302540.9580667/1‑94 (MQ=60)
GTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGGGGCGATGATATTGCCTTCtac > SRR4302540.7099625/1‑91 (MQ=60)
GTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAG < SRR4302540.4592864/94‑1 (MQ=60)
GTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGACAATATTGCCTTCCAG > SRR4302540.4009467/1‑94 (MQ=60)
TGAGTACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCT < SRR4302540.1227343/94‑1 (MQ=60)
TGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTG > SRR4302540.6520814/1‑94 (MQ=60)
GTACAGATTCGACGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGC > SRR4302540.6507360/1‑94 (MQ=60)
TACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCG < SRR4302540.7596095/94‑1 (MQ=60)
TACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCG < SRR4302540.7831613/94‑1 (MQ=60)
TACAGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCG < SRR4302540.3932946/94‑1 (MQ=60)
AGATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAAT < SRR4302540.8353071/94‑1 (MQ=60)
GATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATC < SRR4302540.6303833/94‑1 (MQ=60)
GATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCAAATC > SRR4302540.1667421/1‑94 (MQ=60)
GATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCT > SRR4302540.8591178/1‑94 (MQ=60)
ATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCT < SRR4302540.2100090/94‑1 (MQ=60)
ATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCT < SRR4302540.2929797/94‑1 (MQ=60)
ATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCT > SRR4302540.6729536/1‑94 (MQ=60)
ATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCT > SRR4302540.5335366/1‑94 (MQ=60)
ATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCT < SRR4302540.5491151/94‑1 (MQ=60)
ATTCGATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGCCGGCGAGAATGTTGCCTTCACGCTGGCGAATCT > SRR4302540.1789322/1‑94 (MQ=60)
ATTCGATGTTACCACAAAGTAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCT < SRR4302540.5491152/94‑1 (MQ=60)
ATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATTGCGGCGAGGATATTGCCTTCAAGCTagccaaactgtcgt > SRR4302540.8347160/1‑80 (MQ=60)
ATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGT > SRR4302540.3319725/1‑94 (MQ=60)
ATGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGT > SRR4302540.4958487/1‑94 (MQ=60)
TGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTT > SRR4302540.2979486/1‑94 (MQ=60)
TGTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTT < SRR4302540.2479944/94‑1 (MQ=60)
GTTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTC > SRR4302540.1492660/1‑94 (MQ=60)
TTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGTCGTTCT > SRR4302540.4277604/1‑94 (MQ=60)
TTACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCT < SRR4302540.4969190/94‑1 (MQ=60)
TACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTT < SRR4302540.6333253/94‑1 (MQ=60)
ACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTC > SRR4302540.7816819/1‑94 (MQ=60)
ACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTC < SRR4302540.3119570/94‑1 (MQ=60)
ACGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTC < SRR4302540.7345395/94‑1 (MQ=60)
ACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCG > SRR4302540.8122273/1‑94 (MQ=60)
aggCAAATGAT‑T‑T‑T‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGG < SRR4302540.1499846/91‑1 (MQ=60)
CGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCG > SRR4302540.4764277/1‑94 (MQ=60)
CGACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCG < SRR4302540.7422883/94‑1 (MQ=60)
CGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGG < SRR4302540.1500139/94‑1 (MQ=60)
CGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGG < SRR4302540.9397481/94‑1 (MQ=60)
GACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGG < SRR4302540.7374343/94‑1 (MQ=60)
ACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGGCTTCAAGCTGGCGAATGTGCCGCTCTTCGGG > SRR4302540.4775148/1‑94 (MQ=60)
ACAAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGT > SRR4302540.3743693/1‑94 (MQ=60)
CAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGA < SRR4302540.9318802/94‑1 (MQ=60)
AAATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGA < SRR4302540.3125868/94‑1 (MQ=60)
AATGAT‑TGC‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGAT < SRR4302540.2378682/94‑1 (MQ=60)
AATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGAT < SRR4302540.9207580/94‑1 (MQ=60)
AATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGAT < SRR4302540.6499775/94‑1 (MQ=60)
AATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGAT < SRR4302540.6314023/94‑1 (MQ=60)
AATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGAT < SRR4302540.5418789/94‑1 (MQ=60)
ATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGTATATTGCCTTCAAACTGGTGAATATGTCGTTCTTCGGTGCTA > SRR4302540.6248243/1‑94 (MQ=60)
ATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATA < SRR4302540.1289741/94‑1 (MQ=60)
ATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATA < SRR4302540.2076153/94‑1 (MQ=60)
ATGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATA > SRR4302540.6248242/1‑94 (MQ=60)
TGAT‑T‑TCC‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATAT < SRR4302540.5625512/94‑1 (MQ=60)
AT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCG > SRR4302540.3673183/1‑94 (MQ=60)
T‑T‑C‑C‑CCCCATTTCATGCAATGGCGGGCTGCTGCACATGGCGGCGGGAATATTGGCTTCAAGCTGGCGAATCTGCCCTTCTTCGGTGATATCCGA > SRR4302540.5092000/1‑94 (MQ=60)
T‑C‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAG < SRR4302540.2717716/94‑1 (MQ=60)
T‑C‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTCCTTCGGTGATATCCGAG > SRR4302540.5264420/1‑94 (MQ=60)
C‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGA > SRR4302540.9939613/1‑94 (MQ=60)
C‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGA > SRR4302540.5613970/1‑94 (MQ=60)
C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAA > SRR4302540.202208/1‑94 (MQ=60)
C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAACATGCCGTTCTTCGGGGAGATACGAGAA > SRR4302540.5940805/1‑94 (MQ=60)
CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAAA > SRR4302540.9323994/1‑94 (MQ=60)
CCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAAAG < SRR4302540.5173565/94‑1 (MQ=60)
CCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAAAG < SRR4302540.5656725/94‑1 (MQ=60)
CCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAAAG > SRR4302540.300741/1‑94 (MQ=60)
CCCATTTCATGAAAGGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAAAG < SRR4302540.5656726/94‑1 (MQ=60)
CCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAAAGT < SRR4302540.5861812/94‑1 (MQ=60)
CCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAAAGT < SRR4302540.7944695/94‑1 (MQ=60)
CATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAAAGTC > SRR4302540.8247044/1‑94 (MQ=60)
CATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAAAGTA > SRR4302540.8246809/1‑94 (MQ=60)
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CGCCCAGTGTATCGGCATCCCGTTGCGCAGTGCGAACAGCGAAACATGCGATTCGTTGAGTACAGATTCGATGTTACGACAAATGAT‑T‑T‑C‑CCCCATTTCATGAAATGGCGGGCTGCTGCACATGGCGGCGAGAATATTGCCTTCAAGCTGGCGAATCTGCCGTTCTTCGGTGATATCCGAGAAAGTC > NC_000913/1562843‑1563029
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
