Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,572,698 |
G→A |
R177C (CGC→TGC) |
pqqL ← |
putative peptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,572,698 | 0 | G | A | 99.6%
| 957.4
/ NA
| 277 | R177C (CGC→TGC) | pqqL | putative peptidase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (128/148); minor base T (0/1); total (128/149) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 284 total aligned reads displayed.
CCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCGCCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAC > NC_000913/1572608‑1572787
|
ccGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCAcc > 1:1962138/1‑93 (MQ=255)
gTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCAt < 1:5295402/93‑1 (MQ=255)
tGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCAtt < 2:1276325/93‑1 (MQ=255)
ggCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCAttt < 2:3554156/93‑1 (MQ=255)
aCAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCa < 2:825181/93‑1 (MQ=255)
aGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCCTc > 2:622293/1‑93 (MQ=255)
gTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATcc > 1:4138834/1‑93 (MQ=255)
gTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATcc < 2:1520480/93‑1 (MQ=255)
gTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCATGAGAGGTGCAGCATTTCGCATcc > 2:2379684/1‑93 (MQ=255)
tATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCt < 2:5096664/93‑1 (MQ=255)
tATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCt > 1:4091143/1‑93 (MQ=255)
aTCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTg < 2:3373465/93‑1 (MQ=255)
tCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGa < 1:8072220/93‑1 (MQ=255)
tCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGa > 1:6352081/1‑93 (MQ=255)
tCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGa > 2:3661351/1‑93 (MQ=255)
tCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGa < 1:4292231/93‑1 (MQ=255)
ccATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGAt > 2:9679283/1‑93 (MQ=255)
ccATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGAt > 2:8444792/1‑93 (MQ=255)
cATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATg > 2:982412/1‑93 (MQ=255)
cATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATg < 1:3716382/93‑1 (MQ=255)
tCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATggg > 2:853549/1‑93 (MQ=255)
cAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGc < 2:8558828/93‑1 (MQ=255)
cAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCACTTCGCATCCTGATGGGc > 1:8989909/1‑93 (MQ=255)
aGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCa > 1:7381807/1‑93 (MQ=255)
ggCCGAGAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCAc < 2:1465680/93‑1 (MQ=255)
gCCGATAGGTTCACGGTCTAAATTACGGGAATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGAGCACCATTTCGCATCCTGATGGGCACg > 2:3501614/1‑93 (MQ=255)
gATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCa < 2:9305118/93‑1 (MQ=255)
gATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCa > 1:3970818/1‑93 (MQ=255)
aTAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCAt > 2:1633323/1‑93 (MQ=255)
tAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGCGGTGCACCATTTCGCATCCTGATGGGCACGCCAtt > 2:7562260/1‑93 (MQ=255)
ggTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACTCCATTcc < 1:6605823/93‑1 (MQ=255)
ggTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTcc > 1:2047137/1‑93 (MQ=255)
ggTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTcc > 2:6022669/1‑93 (MQ=255)
tCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCa < 1:9129297/93‑1 (MQ=255)
tCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGGGCCCCATTTCGCATCCTGATGGGCACGCCATTCCTcg > 1:2245331/1‑92 (MQ=255)
aCGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGt < 2:9524127/93‑1 (MQ=255)
cGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGGATCCTCATGGGTACGCCATTCCTCAGTa > 2:7675092/1‑93 (MQ=255)
cGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTa < 2:9212161/93‑1 (MQ=255)
cgTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTaa < 1:2766104/92‑1 (MQ=255)
gTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAt < 2:3059581/93‑1 (MQ=255)
gTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAt < 1:3659789/93‑1 (MQ=255)
tCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGGACGCCATTCCTCAGTAAtt < 2:697706/93‑1 (MQ=255)
tAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTAc < 1:5329600/93‑1 (MQ=255)
tAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTAc > 1:5820674/1‑93 (MQ=255)
aaTTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGc < 1:8200401/93‑1 (MQ=255)
aaTTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGc < 2:4471931/93‑1 (MQ=255)
tACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCAc < 2:8688527/93‑1 (MQ=255)
tACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCAc > 2:5847366/1‑93 (MQ=255)
cGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGt > 2:7922080/1‑93 (MQ=255)
ggTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTc > 1:2709320/1‑93 (MQ=255)
ggTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGAACGCCATTCCTCAGTAATTACGCCACGTTc > 2:1191794/1‑93 (MQ=255)
gTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCa < 1:2986742/93‑1 (MQ=255)
tATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCATCATTTCGCATCCTGATGGCCACGCCATTCCTCAGTAATTACGCCACGTTCAg < 2:5666836/93‑1 (MQ=255)
tATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAg < 2:250032/93‑1 (MQ=255)
aTTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGc < 1:515020/93‑1 (MQ=255)
aTTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGc > 2:1916911/1‑93 (MQ=255)
tttGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCg > 1:7660074/1‑93 (MQ=255)
ttGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGt > 1:2347887/1‑93 (MQ=255)
tGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTc < 1:2655479/93‑1 (MQ=255)
tGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTc > 1:7083018/1‑93 (MQ=255)
tGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTc > 1:7240307/1‑93 (MQ=255)
cagcagGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTAc > 2:7062931/1‑93 (MQ=255)
agcagGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACt < 1:9670871/93‑1 (MQ=255)
gcagGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACtt < 1:10030741/93‑1 (MQ=255)
ggAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGa < 2:4090948/93‑1 (MQ=255)
ggAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGa > 2:5247945/1‑93 (MQ=255)
ggAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGa > 1:8365921/1‑93 (MQ=255)
gAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAg < 2:4052208/93‑1 (MQ=255)
aaGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGtt > 1:3168419/1‑93 (MQ=255)
aaGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGtt < 1:1578769/93‑1 (MQ=255)
aGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGttt < 2:7412675/93‑1 (MQ=255)
aGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGttt < 1:177701/93‑1 (MQ=255)
aGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGttt > 1:5683622/1‑93 (MQ=255)
gggCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGtttt < 2:4306548/93‑1 (MQ=255)
cggcgCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCa < 1:1283440/93‑1 (MQ=255)
cggcgCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCa < 1:9305568/93‑1 (MQ=255)
gcgcgcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCaaa > 1:1661239/1‑93 (MQ=255)
gcgcgcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACACCACGTTCAGCGTCTACTTCGAGTTTTTCaaa > 1:1179048/1‑93 (MQ=255)
cgcgcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAg < 1:4225317/93‑1 (MQ=255)
cgcgcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAg < 2:6065460/93‑1 (MQ=255)
gcgcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAgg < 1:3448881/93‑1 (MQ=255)
gcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGtt < 2:6164735/93‑1 (MQ=255)
gcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGtt > 1:9743702/1‑93 (MQ=255)
gcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGtt < 2:3112875/93‑1 (MQ=255)
gcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGtt < 1:4591171/93‑1 (MQ=255)
ccTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTg > 1:3894791/1‑93 (MQ=255)
ccTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTg > 1:4784564/1‑93 (MQ=255)
cTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGc < 2:2260981/93‑1 (MQ=255)
tGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCg > 1:1872573/1‑93 (MQ=255)
gagaGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCgg < 2:8117917/93‑1 (MQ=255)
gagaGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCgg > 1:9385724/1‑93 (MQ=255)
agagGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGc < 1:9424815/93‑1 (MQ=255)
ggTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCAtt > 1:2537169/1‑93 (MQ=255)
ggTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCAtt < 2:4919672/93‑1 (MQ=255)
gTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTa < 1:4996144/93‑1 (MQ=255)
gTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTa < 1:788351/93‑1 (MQ=255)
tGCACCATTTTGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAc > 2:6356796/1‑93 (MQ=255)
tGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTaa > 2:2122859/1‑92 (MQ=255)
tGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAc < 1:4391575/93‑1 (MQ=255)
tGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAc > 2:6474034/1‑93 (MQ=255)
|
CCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCGCCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAC > NC_000913/1572608‑1572787
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGACCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCGCCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCCA > NC_000913/1572605‑1572791
|
TGACCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCA > SRR4302540.778352/1‑94 (MQ=60)
ACCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACC > SRR4302540.1983455/1‑94 (MQ=60)
ACCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACC < SRR4302540.3182209/94‑1 (MQ=60)
GTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATT < SRR4302540.5353315/94‑1 (MQ=60)
TGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTT > SRR4302540.1665531/1‑94 (MQ=60)
CGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGC < SRR4302540.6040397/94‑1 (MQ=60)
GACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCA > SRR4302540.3765539/1‑94 (MQ=60)
ACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCAT > SRR4302540.1878373/1‑94 (MQ=60)
ACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCAT < SRR4302540.2199196/94‑1 (MQ=60)
cagtgtccgcCAGGCCGATAGCTGCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATC < SRR4302540.4611548/84‑1 (MQ=60)
AGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCC > SRR4302540.3262125/1‑94 (MQ=60)
AGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCC > SRR4302540.4183619/1‑94 (MQ=60)
AGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCC > SRR4302540.4183620/1‑94 (MQ=60)
AGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCC > SRR4302540.6536158/1‑94 (MQ=60)
GTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCT > SRR4302540.4135280/1‑94 (MQ=60)
GTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCT > SRR4302540.171384/1‑94 (MQ=60)
GTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCT > SRR4302540.8187289/1‑94 (MQ=60)
TATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTG < SRR4302540.9412852/94‑1 (MQ=60)
ATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGA > SRR4302540.6422821/1‑94 (MQ=60)
ATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGA < SRR4302540.2106210/94‑1 (MQ=60)
ATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGA > SRR4302540.292237/1‑94 (MQ=60)
TCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGAT < SRR4302540.4292421/94‑1 (MQ=60)
TCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGAT < SRR4302540.9331997/94‑1 (MQ=60)
TCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGAT > SRR4302540.7422135/1‑94 (MQ=60)
TCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGAT < SRR4302540.8165882/94‑1 (MQ=60)
TCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGAT < SRR4302540.4338929/94‑1 (MQ=60)
TCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGAT < SRR4302540.1137084/94‑1 (MQ=60)
CCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATG < SRR4302540.6526368/94‑1 (MQ=60)
CATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGG < SRR4302540.3756932/94‑1 (MQ=60)
CATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGG > SRR4302540.8266873/1‑94 (MQ=60)
CATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGG < SRR4302540.7253298/94‑1 (MQ=60)
CATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATAG > SRR4302540.1287517/1‑94 (MQ=60)
ATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGG < SRR4302540.2345640/94‑1 (MQ=60)
ATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGG > SRR4302540.3979571/1‑94 (MQ=60)
ATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGG > SRR4302540.5765919/1‑94 (MQ=60)
ATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGG > SRR4302540.9504950/1‑94 (MQ=60)
ATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGG < SRR4302540.1470882/94‑1 (MQ=60)
TCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGC < SRR4302540.2398831/94‑1 (MQ=60)
TCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCACTTCGCATCCTGATGGGC > SRR4302540.9097522/1‑94 (MQ=60)
CAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCA > SRR4302540.7464062/1‑94 (MQ=60)
AGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCAC > SRR4302540.5378537/1‑94 (MQ=60)
AGGCCGATAGGTTCACGGTCTAAATTACGGGTAGTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCAC < SRR4302540.8365686/94‑1 (MQ=60)
CCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCC > SRR4302540.8154379/1‑94 (MQ=60)
CGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCA > SRR4302540.9610093/1‑94 (MQ=60)
CGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCA > SRR4302540.4013622/1‑94 (MQ=60)
CGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCA > SRR4302540.4329982/1‑94 (MQ=60)
CGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCA > SRR4302540.548734/1‑94 (MQ=60)
ATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATT < SRR4302540.5272689/94‑1 (MQ=60)
TAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTC > SRR4302540.7569789/1‑94 (MQ=60)
AGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCC < SRR4302540.153369/94‑1 (MQ=60)
AGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCC > SRR4302540.2069191/1‑94 (MQ=60)
GGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACTCCATTCCT < SRR4302540.6678970/94‑1 (MQ=60)
GTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTC > SRR4302540.4164756/1‑94 (MQ=60)
TTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCA > SRR4302540.9477487/1‑94 (MQ=60)
TTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGGGCCCCATTTCGCATCCTGATGGGCACGCCATTCCTCG > SRR4302540.2269456/1‑94 (MQ=60)
TCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAG < SRR4302540.9239023/94‑1 (MQ=60)
CACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGT > SRR4302540.3151755/1‑94 (MQ=60)
GGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAT > SRR4302540.165817/1‑94 (MQ=60)
GGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAT < SRR4302540.2795989/94‑1 (MQ=60)
GGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAT > SRR4302540.6074342/1‑94 (MQ=60)
CGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAT < SRR4302540.2795990/94‑1 (MQ=60)
GTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATT < SRR4302540.3699856/94‑1 (MQ=60)
GTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATT < SRR4302540.5135761/94‑1 (MQ=60)
TCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTTTGAGGTGCACCAATTCGCATCCTGATGGTCACGCCATTCCTCAGCTATTA > SRR4302540.9077422/1‑94 (MQ=60)
CTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTAC > SRR4302540.5885008/1‑94 (MQ=60)
TAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACG < SRR4302540.5387984/94‑1 (MQ=60)
AATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCC < SRR4302540.8295696/94‑1 (MQ=60)
atatGGGTATTTTCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCAC < SRR4302540.2714866/90‑1 (MQ=60)
TACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACG < SRR4302540.2308140/94‑1 (MQ=60)
GGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTC > SRR4302540.9533296/1‑94 (MQ=60)
GGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTC > SRR4302540.2738540/1‑94 (MQ=60)
GGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTC > SRR4302540.1823562/1‑94 (MQ=60)
GGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCA < SRR4302540.5859691/94‑1 (MQ=60)
GTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAG < SRR4302540.3019690/94‑1 (MQ=60)
GTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAG > SRR4302540.3815030/1‑94 (MQ=60)
ATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCG < SRR4302540.520546/94‑1 (MQ=60)
ATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCG > SRR4302540.7747554/1‑94 (MQ=60)
ATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCG < SRR4302540.2623494/94‑1 (MQ=60)
ATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCG > SRR4302540.7746332/1‑94 (MQ=60)
TTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGT > SRR4302540.2373174/1‑94 (MQ=60)
TTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTC > SRR4302540.7161850/1‑94 (MQ=60)
TTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTC > SRR4302540.7321065/1‑94 (MQ=60)
TTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTC > SRR4302540.1256516/1‑94 (MQ=60)
TGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCT > SRR4302540.1982356/1‑94 (MQ=60)
TGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCT < SRR4302540.2684299/94‑1 (MQ=60)
TGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCT > SRR4302540.4672002/1‑94 (MQ=60)
TGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCT < SRR4302540.2047780/94‑1 (MQ=60)
GCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTA < SRR4302540.4104936/94‑1 (MQ=60)
GCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTA > SRR4302540.28729/1‑94 (MQ=60)
CAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACT < SRR4302540.3524582/94‑1 (MQ=60)
CAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACT > SRR4302540.374689/1‑94 (MQ=60)
AGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTT < SRR4302540.9784681/94‑1 (MQ=60)
AGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTT < SRR4302540.9784682/94‑1 (MQ=60)
AGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTT > SRR4302540.10064097/1‑94 (MQ=60)
AGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTT > SRR4302540.5344574/1‑94 (MQ=60)
GCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTC < SRR4302540.10147425/94‑1 (MQ=60)
CAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCG < SRR4302540.3082792/94‑1 (MQ=60)
AGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGA < SRR4302540.2749361/94‑1 (MQ=60)
AGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGA > SRR4302540.8463002/1‑94 (MQ=60)
AGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGA < SRR4302540.7009544/94‑1 (MQ=60)
AGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGA > SRR4302540.4013377/1‑94 (MQ=60)
AGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGA > SRR4302540.7783695/1‑94 (MQ=60)
GGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAG < SRR4302540.3544737/94‑1 (MQ=60)
AAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTT > SRR4302540.3202866/1‑94 (MQ=60)
AAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTT > SRR4302540.4377315/1‑94 (MQ=60)
AAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTT < SRR4302540.1999911/94‑1 (MQ=60)
AAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTT < SRR4302540.1596028/94‑1 (MQ=60)
AAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTT > SRR4302540.5746197/1‑94 (MQ=60)
AAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTT > SRR4302540.6710404/1‑94 (MQ=60)
AAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTT < SRR4302540.3336435/94‑1 (MQ=60)
AGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTT < SRR4302540.2463890/94‑1 (MQ=60)
AGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTT < SRR4302540.179465/94‑1 (MQ=60)
GGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTT < SRR4302540.5088580/94‑1 (MQ=60)
GGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTC < SRR4302540.8648740/94‑1 (MQ=60)
GGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTC < SRR4302540.760631/94‑1 (MQ=60)
CGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAA < SRR4302540.942921/94‑1 (MQ=60)
CGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAA < SRR4302540.1296669/94‑1 (MQ=60)
CGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAA < SRR4302540.9416699/94‑1 (MQ=60)
GGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAA > SRR4302540.1679332/1‑94 (MQ=60)
GGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACACCACGTTCAGCGTCTACTTCGAGTTTTTCAAA > SRR4302540.1191230/1‑94 (MQ=60)
CGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGG < SRR4302540.1720829/94‑1 (MQ=60)
CGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGG < SRR4302540.4271314/94‑1 (MQ=60)
GCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGT < SRR4302540.3486397/94‑1 (MQ=60)
GCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGT > SRR4302540.9199290/1‑94 (MQ=60)
CGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTT > SRR4302540.9858062/1‑94 (MQ=60)
CGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTT < SRR4302540.2677335/94‑1 (MQ=60)
GCCTGAGAGGTTCCCCATTTCGCATTCTGATGTGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTG < SRR4302540.5645249/94‑1 (MQ=60)
GCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTG > SRR4302540.3937067/1‑94 (MQ=60)
GCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTG > SRR4302540.4523342/1‑94 (MQ=60)
GCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTG < SRR4302540.4640588/94‑1 (MQ=60)
GCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTG < SRR4302540.9125228/94‑1 (MQ=60)
GCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTG > SRR4302540.4835712/1‑94 (MQ=60)
CCTGAGAGGTGCACCATTTCGCATCCTGATGGGTACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGC < SRR4302540.9796411/94‑1 (MQ=60)
CCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGC > SRR4302540.4756341/1‑94 (MQ=60)
CTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCG > SRR4302540.1893090/1‑94 (MQ=60)
TGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGG > SRR4302540.5018218/1‑94 (MQ=60)
TGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGG > SRR4302540.9497436/1‑94 (MQ=60)
GAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGC < SRR4302540.4074807/94‑1 (MQ=60)
AGAGGTTCGCCATTTCGCATCCGGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCA < SRR4302540.8040321/94‑1 (MQ=60)
AGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCA < SRR4302540.9536810/94‑1 (MQ=60)
GAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCAT > SRR4302540.4209682/1‑94 (MQ=60)
GAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCAACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCAT < SRR4302540.4170402/94‑1 (MQ=60)
AGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATT > SRR4302540.2564530/1‑94 (MQ=60)
GGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTA < SRR4302540.7453508/94‑1 (MQ=60)
GTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAC > SRR4302540.4943461/1‑94 (MQ=60)
GTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAC < SRR4302540.796734/94‑1 (MQ=60)
GTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAC < SRR4302540.5050231/94‑1 (MQ=60)
TGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACT < SRR4302540.4439232/94‑1 (MQ=60)
TGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACT > SRR4302540.9073427/1‑94 (MQ=60)
GCACCATTTCGCATCCTGGTGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCTTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTC < SRR4302540.7034487/94‑1 (MQ=60)
GCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTC < SRR4302540.7034483/94‑1 (MQ=60)
CACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCC < SRR4302540.6119559/94‑1 (MQ=60)
ACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCCA < SRR4302540.4180125/94‑1 (MQ=60)
ACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCCA > SRR4302540.4621745/1‑94 (MQ=60)
ACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCCA > SRR4302540.8928925/1‑94 (MQ=60)
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TGACCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCGCCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCCA > NC_000913/1572605‑1572791
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
