Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,567,922	A→G	F198L (TTC→CTC)	xasA ←	acid sensitivity protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,567,922	0	A	G	100.0%	732.8 / NA	225	F198L (TTC→CTC)	xasA	acid sensitivity protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (121/104); total (121/104)

Only 100 of 230 total aligned reads displayed.

TCATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAAGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAATAAATGCA  >  NC_000913/1567832‑1568013

tcatttcattGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGt                                                                                           >  1:3143635/1‑93 (MQ=255)

 catttcattGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTc                                                                                          >  1:4084822/1‑93 (MQ=255)

   tttcattGCCGTGGGTTGCGGATGCTTCTTCGCCCATCTAACTCCGCATGTAGGCCACGAATCCTGCCCGGGTGCCCTCTTTAGCGAGGTcgg                                                                                        <  2:7724600/93‑3 (MQ=255)

   tttcattGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAg                                                                                        >  1:5009395/1‑93 (MQ=255)

   tttcattGACGTGGGCTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAg                                                                                        <  2:5138256/93‑1 (MQ=255)

    ttcattGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAgg                                                                                       <  1:6550369/93‑1 (MQ=255)

     tcattGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAggg                                                                                      >  1:1210590/1‑93 (MQ=255)

     tcattGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAggg                                                                                      >  1:7575095/1‑93 (MQ=255)

       attGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGgaa                                                                                    <  2:1595712/93‑1 (MQ=255)

       attGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGgaa                                                                                    <  2:4433384/93‑1 (MQ=255)

        ttGATGTGGGGTGCGTTTGCTTCTACGTCCTTATAATTTAAAAAGAAGGCAACTAATACTACCAGGGTGCCCACTTTTGAGTGGTCAGGtaag                                                                                   >  2:9219375/1‑93 (MQ=255)

        ttGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGgaag                                                                                   >  1:6261292/1‑93 (MQ=255)

          gACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGgaagaa                                                                                 <  2:2753876/93‑1 (MQ=255)

          gACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGgaagaa                                                                                 <  1:1670170/93‑1 (MQ=255)

           aCGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGTTGCCCACTTTAGAGAGGTCAGGGaagaag                                                                                >  1:9738679/1‑93 (MQ=255)

           aCGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGaagaag                                                                                >  2:2655124/1‑93 (MQ=255)

           aCGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGaagaag                                                                                >  1:2823746/1‑93 (MQ=255)

           aCGTGGGATGCGGATACTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGaagaag                                                                                <  2:8092969/93‑1 (MQ=255)

             gTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGt                                                                              <  1:9992970/93‑1 (MQ=255)

              tGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTc                                                                             >  1:949724/1‑93 (MQ=255)

              ggggTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTc                                                                             <  2:1407249/92‑1 (MQ=255)

               gggTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCt                                                                            >  1:7110256/1‑93 (MQ=255)

                ggTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGCGAGGTCAGGGAAGAAGGTCtt                                                                           >  1:4695659/1‑93 (MQ=255)

                  ttGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCg                                                                         <  1:2498596/93‑1 (MQ=255)

                   tGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGa                                                                        <  1:904130/93‑1 (MQ=255)

                       gATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATcc                                                                    <  2:7321212/93‑1 (MQ=255)

                       gATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATcc                                                                    >  1:9871265/1‑93 (MQ=255)

                        aTGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCa                                                                   <  1:5647407/93‑1 (MQ=255)

                          gCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCAtt                                                                 <  2:7050133/93‑1 (MQ=255)

                            ttCTACGCGCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTc                                                               <  2:5994104/93‑1 (MQ=255)

                             tCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCg                                                              >  1:719134/1‑93 (MQ=255)

                              cTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGa                                                             >  1:9806586/1‑93 (MQ=255)

                              cTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGa                                                             <  1:7912308/93‑1 (MQ=255)

                               tACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGAt                                                            <  1:5685248/93‑1 (MQ=255)

                                   cccATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCa                                                        <  1:4841967/93‑1 (MQ=255)

                                    ccATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGGCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCaa                                                       >  2:9483608/1‑93 (MQ=255)

                                     cATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAAc                                                      >  2:4731647/1‑93 (MQ=255)

                                     cATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAAc                                                      >  1:8818632/1‑93 (MQ=255)

                                      atatAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACg                                                     <  1:5881561/93‑1 (MQ=255)

                                      atatAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACg                                                     <  1:148167/93‑1 (MQ=255)

                                       tataACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAATgg                                                    >  2:5833057/1‑93 (MQ=255)

                                       tataACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACgg                                                    >  2:5727328/1‑93 (MQ=255)

                                       tataACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACgg                                                    <  1:327385/93‑1 (MQ=255)

                                       tataACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACgg                                                    >  2:7542660/1‑93 (MQ=255)

                                       tataACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACgg                                                    <  1:9067845/93‑1 (MQ=255)

                                        ataACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACggg                                                   <  2:3836604/93‑1 (MQ=255)

                                        ataACTCAAAATGAAGACAACAAATACTGCCAGGGTGCCCACTTGAGACAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACggg                                                   <  1:7583616/93‑1 (MQ=255)

                                         taACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACgggg                                                  >  1:2294446/1‑93 (MQ=255)

                                          aaCTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACggggg                                                 <  1:1990023/93‑1 (MQ=255)

                                           aCTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGc                                                <  1:2637633/93‑1 (MQ=255)

                                           aCTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGc                                                >  1:6628587/1‑93 (MQ=255)

                                           aCTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGc                                                <  2:8788200/93‑1 (MQ=255)

                                            cTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCa                                               <  1:136066/93‑1 (MQ=255)

                                                aaaTGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCga                                           >  1:8232313/1‑92 (MQ=255)

                                                  aTGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCAcc                                             <  2:5285765/89‑1 (MQ=255)

                                                    gAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTg                                       <  2:4870158/93‑1 (MQ=255)

                                                    gAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTg                                       >  2:4072306/1‑93 (MQ=255)

                                                     aaGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGc                                      <  1:8474123/93‑1 (MQ=255)

                                                     aaGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGc                                      <  1:2532957/93‑1 (MQ=255)

                                                      aGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCa                                     >  1:7112351/1‑93 (MQ=255)

                                                      aGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCa                                     <  2:5480367/93‑1 (MQ=255)

                                                          aacaaATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATa                                 >  2:4370515/1‑93 (MQ=255)

                                                          aacaaATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATa                                 <  1:7631716/93‑1 (MQ=255)

                                                          aacaaATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATa                                 >  2:678482/1‑93 (MQ=255)

                                                           acaaATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATaa                                <  1:5057245/93‑1 (MQ=255)

                                                           acaaATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATaa                                <  1:1009804/93‑1 (MQ=255)

                                                           acaaATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATaa                                >  1:8729548/1‑93 (MQ=255)

                                                            caaATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATaaa                               <  1:1319030/93‑1 (MQ=255)

                                                            caaATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATaaa                               >  1:4243426/1‑93 (MQ=255)

                                                             aaaTACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAAt                              <  2:3516825/93‑1 (MQ=255)

                                                             aaaTACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAAt                              >  2:7769535/1‑93 (MQ=255)

                                                              aaTACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATa                             <  2:7901235/93‑1 (MQ=255)

                                                              aaTACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATa                             >  1:9210470/1‑93 (MQ=255)

                                                              aaTACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATa                             >  2:1115303/1‑93 (MQ=255)

                                                              aaTACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATa                             >  1:5584241/1‑93 (MQ=255)

                                                               aTACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAg                            >  1:6138698/1‑93 (MQ=255)

                                                               aTACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAg                            >  2:6593805/1‑93 (MQ=255)

                                                                 actacCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAgac                          >  2:9146200/1‑91 (MQ=255)

                                                                   tacCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGc                        <  2:1934627/93‑1 (MQ=255)

                                                                    acCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCt                       <  1:6402535/93‑1 (MQ=255)

                                                                      cAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTaa                     >  1:6088362/1‑93 (MQ=255)

                                                                      cAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTaa                     >  2:7275213/1‑93 (MQ=255)

                                                                      cAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCGTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAACTAGCAGCTaa                     >  1:4056106/1‑93 (MQ=255)

                                                                         ggTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGc                  <  1:3675253/93‑1 (MQ=255)

                                                                         ggTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGc                  <  2:2221071/93‑1 (MQ=255)

                                                                         ggTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGc                  <  1:9663073/93‑1 (MQ=255)

                                                                         ggTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGc                  >  1:8027701/1‑93 (MQ=255)

                                                                           tGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGa                >  2:7965336/1‑93 (MQ=255)

                                                                               cACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCaa            <  2:6171566/93‑1 (MQ=255)

                                                                               cACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCaa            <  2:474033/93‑1 (MQ=255)

                                                                                aCTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCaaa           >  2:1169470/1‑93 (MQ=255)

                                                                                aCTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCaaa           >  1:387685/1‑93 (MQ=255)

                                                                                 cTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCaaaa          >  2:322697/1‑93 (MQ=255)

                                                                                 cTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCaaaa          >  2:6263499/1‑93 (MQ=255)

                                                                                 cTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCaaaa          <  2:375756/93‑1 (MQ=255)

                                                                                  tttAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAaaat         <  2:8667413/93‑1 (MQ=255)

                                                                                  tttAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAaaat         >  1:2208806/1‑93 (MQ=255)

                                                                                   ttAGAGAGGTCAGGGAAGAAGGTCTTCTAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAaaata        <  1:8807073/93‑1 (MQ=255)

                                                                                     agagagGTCAGGGAAGAAGGTCTTCGAGTCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAaaataaa      <  2:8392850/93‑1 (MQ=255)

                                                                                      gagaGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAaaataaat     >  2:3164957/1‑93 (MQ=255)

TCATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAAGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAATAAATGCA  >  NC_000913/1567832‑1568013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCTCATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAAGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAATAAATGCAG  >  NC_000913/1567829‑1568014

TGCTCATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAG                                                                                              <  SRR4302540.1168227/94‑1 (MQ=60)

TGCTCATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAG                                                                                              <  SRR4302540.7681623/94‑1 (MQ=60)

TGCTCATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAG                                                                                              <  SRR4302540.7681624/94‑1 (MQ=60)

 GCTCATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGG                                                                                             >  SRR4302540.5495136/1‑94 (MQ=60)

  CTCATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGT                                                                                            >  SRR4302540.3177898/1‑94 (MQ=60)

  CTCATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGT                                                                                            <  SRR4302540.5612419/94‑1 (MQ=60)

   TCATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTC                                                                                           >  SRR4302540.4128873/1‑94 (MQ=60)

     ATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAG                                                                                         >  SRR4302540.5063638/1‑94 (MQ=60)

       TTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGG                                                                                       <  SRR4302540.6623025/94‑1 (MQ=60)

       TTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGG                                                                                       >  SRR4302540.1223001/1‑94 (MQ=60)

       TTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGG                                                                                       >  SRR4302540.7660087/1‑94 (MQ=60)

       TTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGA                                                                                       >  SRR4302540.2036087/1‑94 (MQ=60)

          ATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAG                                                                                    >  SRR4302540.6330950/1‑94 (MQ=60)

           TTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGA                                                                                   <  SRR4302540.4423613/94‑1 (MQ=60)

            TGACGTGGGTTGCGAATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAA                                                                                  <  SRR4302540.10077965/94‑1 (MQ=60)

             GACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGTTGCCCACTTTAGAGAGGTCAGGGAAGAAG                                                                                 >  SRR4302540.9853008/1‑94 (MQ=60)

             GACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGTTGCCCACTTTAGAGAGGTCAGGGAAGAAG                                                                                 >  SRR4302540.9853009/1‑94 (MQ=60)

             GACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAG                                                                                 <  SRR4302540.1404444/94‑1 (MQ=60)

             GACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAG                                                                                 <  SRR4302540.1688335/94‑1 (MQ=60)

             GACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAG                                                                                 >  SRR4302540.2854252/1‑94 (MQ=60)

               CGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGT                                                                               <  SRR4302540.5694928/94‑1 (MQ=60)

                GTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTC                                                                              <  SRR4302540.10109428/94‑1 (MQ=60)

                GTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTC                                                                              >  SRR4302540.959603/1‑94 (MQ=60)

                 TGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCT                                                                             >  SRR4302540.7189392/1‑94 (MQ=60)

                  GGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGCGAGGTCAGGGAAGAAGGTCTT                                                                            >  SRR4302540.4745856/1‑94 (MQ=60)

                    GTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCG                                                                          <  SRR4302540.3285854/94‑1 (MQ=60)

                     TTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGA                                                                         <  SRR4302540.2525539/94‑1 (MQ=60)

                     TTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGA                                                                         <  SRR4302540.2525540/94‑1 (MQ=60)

                      TGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAA                                                                        <  SRR4302540.913727/94‑1 (MQ=60)

                         GGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCC                                                                     >  SRR4302540.9522526/1‑94 (MQ=60)

                         GGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCC                                                                     >  SRR4302540.9986554/1‑94 (MQ=60)

                         GGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCC                                                                     >  SRR4302540.1596602/1‑94 (MQ=60)

                          GATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCA                                                                    >  SRR4302540.2289869/1‑94 (MQ=60)

                           ATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCAT                                                                   <  SRR4302540.5709568/94‑1 (MQ=60)

                            TGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATT                                                                  >  SRR4302540.7246467/1‑94 (MQ=60)

                              CTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTC                                                                <  SRR4302540.6237419/94‑1 (MQ=60)

                               TTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCG                                                               >  SRR4302540.726846/1‑94 (MQ=60)

                                TCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGA                                                              >  SRR4302540.9921374/1‑94 (MQ=60)

                                TCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGA                                                              >  SRR4302540.9921373/1‑94 (MQ=60)

                                TCTACGCCCATACATCTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGA                                                              >  SRR4302540.7904362/1‑94 (MQ=60)

                                 CTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGAT                                                             <  SRR4302540.8004562/94‑1 (MQ=60)

                                 CTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGAT                                                             >  SRR4302540.4872364/1‑94 (MQ=60)

                                 CTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGAT                                                             >  SRR4302540.9971526/1‑94 (MQ=60)

                                 CTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGAT                                                             >  SRR4302540.5867329/1‑94 (MQ=60)

                                  TACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATA                                                            <  SRR4302540.5747837/94‑1 (MQ=60)

                                  CACGCCAATATAACTAAAAGTGAAAGCAACAAAAACTACCAGGGTGCCTACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATA                                                            <  SRR4302540.9026805/94‑1 (MQ=60)

                                    CGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGGGCCCACTTTAGAGAGGCGAGGAGCGAAGGTCTTCGAATCCATTTCTATAAC                                                          >  SRR4302540.8322901/1‑94 (MQ=60)

                                     GCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCA                                                         >  SRR4302540.5632344/1‑94 (MQ=60)

                                      CCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAA                                                        <  SRR4302540.4893826/94‑1 (MQ=60)

                                       CCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAAC                                                       >  SRR4302540.8920593/1‑94 (MQ=60)

                                       CCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAAC                                                       >  SRR4302540.8920592/1‑94 (MQ=60)

                                        CATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACG                                                      <  SRR4302540.4099969/94‑1 (MQ=60)

                                        CATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACG                                                      >  SRR4302540.9301876/1‑94 (MQ=60)

                                         ATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGG                                                     <  SRR4302540.149700/94‑1 (MQ=60)

                                         ATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGG                                                     <  SRR4302540.5946563/94‑1 (MQ=60)

                                         ATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGG                                                     <  SRR4302540.9371301/94‑1 (MQ=60)

                                         ATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGG                                                     <  SRR4302540.2550340/94‑1 (MQ=60)

                                         ATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGG                                                     >  SRR4302540.7664791/1‑94 (MQ=60)

                                          TATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGG                                                    <  SRR4302540.9176725/94‑1 (MQ=60)

                                          TATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGG                                                    <  SRR4302540.330664/94‑1 (MQ=60)

                                          TATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGG                                                    <  SRR4302540.330665/94‑1 (MQ=60)

                                           ATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGG                                                   >  SRR4302540.2319138/1‑94 (MQ=60)

                                           ATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGG                                                   >  SRR4302540.972664/1‑94 (MQ=60)

                                           ATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGG                                                   <  SRR4302540.7668756/94‑1 (MQ=60)

                                           ATAACTCAAAATGAAGACAACAAATACTGCCAGGGTGCCCACTTGAGACAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGG                                                   <  SRR4302540.7668755/94‑1 (MQ=60)

                                             AACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGC                                                 <  SRR4302540.1292261/94‑1 (MQ=60)

                                             AACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGC                                                 >  SRR4302540.6701971/1‑94 (MQ=60)

                                             AACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGC                                                 <  SRR4302540.2011591/94‑1 (MQ=60)

                                              ACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCA                                                <  SRR4302540.5077065/94‑1 (MQ=60)

                                              ACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCA                                                <  SRR4302540.2666202/94‑1 (MQ=60)

                                              ACTCAAAATGAAGACAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCA                                                <  SRR4302540.4086343/94‑1 (MQ=60)

                                               CTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCAC                                               <  SRR4302540.137493/94‑1 (MQ=60)

                                                TCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACC                                              >  SRR4302540.7356868/1‑94 (MQ=60)

                                                  AAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGG                                            >  SRR4302540.8328005/1‑94 (MQ=60)

                                                  AAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGA                                            >  SRR4302540.8328004/1‑94 (MQ=60)

                                                    AATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAG                                          <  SRR4302540.2394751/94‑1 (MQ=60)

                                                    AATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAG                                          >  SRR4302540.7171412/1‑94 (MQ=60)

                                                    AATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGAAG                                          >  SRR4302540.5343522/1‑94 (MQ=60)

                                                    AAAGAAGGCAACAAATCCTCCCAGGTTACCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAG                                          <  SRR4302540.6671557/94‑1 (MQ=60)

                                                     ATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGT                                         <  SRR4302540.4092266/94‑1 (MQ=60)

                                                      TGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTG                                        >  SRR4302540.3916214/1‑94 (MQ=60)

                                                      AGAAGGCAAAAAATACTACCCGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTG                                        <  SRR4302540.8742923/94‑1 (MQ=60)

                                                       GAAGGCAACAAATACTACCATGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGC                                       >  SRR4302540.574600/1‑94 (MQ=60)

                                                        AAGGCAACAAATGCTACCAGGCTGCGCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCA                                      <  SRR4302540.2560283/94‑1 (MQ=60)

                                                        AAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCA                                      <  SRR4302540.8572539/94‑1 (MQ=60)

                                                        AAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCA                                      <  SRR4302540.2560282/94‑1 (MQ=60)

                                                        AAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCA                                      >  SRR4302540.7191516/1‑94 (MQ=60)

                                                        AAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCA                                      >  SRR4302540.7191517/1‑94 (MQ=60)

                                                        AAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCA                                      <  SRR4302540.3210825/94‑1 (MQ=60)

                                                         AGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAAGCCATTTCGATAGCAACGGGGGCACCGGAGTGCAG                                     >  SRR4302540.6282096/1‑94 (MQ=60)

                                                          GGCAACAAATACTACCAGGTTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGA                                    <  SRR4302540.6621878/94‑1 (MQ=60)

                                                           GCAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGAT                                   <  SRR4302540.4557262/94‑1 (MQ=60)

                                                            CAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATA                                  >  SRR4302540.8928064/1‑94 (MQ=60)

                                                            CAACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATA                                  >  SRR4302540.8614962/1‑94 (MQ=60)

                                                             AACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAA                                 >  SRR4302540.8830920/1‑94 (MQ=60)

                                                             AACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAA                                 <  SRR4302540.7717564/94‑1 (MQ=60)

                                                             AACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAA                                 >  SRR4302540.8830921/1‑94 (MQ=60)

                                                              ACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAA                                <  SRR4302540.5111919/94‑1 (MQ=60)

                                                              ACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAA                                >  SRR4302540.4289594/1‑94 (MQ=60)

                                                              ACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAA                                <  SRR4302540.1020044/94‑1 (MQ=60)

                                                              ACAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGACTTCGCATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAA                                >  SRR4302540.4289593/1‑94 (MQ=60)

                                                               CAAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAAT                               <  SRR4302540.1332757/94‑1 (MQ=60)

                                                                AAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATA                              >  SRR4302540.5645706/1‑94 (MQ=60)

                                                                AAATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATA                              >  SRR4302540.9320984/1‑94 (MQ=60)

                                                                 AATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAG                             >  SRR4302540.6207068/1‑94 (MQ=60)

                                                                 AATACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAG                             >  SRR4302540.6207067/1‑94 (MQ=60)

                                                                   TACTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCC                           <  SRR4302540.2036408/94‑1 (MQ=60)

                                                                     CTACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGC                         >  SRR4302540.9866294/1‑94 (MQ=60)

                                                                       ACCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTA                       <  SRR4302540.6473804/94‑1 (MQ=60)

                                                                        CCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCACCGGGGGCACCGGAGTGCAGATAAATAGCCGCTAA                      >  SRR4302540.6156119/1‑94 (MQ=60)

                                                                        CCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAA                      >  SRR4302540.7584214/1‑94 (MQ=60)

                                                                        CCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAA                      >  SRR4302540.6421776/1‑94 (MQ=60)

                                                                        CCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAA                      >  SRR4302540.6156120/1‑94 (MQ=60)

                                                                        CCAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCGTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAACTAGCAGCTAA                      >  SRR4302540.4099835/1‑94 (MQ=60)

                                                                         CAGGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAAT                     >  SRR4302540.9153267/1‑94 (MQ=60)

                                                                           GGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGC                   >  SRR4302540.8121053/1‑94 (MQ=60)

                                                                           GGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGC                   >  SRR4302540.4917642/1‑94 (MQ=60)

                                                                           GGGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGC                   <  SRR4302540.2850194/94‑1 (MQ=60)

                                                                            GGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCG                  <  SRR4302540.9776813/94‑1 (MQ=60)

                                                                            GGTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCG                  <  SRR4302540.3715437/94‑1 (MQ=60)

                                                                             GTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGA                 <  SRR4302540.3159799/94‑1 (MQ=60)

                                                                             GTGCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGA                 >  SRR4302540.5797132/1‑94 (MQ=60)

                                                                               GCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATC               <  SRR4302540.1337255/94‑1 (MQ=60)

                                                                               GCCCACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATC               <  SRR4302540.1989330/94‑1 (MQ=60)

                                                                                  CACTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAA            >  SRR4302540.391697/1‑94 (MQ=60)

                                                                                    CTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAAT          <  SRR4302540.7036562/94‑1 (MQ=60)

                                                                                    CTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAAT          >  SRR4302540.1023997/1‑94 (MQ=60)

                                                                                    CTTTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAAT          >  SRR4302540.2232666/1‑94 (MQ=60)

                                                                                      TTAGAGAGGTCAGGGAAGAAGGTCTTCTAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAATAA        <  SRR4302540.8908890/94‑1 (MQ=60)

                                                                                      TTAGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAATAA        >  SRR4302540.138673/1‑94 (MQ=60)

                                                                                        AGAGAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAATAAAT      <  SRR4302540.8094777/94‑1 (MQ=60)

                                                                                           GAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAATAAATGCA   >  SRR4302540.7596818/1‑94 (MQ=60)

                                                                                           GAGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAATAAATGCA   >  SRR4302540.4486472/1‑94 (MQ=60)

                                                                                           GAGGTCAGGGAAGAAGGTCTGCGAATCCATTTCGATAGCAACGGGGGCAGCTGAGTGCAGATAAATAGCCGCTAATGCGATCAAAATAAATGCA   <  SRR4302540.242811/94‑1 (MQ=60)

                                                                                            AGGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAATAAATGCAG  <  SRR4302540.7864813/94‑1 (MQ=60)

                                                                                            AAGTGAGGGAAGAATGTCGTCGAATCCATTTCGATAGCAAAGGGGGCACCGGAGTGCAGATAAATAGCCGCGAATGCGATCAAAATAAATGCAG  <  SRR4302540.7864814/94‑1 (MQ=60)

TGCTCATTTCATTGACGTGGGTTGCGGATGCTTCTACGCCCATATAACTCAAAATGAAGGCAACAAATACTACCAGGGTGCCCACTTTAGAGAAGTCAGGGAAGAAGGTCTTCGAATCCATTTCGATAGCAACGGGGGCACCGGAGTGCAGATAAATAGCCGCTAATGCGATCAAAATAAATGCAG  >  NC_000913/1567829‑1568014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`