Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,572,698 |
G→A |
R177C (CGC→TGC) |
pqqL ← |
putative peptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,572,698 | 0 | G | A | 99.5%
| 699.9
/ NA
| 195 | R177C (CGC→TGC) | pqqL | putative peptidase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (95/98); total (95/100) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 199 total aligned reads displayed.
CCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCGCCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAC > NC_000913/1572608‑1572787
|
ccGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCAcc > 2:3621409/1‑93 (MQ=255)
gTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCAt > 2:6022446/1‑93 (MQ=255)
gTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCAt > 1:759327/1‑93 (MQ=255)
gTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGAGGCGCGCCTGAGAGGTGCACCAt > 1:2051990/1‑93 (MQ=255)
ggCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCCCCAttt < 1:5721932/93‑1 (MQ=255)
ggCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCAttt < 2:901079/93‑1 (MQ=255)
ggCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCAttt > 2:5770106/1‑93 (MQ=255)
ggCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCAttt < 1:5908497/93‑1 (MQ=255)
gCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTc < 2:368655/93‑1 (MQ=255)
gACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGc > 1:2472079/1‑93 (MQ=255)
aCAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCTAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCa > 2:4344758/1‑93 (MQ=255)
aCAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCa > 1:643374/1‑93 (MQ=255)
gTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATcc < 2:4144411/93‑1 (MQ=255)
ccATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGAt < 1:859909/93‑1 (MQ=255)
cATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATg < 1:1086844/93‑1 (MQ=255)
cATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATg < 1:2130327/93‑1 (MQ=255)
aTCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATgg < 1:4875053/93‑1 (MQ=255)
tCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGATGTGCACCATTTCGCATCCTGATgtg > 2:5223497/1‑91 (MQ=255)
tCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATggg < 2:3490479/93‑1 (MQ=255)
cAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGc < 2:5588568/93‑1 (MQ=255)
aGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCa < 2:4537422/93‑1 (MQ=255)
aGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCa > 1:4679554/1‑93 (MQ=255)
ggCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCAc < 1:2774216/93‑1 (MQ=255)
ggCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCAc < 2:2304261/93‑1 (MQ=255)
cGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTAGCATCCTGATGGGCACGcc > 2:2412920/1‑93 (MQ=255)
gATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCa > 1:187759/1‑93 (MQ=255)
gATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCa > 1:41231/1‑93 (MQ=255)
gATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCa > 1:2099905/1‑93 (MQ=255)
tAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCAtt > 1:501485/1‑93 (MQ=255)
tAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCAtt < 1:2379630/93‑1 (MQ=255)
ggTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTcc > 2:4034010/1‑93 (MQ=255)
ttCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTc < 2:204911/93‑1 (MQ=255)
ttCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTc < 1:5277090/93‑1 (MQ=255)
ttCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTc > 1:1601628/1‑93 (MQ=255)
ttCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTc > 2:2916249/1‑93 (MQ=255)
tCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCa < 1:624868/93‑1 (MQ=255)
tCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCa < 2:3256554/93‑1 (MQ=255)
cACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAg > 1:3657120/1‑93 (MQ=255)
cACGGTCTAAATGACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCGCCATTTCGCATCCTGATGGGCACGCCATTCCTCAg < 2:1458479/93‑1 (MQ=255)
cGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTa > 2:1563878/1‑93 (MQ=255)
ggTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTaa < 1:216245/93‑1 (MQ=255)
gTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAt < 1:239620/93‑1 (MQ=255)
gTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAt > 1:4819102/1‑93 (MQ=255)
cTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTa < 1:4027002/93‑1 (MQ=255)
cTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTa < 2:629142/93‑1 (MQ=255)
tAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTAc > 2:5119567/1‑93 (MQ=255)
aaaTTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACg < 1:1064965/93‑1 (MQ=255)
aaTTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGCAATTACGc < 2:6162598/93‑1 (MQ=255)
aTTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGcc < 2:594967/93‑1 (MQ=255)
ttACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCa < 2:1271399/93‑1 (MQ=255)
ttACGGGTATGGGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGGGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAGTACGCCa < 2:6254891/93‑1 (MQ=255)
cGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGt > 1:4197440/1‑93 (MQ=255)
ggTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTc < 2:1018711/93‑1 (MQ=255)
ggTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTc > 2:3871874/1‑93 (MQ=255)
ggTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTc > 1:3476817/1‑93 (MQ=255)
tATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAg < 1:6185370/93‑1 (MQ=255)
tttGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCg > 1:1743365/1‑93 (MQ=255)
tGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTc < 2:5003369/93‑1 (MQ=255)
gCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCt < 2:2127174/93‑1 (MQ=255)
gCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCt < 2:2008104/93‑1 (MQ=255)
gCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCt > 2:6047211/1‑93 (MQ=255)
gCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCt < 2:4926757/93‑1 (MQ=255)
ccAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTa > 1:395479/1‑93 (MQ=255)
cagcagGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTAc < 2:4278022/93‑1 (MQ=255)
cagcagGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTAc < 1:2975204/93‑1 (MQ=255)
agcagGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACt > 1:5690552/1‑93 (MQ=255)
agcagGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACt < 1:875651/93‑1 (MQ=255)
gcagGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACtt < 1:3533762/93‑1 (MQ=255)
gcagGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACtt < 1:3738663/93‑1 (MQ=255)
gcagGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACtt < 1:1322946/93‑1 (MQ=255)
ggAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCTCGTTCAGCGTCTACTTCGa < 2:6118635/93‑1 (MQ=255)
ggAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGa < 2:2566435/93‑1 (MQ=255)
ggAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGa > 1:2436813/1‑93 (MQ=255)
ggAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGa > 2:2332720/1‑93 (MQ=255)
ggAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGa > 1:5864814/1‑93 (MQ=255)
gAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAg > 2:3083235/1‑93 (MQ=255)
aaaGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGt > 2:6232677/1‑93 (MQ=255)
aaaGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGt > 2:561152/1‑93 (MQ=255)
aaaGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGt < 2:3399467/93‑1 (MQ=255)
aGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGttt < 2:3551380/93‑1 (MQ=255)
aGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGttt > 2:2764237/1‑93 (MQ=255)
aGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGttt > 2:4683518/1‑93 (MQ=255)
aggcggcGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGtttt < 2:2481421/92‑1 (MQ=255)
gcggcgCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTc < 2:1065577/93‑1 (MQ=255)
cggcgCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCa > 2:1724565/1‑93 (MQ=255)
gcgcgcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCaaa < 2:3814929/93‑1 (MQ=255)
cgcgcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAg < 1:2224929/93‑1 (MQ=255)
gcgcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAgg > 1:5547862/1‑93 (MQ=255)
gcgcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACACCACGTTCAGCGTCTACTTCGAGTTTTTCAAAgg > 2:2818801/1‑93 (MQ=255)
gcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGtt > 2:3958605/1‑93 (MQ=255)
gcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGtt < 2:3169072/93‑1 (MQ=255)
gcCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGtt < 2:2976289/93‑1 (MQ=255)
ccTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTg < 2:5744248/93‑1 (MQ=255)
cTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGc < 2:5823508/93‑1 (MQ=255)
tGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCg < 2:4231746/93‑1 (MQ=255)
gagGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCa > 1:2611977/1‑93 (MQ=255)
agGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCAt < 1:2090797/93‑1 (MQ=255)
gTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTa < 1:3241937/93‑1 (MQ=255)
gTGCACCATTTCGCATCCTGATGGGAACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTa < 1:6063715/93‑1 (MQ=255)
tGCACCATTGCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAc < 2:4439441/93‑1 (MQ=255)
|
CCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCGCCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAC > NC_000913/1572608‑1572787
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCGCCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCCA > NC_000913/1572606‑1572791
|
GACCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCAC > SRR4302533.3225286/1‑94 (MQ=60)
ACCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACC > SRR4302533.2882498/1‑94 (MQ=60)
CGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCAT > SRR4302533.763797/1‑94 (MQ=60)
CGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGAGGCGCGCCTGAGAGGTGCACCAT > SRR4302533.2064653/1‑94 (MQ=60)
GGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCCCCATTTC < SRR4302533.5756481/94‑1 (MQ=60)
GGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTC > SRR4302533.2417281/1‑94 (MQ=60)
GGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTC < SRR4302533.5944190/94‑1 (MQ=60)
CGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGC > SRR4302533.2487323/1‑94 (MQ=60)
GACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCA > SRR4302533.647159/1‑94 (MQ=60)
GACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCA > SRR4302533.3363998/1‑94 (MQ=60)
AGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCC > SRR4302533.5594854/1‑94 (MQ=60)
TATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTG > SRR4302533.3667642/1‑94 (MQ=60)
TATCCATCAGGCCGATAGGGTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTG < SRR4302533.1288111/94‑1 (MQ=60)
ATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCACGCCTGAGAGGTGCACCATTTCGCATCCTGA > SRR4302533.5907657/1‑94 (MQ=60)
CCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATG > SRR4302533.4184396/1‑94 (MQ=60)
CCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATG < SRR4302533.864948/94‑1 (MQ=60)
CCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATGTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATG < SRR4302533.35396/94‑1 (MQ=60)
CATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGG < SRR4302533.1093249/94‑1 (MQ=60)
CATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGG > SRR4302533.6041677/1‑94 (MQ=60)
CATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGG < SRR4302533.2143462/94‑1 (MQ=60)
ATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGG < SRR4302533.4904590/94‑1 (MQ=60)
ATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGG < SRR4302533.2082818/94‑1 (MQ=60)
CAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCA > SRR4302533.4707915/1‑94 (MQ=60)
AGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCAC < SRR4302533.875667/94‑1 (MQ=60)
GGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACG < SRR4302533.3177066/94‑1 (MQ=60)
GGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACG < SRR4302533.2791253/94‑1 (MQ=60)
GCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGC > SRR4302533.5429164/1‑94 (MQ=60)
CCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCC > SRR4302533.4057826/1‑94 (MQ=60)
CCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCC > SRR4302533.2561257/1‑94 (MQ=60)
CGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCA > SRR4302533.41513/1‑94 (MQ=60)
CGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCA > SRR4302533.4759030/1‑94 (MQ=60)
CGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCA > SRR4302533.2112858/1‑94 (MQ=60)
CGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCA > SRR4302533.188927/1‑94 (MQ=60)
ATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATT > SRR4302533.504467/1‑94 (MQ=60)
ATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATT < SRR4302533.3755524/94‑1 (MQ=60)
ATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATT < SRR4302533.5733335/94‑1 (MQ=60)
TAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTC < SRR4302533.2394352/94‑1 (MQ=60)
AGGTTCACGGGCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCC > SRR4302533.2209965/1‑94 (MQ=60)
GGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCT < SRR4302533.2726885/94‑1 (MQ=60)
GTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTC > SRR4302533.1611324/1‑94 (MQ=60)
TTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCA < SRR4302533.5308725/94‑1 (MQ=60)
TCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAG < SRR4302533.628536/94‑1 (MQ=60)
TCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAG > SRR4302533.3679605/1‑94 (MQ=60)
CACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGT < SRR4302533.4899016/94‑1 (MQ=60)
ACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTA < SRR4302533.656670/94‑1 (MQ=60)
GGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAT < SRR4302533.1656321/94‑1 (MQ=60)
GGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAT > SRR4302533.4848308/1‑94 (MQ=60)
GGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAAT < SRR4302533.217603/94‑1 (MQ=60)
GTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATT < SRR4302533.241102/94‑1 (MQ=60)
CTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTAC < SRR4302533.4051516/94‑1 (MQ=60)
AAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGC < SRR4302533.1071219/94‑1 (MQ=60)
AATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCC > SRR4302533.5273971/1‑94 (MQ=60)
ACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGT > SRR4302533.4222849/1‑94 (MQ=60)
CGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTT < SRR4302533.4298969/94‑1 (MQ=60)
GGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTC > SRR4302533.3498272/1‑94 (MQ=60)
TATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGC < SRR4302533.6222503/94‑1 (MQ=60)
ATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCG > SRR4302533.2169360/1‑94 (MQ=60)
ATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCG > SRR4302533.1753965/1‑94 (MQ=60)
ATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCG > SRR4302533.6206136/1‑94 (MQ=60)
ATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCG < SRR4302533.1829919/94‑1 (MQ=60)
ATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCG < SRR4302533.1890148/94‑1 (MQ=60)
ATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGNGCACCATTTCGCATCNTGATGGNCACGNCANTCNNNNNNAATTANGCCANNNTNANNG > SRR4302533.3171060/1‑94 (MQ=60)
TTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGaaattcgcccagttccagcgc > SRR4302533.2982686/1‑73 (MQ=60)
TTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGC > SRR4302533.3914175/1‑94 (MQ=60)
TGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCT < SRR4302533.2114647/94‑1 (MQ=60)
GCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTA > SRR4302533.397875/1‑94 (MQ=60)
CAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACT < SRR4302533.2993408/94‑1 (MQ=60)
CAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACT > SRR4302533.5724920/1‑94 (MQ=60)
AGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTT < SRR4302533.880792/94‑1 (MQ=60)
GCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTC < SRR4302533.3761591/94‑1 (MQ=60)
GCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTC < SRR4302533.3555537/94‑1 (MQ=60)
GCAGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTC < SRR4302533.1330883/94‑1 (MQ=60)
AGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGA > SRR4302533.5032972/1‑94 (MQ=60)
AGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGA > SRR4302533.2451859/1‑94 (MQ=60)
AGGAAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGA > SRR4302533.5900270/1‑94 (MQ=60)
AAAGGGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTT > SRR4302533.2457977/1‑94 (MQ=60)
GGCGGCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTC < SRR4302533.78350/94‑1 (MQ=60)
GCGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAG < SRR4302533.2108327/94‑1 (MQ=60)
CGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGG > SRR4302533.5581367/1‑94 (MQ=60)
CGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGG > SRR4302533.2374898/1‑94 (MQ=60)
CGCGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGG < SRR4302533.2238667/94‑1 (MQ=60)
CGCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTT < SRR4302533.6279720/94‑1 (MQ=60)
GCCTGAGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTG < SRR4302533.1571665/94‑1 (MQ=60)
AGAGGTGCACCATTTCGCATCCTGATGGGCACGCCTTTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCA < SRR4302533.639456/94‑1 (MQ=60)
AGAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCA > SRR4302533.2628009/1‑94 (MQ=60)
GAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCAT > SRR4302533.240378/1‑94 (MQ=60)
GAGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCAT > SRR4302533.5798689/1‑94 (MQ=60)
AGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATT > SRR4302533.4038424/1‑94 (MQ=60)
AGGTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATT < SRR4302533.2103674/94‑1 (MQ=60)
GTGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAC < SRR4302533.3261918/94‑1 (MQ=60)
GTGCACCATTTCGCATCCTGATGGGAACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTAC < SRR4302533.6100422/94‑1 (MQ=60)
TGCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACT > SRR4302533.3974976/1‑94 (MQ=60)
GCACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTC > SRR4302533.1261911/1‑94 (MQ=60)
CACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCC < SRR4302533.6057415/94‑1 (MQ=60)
CACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCC > SRR4302533.2711917/1‑94 (MQ=60)
ACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCCA > SRR4302533.1287898/1‑94 (MQ=60)
ACCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCCA < SRR4302533.5820202/94‑1 (MQ=60)
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GACCGTGGCGACAGTATCCATCAGGCCGATAGGTTCACGGTCTAAATTACGGGTATTTGCCAGCAGGAAAGGGCGGCGCGCCTGAGAGGTGCGCCATTTCGCATCCTGATGGGCACGCCATTCCTCAGTAATTACGCCACGTTCAGCGTCTACTTCGAGTTTTTCAAAGGTTGCGGCATTACTCCA > NC_000913/1572606‑1572791
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
