Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,568,197 |
A→G |
M106T (ATG→ACG) |
xasA ← |
acid sensitivity protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,568,197 | 0 | A | G | 99.1%
| 692.6
/ ‑2.9
| 219 | M106T (ATG→ACG) | xasA | acid sensitivity protein |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (99/118); total (101/118) |
| Fisher's exact test for biased strand distribution p-value = 2.12e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-02 |
Only 100 of 227 total aligned reads displayed.
ATGAGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCATCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGCG > NC_000913/1568107‑1568286
|
tgaGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCg > 2:5551644/1‑93 (MQ=255)
gaGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCgg < 2:6737037/93‑1 (MQ=255)
tgctgcAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAAt > 2:3610140/1‑93 (MQ=255)
tgctgcAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTCGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAAt < 1:5792239/93‑1 (MQ=255)
ctgcAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATaa > 2:5971825/1‑93 (MQ=255)
tgcAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATaaa > 2:7311344/1‑93 (MQ=255)
gcAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATaaaa < 1:1880203/93‑1 (MQ=255)
gcAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGCGCCCCTAACACGAAATAGAGCGTCGGAATaaaa > 2:9752187/1‑93 (MQ=255)
cAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAAc > 1:4114609/1‑93 (MQ=255)
cAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAAc > 1:9390637/1‑93 (MQ=255)
aaTAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAAcc < 2:9693851/93‑1 (MQ=255)
aaTAGTCTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAAcc < 1:7580675/93‑1 (MQ=255)
tAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCaa < 1:498634/93‑1 (MQ=255)
aaGTTGTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCaa < 1:3225460/92‑1 (MQ=255)
aGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAAt < 2:7540361/93‑1 (MQ=255)
ttttGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATgg > 1:6936418/1‑93 (MQ=255)
tGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGa < 1:3211682/93‑1 (MQ=255)
tGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGa < 2:6678517/93‑1 (MQ=255)
gTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACCCGAAATAAAGCGTCGGAATAAAACCAATGGCGAtt < 1:678482/93‑1 (MQ=255)
gTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGAtt > 2:7510333/1‑93 (MQ=255)
gTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGAtt < 2:2045668/93‑1 (MQ=255)
tAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGAttt > 1:1173942/1‑93 (MQ=255)
tAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGAttt > 2:4429714/1‑93 (MQ=255)
aaTGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTg > 1:3299505/1‑93 (MQ=255)
aTGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGc > 2:3782552/1‑93 (MQ=255)
tGGGGTGTTCATGCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCa < 1:7507211/93‑1 (MQ=255)
ggggTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAg > 1:4819981/1‑93 (MQ=255)
ggggTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAg > 2:6076410/1‑93 (MQ=255)
ggggTCTGCATTCAGCGCTGGCCCTTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAg < 1:1042371/93‑1 (MQ=255)
ggTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGAt < 1:5890551/93‑1 (MQ=255)
ggTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGAt < 2:8804377/93‑1 (MQ=255)
gTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATa < 2:6914015/93‑1 (MQ=255)
cTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGc < 2:5018402/93‑1 (MQ=255)
ttcattcaGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGcc > 2:5049451/1‑93 (MQ=255)
tcattcaGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCa < 2:909593/93‑1 (MQ=255)
tcattcaGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCa > 1:573242/1‑93 (MQ=255)
attcaGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCaaa > 1:2661593/1‑93 (MQ=255)
attcaGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCaaa < 2:9633750/93‑1 (MQ=255)
tcaGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATg < 1:5682327/93‑1 (MQ=255)
tcaGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATg > 1:3585266/1‑93 (MQ=255)
aGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATgag > 1:4212822/1‑93 (MQ=255)
cgcTGTCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGAAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGAt < 2:9044697/93‑1 (MQ=255)
cgcTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGAt < 2:387685/93‑1 (MQ=255)
cgcTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCAGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGAt < 1:4932410/93‑1 (MQ=255)
gcTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATc > 1:5641730/1‑93 (MQ=255)
gcTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATc > 2:8792776/1‑93 (MQ=255)
cTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCg > 2:4937713/1‑93 (MQ=255)
cTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCg > 2:309638/1‑93 (MQ=255)
tGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGCGCTCGc < 2:8920223/93‑1 (MQ=255)
tGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGc < 1:8093689/93‑1 (MQ=255)
tGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGc < 1:7769534/93‑1 (MQ=255)
tGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGc < 1:7274627/93‑1 (MQ=255)
ggCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCt < 2:7813061/93‑1 (MQ=255)
gCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTg > 2:9128720/1‑93 (MQ=255)
ccATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCANATAGCCAAATGAGATCGCTGc > 1:376232/1‑93 (MQ=255)
aTTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCaa > 1:1351648/1‑93 (MQ=255)
aTTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCaa > 1:820133/1‑93 (MQ=255)
tttCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCaaa > 1:4820978/1‑93 (MQ=255)
tttCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCaaa > 2:6791381/1‑93 (MQ=255)
tCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATc < 1:9944478/93‑1 (MQ=255)
ggATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATcccc > 2:3314352/1‑93 (MQ=255)
gATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCa < 2:230145/93‑1 (MQ=255)
aTGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCAt < 1:8885185/93‑1 (MQ=255)
aTGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGCCGATTTGAAGAAACCCAATTGAGATCGCTGCAAATCCCCac > 2:2431109/1‑92 (MQ=255)
aTGTAGGAGAGTGCCCCTAACACGAAATAGAGCATCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCAt > 1:5971973/1‑93 (MQ=255)
tGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCAtc < 1:7169972/93‑1 (MQ=255)
tGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCAtc < 1:2749598/93‑1 (MQ=255)
gTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCAtct < 1:4370516/93‑1 (MQ=255)
gTAGGAGAGTGCCCCTAACACGAAATAGAGCATCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCAtct > 1:5324089/1‑93 (MQ=255)
gTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCa > 1:2390737/1‑93 (MQ=255)
tGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCag > 2:5615816/1‑93 (MQ=255)
tGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCag < 2:5733971/93‑1 (MQ=255)
ccccTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCagag > 2:8564448/1‑93 (MQ=255)
ccccTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCagag > 2:7634454/1‑93 (MQ=255)
ccccTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCagag < 2:7260874/93‑1 (MQ=255)
ccTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTa > 2:4966104/1‑93 (MQ=255)
cTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTAt > 2:465071/1‑93 (MQ=255)
tAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTAtt > 2:2134604/1‑93 (MQ=255)
tAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTAtt > 2:849154/1‑93 (MQ=255)
aaCACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTAttt > 1:219017/1‑93 (MQ=255)
aaCACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTAttt < 1:8592434/93‑1 (MQ=255)
aaCACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTAttt < 2:8092928/93‑1 (MQ=255)
aaCACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCAAAATGAGATCGCGGCAAATCCCCATCTCGGCCCCAGAGTAttt < 2:6351045/93‑1 (MQ=255)
acacGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTg < 2:5862701/93‑1 (MQ=255)
cacGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGa < 1:7965337/93‑1 (MQ=255)
cacGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGa < 1:9119667/93‑1 (MQ=255)
cacGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGa < 2:2234886/93‑1 (MQ=255)
cacGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGa < 2:279710/93‑1 (MQ=255)
acGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGAt < 1:8246693/93‑1 (MQ=255)
acGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGAt > 1:3050083/1‑93 (MQ=255)
aaaaAGAGCGTAGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCCGCAAATCCCCATCTCGGCCCCAGAGTATTTGATAcc < 2:4203577/93‑1 (MQ=255)
aaaTAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATAcc > 2:3493979/1‑93 (MQ=255)
aaaTAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATAcc < 2:3833639/93‑1 (MQ=255)
aaTAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATAccc > 2:1557346/1‑93 (MQ=255)
aTAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCa > 1:6963558/1‑93 (MQ=255)
agagCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTTCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAgg < 2:4243425/93‑1 (MQ=255)
agagCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAgg < 1:1433391/93‑1 (MQ=255)
agagCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAgg < 1:8438678/93‑1 (MQ=255)
agagCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAgg < 1:3846619/93‑1 (MQ=255)
agCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGca > 1:8311822/1‑92 (MQ=255)
|
ATGAGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCATCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGCG > NC_000913/1568107‑1568286
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATGATGAGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCATCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGCGAAGA > NC_000913/1568104‑1568290
|
ATGATGAGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCG < SRR4302540.1126858/94‑1 (MQ=60)
ATGATGAGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCG < SRR4302540.344475/94‑1 (MQ=60)
ATGATGAGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCG < SRR4302540.3960606/94‑1 (MQ=60)
ATGATGAGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCG < SRR4302540.9320737/94‑1 (MQ=60)
TGATGAGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGT > SRR4302540.3531228/1‑94 (MQ=60)
ATGAGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCG > SRR4302540.7273457/1‑94 (MQ=60)
AGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAA > SRR4302540.7594717/1‑94 (MQ=60)
TGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATA < SRR4302540.2368363/94‑1 (MQ=60)
TGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATA < SRR4302540.5856236/94‑1 (MQ=60)
TGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTCGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATA < SRR4302540.5856237/94‑1 (MQ=60)
CTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAA > SRR4302540.3739939/1‑94 (MQ=60)
CTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAA < SRR4302540.3249549/94‑1 (MQ=60)
GCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAAC < SRR4302540.1900792/94‑1 (MQ=60)
GCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAAC > SRR4302540.4159035/1‑94 (MQ=60)
GCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAAC > SRR4302540.4159036/1‑94 (MQ=60)
GCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAAC > SRR4302540.9502387/1‑94 (MQ=60)
AATAGTCTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCA < SRR4302540.7665757/94‑1 (MQ=60)
TAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAAT < SRR4302540.503977/94‑1 (MQ=60)
TAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAAT < SRR4302540.503976/94‑1 (MQ=60)
TAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAAT < SRR4302540.3260798/94‑1 (MQ=60)
AAGTTGTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAAT < SRR4302540.3260523/94‑1 (MQ=60)
GTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGG > SRR4302540.7013627/1‑94 (MQ=60)
TTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCG < SRR4302540.2703276/94‑1 (MQ=60)
TTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCG < SRR4302540.9426357/94‑1 (MQ=60)
TTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGA < SRR4302540.7936921/94‑1 (MQ=60)
TGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGAT < SRR4302540.3246546/94‑1 (MQ=60)
GGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATT < SRR4302540.5712070/94‑1 (MQ=60)
GGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATT > SRR4302540.7253460/1‑94 (MQ=60)
GTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACCCGAAATAAAGCGTCGGAATAAAACCAATGGCGATTT < SRR4302540.685745/94‑1 (MQ=60)
GTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTT > SRR4302540.8368298/1‑94 (MQ=60)
GTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTT > SRR4302540.1186081/1‑94 (MQ=60)
TAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTG > SRR4302540.3335621/1‑94 (MQ=60)
AATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGC > SRR4302540.4020502/1‑94 (MQ=60)
ATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCA < SRR4302540.3315474/94‑1 (MQ=60)
TGGGGTGTTCATGCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAG < SRR4302540.7591123/94‑1 (MQ=60)
TGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAG > SRR4302540.4871578/1‑94 (MQ=60)
TGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAG > SRR4302540.4871577/1‑94 (MQ=60)
TGGGGTCTTCATTCAGCGCTGGCCATTTCAGGAGGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAG < SRR4302540.9807083/94‑1 (MQ=60)
GGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGA < SRR4302540.1052968/94‑1 (MQ=60)
GGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGAGTCGGAATAAAACCAATGGCGATTTGCAGA > SRR4302540.4706823/1‑94 (MQ=60)
GGGGTCTGCATTCAGCGCTGGCCCTTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGA < SRR4302540.1052967/94‑1 (MQ=60)
GGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATA > SRR4302540.1535642/1‑94 (MQ=60)
GGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATA < SRR4302540.5955630/94‑1 (MQ=60)
TCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGC > SRR4302540.535137/1‑94 (MQ=60)
CTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCC < SRR4302540.8511539/94‑1 (MQ=60)
TTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCA > SRR4302540.579464/1‑94 (MQ=60)
CATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAA > SRR4302540.3809099/1‑94 (MQ=60)
CATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAA > SRR4302540.2690464/1‑94 (MQ=60)
TTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATG > SRR4302540.3624426/1‑94 (MQ=60)
TCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGA < SRR4302540.5744887/94‑1 (MQ=60)
CAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAG > SRR4302540.4258691/1‑94 (MQ=60)
CAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAG < SRR4302540.4727572/94‑1 (MQ=60)
GCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATCGCCAAATGAGAT < SRR4302540.3813901/94‑1 (MQ=60)
CGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATC > SRR4302540.5703823/1‑94 (MQ=60)
CGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATC < SRR4302540.5897558/94‑1 (MQ=60)
CGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCAGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATC < SRR4302540.4985604/94‑1 (MQ=60)
CTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGCCGGAATAAAACCAATGGCGATTTGCAGATAGACAAATGAGATCGC > SRR4302540.2647348/1‑94 (MQ=60)
TGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCT < SRR4302540.7860371/94‑1 (MQ=60)
TGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCT < SRR4302540.7860369/94‑1 (MQ=60)
TGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCT < SRR4302540.7355799/94‑1 (MQ=60)
TGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCT < SRR4302540.8187637/94‑1 (MQ=60)
TGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCT > SRR4302540.3561712/1‑94 (MQ=60)
TGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCG > SRR4302540.817454/1‑94 (MQ=60)
GGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTG > SRR4302540.8570952/1‑94 (MQ=60)
GGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTC > SRR4302540.6006089/1‑94 (MQ=60)
GCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCANATAGCCAAATGAGATCGCTGC > SRR4302540.380125/1‑94 (MQ=60)
GCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGC < SRR4302540.9026961/94‑1 (MQ=60)
CCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGCTAGCCAAATAAGATCGGTGCA > SRR4302540.4277643/1‑94 (MQ=60)
CCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCA < SRR4302540.5790402/94‑1 (MQ=60)
CCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCA < SRR4302540.5790401/94‑1 (MQ=60)
CATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAA > SRR4302540.828848/1‑94 (MQ=60)
CATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAA > SRR4302540.1365863/1‑94 (MQ=60)
CATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATAGCGATTTGCAGATAGCCAAATGAGATCCCTGCAA > SRR4302540.1365862/1‑94 (MQ=60)
ATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAA > SRR4302540.2016477/1‑94 (MQ=60)
ATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAA > SRR4302540.4872586/1‑94 (MQ=60)
ATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAA > SRR4302540.4872585/1‑94 (MQ=60)
TTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATC < SRR4302540.1402676/94‑1 (MQ=60)
TTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATC > SRR4302540.8322846/1‑94 (MQ=60)
TCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCC < SRR4302540.10060605/94‑1 (MQ=60)
TCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCC < SRR4302540.6744104/94‑1 (MQ=60)
GATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCAT < SRR4302540.8226754/94‑1 (MQ=60)
GATGTAGGAGAGTGCCCCTAACACGAAATAGAGCATCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCAT > SRR4302540.6038067/1‑94 (MQ=60)
ATGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATC < SRR4302540.8988030/94‑1 (MQ=60)
TGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCT < SRR4302540.2779309/94‑1 (MQ=60)
TGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCT < SRR4302540.7249897/94‑1 (MQ=60)
TGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCT < SRR4302540.5326016/94‑1 (MQ=60)
TGTAGGAGAGTGCCCCTAACACGAAATAGAGCATCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCT > SRR4302540.5382400/1‑94 (MQ=60)
AGTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCT < SRR4302540.2779307/94‑1 (MQ=60)
GTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTC < SRR4302540.3199375/94‑1 (MQ=60)
GTAGGAGAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTC < SRR4302540.4417995/94‑1 (MQ=60)
GAGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCC < SRR4302540.3018017/94‑1 (MQ=60)
AGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCA < SRR4302540.7356391/94‑1 (MQ=60)
AGTGCCCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCA > SRR4302540.2416503/1‑94 (MQ=60)
CCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTA > SRR4302540.892092/1‑94 (MQ=60)
CCCTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTA > SRR4302540.892091/1‑94 (MQ=60)
CTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATT < SRR4302540.5591776/94‑1 (MQ=60)
CTAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATT > SRR4302540.7032696/1‑94 (MQ=60)
TAACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTT > SRR4302540.221149/1‑94 (MQ=60)
AACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTG < SRR4302540.8692321/94‑1 (MQ=60)
ACACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGA < SRR4302540.7702948/94‑1 (MQ=60)
CACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGAT < SRR4302540.8058168/94‑1 (MQ=60)
CACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGAT > SRR4302540.3083546/1‑94 (MQ=60)
CACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGAT < SRR4302540.9229282/94‑1 (MQ=60)
CACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGAT < SRR4302540.6877265/94‑1 (MQ=60)
ACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATA < SRR4302540.8342552/94‑1 (MQ=60)
ACGAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGGATTTGATA > SRR4302540.8320282/1‑94 (MQ=60)
CAAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACC < SRR4302540.1612389/94‑1 (MQ=60)
AAATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCGCCATCTCGGCCCCAGAGTATTTGATACCC > SRR4302540.6838448/1‑94 (MQ=60)
AATAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCA > SRR4302540.7040998/1‑94 (MQ=60)
TAGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGG < SRR4302540.7079481/94‑1 (MQ=60)
AGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGC < SRR4302540.8536638/94‑1 (MQ=60)
AGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGC < SRR4302540.3888450/94‑1 (MQ=60)
AGAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGC < SRR4302540.1448926/94‑1 (MQ=60)
GAGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGCA > SRR4302540.8408309/1‑94 (MQ=60)
AGCGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGCGA > SRR4302540.9863051/1‑94 (MQ=60)
CGTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGCGAAG < SRR4302540.5423441/94‑1 (MQ=60)
GTCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGCGAAGA > SRR4302540.1869698/1‑94 (MQ=60)
GTCGGAATAAAACCAATGGCGATTTGCAGATAGCAAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGCGAAGA < SRR4302540.10057073/94‑1 (MQ=60)
|
ATGATGAGTGCTGCAATAGTTTTGGTAATGGGGTCTTCATTCAGCGCTGGCCATTTCAGGATGTAGGAGAGTGCCCCTAACACGAAATAGAGCATCGGAATAAAACCAATGGCGATTTGCAGATAGCCAAATGAGATCGCTGCAAATCCCCATCTCGGCCCCAGAGTATTTGATACCCAGGCGAAGA > NC_000913/1568104‑1568290
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
