Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,662,715 |
A→G |
T65T (ACA→ACG) |
b1591 → |
putative oxidoreductase component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,662,715 | 0 | A | G | 100.0%
| 701.9
/ NA
| 215 | T65T (ACA→ACG) | b1591 | putative oxidoreductase component |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (105/110); total (105/110) |
Only 100 of 228 total aligned reads displayed.
TCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACACAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGC > NC_000913/1662625‑1662803
|
tctGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGAcgca < 1:711090/93‑1 (MQ=255)
ggTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAgtg > 1:1422830/1‑93 (MQ=255)
ggTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAgtg < 2:6504606/93‑1 (MQ=255)
ggTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAgtg < 2:2089589/93‑1 (MQ=255)
gTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAgtgt < 1:4998154/93‑1 (MQ=255)
ttGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGtgtg < 1:650125/93‑1 (MQ=255)
tGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGa < 2:8533944/93‑1 (MQ=255)
ggTACTCACCAGTGACGGCTGGGAAACTCAGTTGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAaga < 1:9278840/93‑1 (MQ=255)
ggTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAaga < 1:8738782/93‑1 (MQ=255)
ggTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAaga < 1:6789434/93‑1 (MQ=255)
ggTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAaga > 2:8745347/1‑93 (MQ=255)
ggTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAaga > 2:6364799/1‑93 (MQ=255)
gTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAagag > 1:6233425/1‑93 (MQ=255)
tACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAgaga < 2:2699164/93‑1 (MQ=255)
aCTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGAc < 2:9731363/93‑1 (MQ=255)
cTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACt < 1:810835/93‑1 (MQ=255)
tCACCAGTGACGGCTGGGAAGCTCAGTGGCCTCTACCAGGAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTc < 1:7681214/93‑1 (MQ=255)
tCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTc > 2:932960/1‑93 (MQ=255)
tCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTc < 2:7634674/93‑1 (MQ=255)
tCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTc > 2:2009641/1‑93 (MQ=255)
tCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTc < 1:4009691/93‑1 (MQ=255)
cACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCa > 1:2368256/1‑93 (MQ=255)
aCCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCAc > 2:3204153/1‑93 (MQ=255)
aCCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCAc < 1:8962389/93‑1 (MQ=255)
aCCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCAc > 1:8366023/1‑93 (MQ=255)
ccAGTGACGGCTGGGAACCTCAGTGGCCTCTACCAGCACCGTCATTAGCGCCGCTGGTGCCGGCTTTTCAGACGCAGTGTGAAGAGACTCACg < 1:1048854/93‑1 (MQ=255)
ccAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACg > 1:4224344/1‑93 (MQ=255)
ccAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACg > 1:7651448/1‑93 (MQ=255)
ccAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGAGCCGCCGGTGACGGCTTTTGCGACGCACTGTGAAGAGCCTCAcc > 2:1883789/1‑92 (MQ=255)
aGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGcc > 1:2174865/1‑93 (MQ=255)
gTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGccc < 2:9048680/93‑1 (MQ=255)
tGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCa < 1:9808478/93‑1 (MQ=255)
tGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCa < 1:739613/93‑1 (MQ=255)
tGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCa > 2:5899620/1‑93 (MQ=255)
tGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCa > 2:3928315/1‑93 (MQ=255)
gACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAg < 1:947740/93‑1 (MQ=255)
ggCTGGGAAACTCAGTGGCTTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGcc < 2:1291277/93‑1 (MQ=255)
ggCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGcc < 1:8862187/93‑1 (MQ=255)
gCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCt < 2:3825636/93‑1 (MQ=255)
tGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTgg < 1:1268258/93‑1 (MQ=255)
tGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTgg < 1:5041682/93‑1 (MQ=255)
gggAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGc > 1:680274/1‑93 (MQ=255)
gggAAACTCAGTGGAATCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGc > 2:4477682/1‑93 (MQ=255)
ggAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCa < 2:7894643/93‑1 (MQ=255)
gAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAg < 1:3773294/93‑1 (MQ=255)
aaaCTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGc < 1:591221/93‑1 (MQ=255)
aaaCTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGc < 1:3293270/93‑1 (MQ=255)
agcTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCg < 2:5497031/91‑1 (MQ=255)
aCTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCgt > 1:5753925/1‑93 (MQ=255)
aCTCAGTGGCCTCTACCAGAAGCGACATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCACCgt > 2:2874792/1‑93 (MQ=255)
cTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCgtt < 1:7782595/93‑1 (MQ=255)
cTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCgtt < 2:1426731/93‑1 (MQ=255)
cTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCgtt < 2:1426733/93‑1 (MQ=255)
cTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGGGAAGAGACTCACGCCCAGGCCTGGAAGCgtt > 2:4031681/1‑93 (MQ=255)
cAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCgtttg > 1:4030375/1‑93 (MQ=255)
gTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCgtttgtt < 2:2303479/93‑1 (MQ=255)
gTGGCCTCTACCAGAAGCGGCATTAGCGCCGCTAGTGACGGCTTTTCACACGCAGCGGGAAGAGACTCATTCGCAGGCCTACAAGCgtttgat > 2:3443751/1‑91 (MQ=255)
tGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCgtttgttt > 2:5844718/1‑93 (MQ=255)
tGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAACgtttgttt < 2:1024287/93‑1 (MQ=255)
ccTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTc > 2:7209998/1‑93 (MQ=255)
ctctACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCg > 1:5429846/1‑93 (MQ=255)
ctctACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCg > 1:368260/1‑93 (MQ=255)
aCCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCggaca > 1:3080995/1‑90 (MQ=255)
ccAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCg < 2:6066839/93‑1 (MQ=255)
cAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGt > 2:10013553/1‑93 (MQ=255)
cAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGt > 1:9299161/1‑93 (MQ=255)
aGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTg < 1:673540/93‑1 (MQ=255)
aGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTg < 2:6470244/93‑1 (MQ=255)
aGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTg < 2:6571519/93‑1 (MQ=255)
aGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTg > 2:3568367/1‑93 (MQ=255)
aaGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCACGTggg > 1:1182049/1‑93 (MQ=255)
gCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCa < 1:7857861/93‑1 (MQ=255)
gTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACt < 2:8043472/93‑1 (MQ=255)
tCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTg > 2:9130403/1‑93 (MQ=255)
cATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCGGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCAGTGc > 1:4930870/1‑93 (MQ=255)
cATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGc < 1:1527754/93‑1 (MQ=255)
cATTAGCGCCGCTGGTGACGGCTTTTAAGACGCAGTGTGAAGAGACTCACGCCCCGGCCTGGCAGCGTTTGTTTGTCGGCCCGCGGGCACTGc > 2:4983043/1‑93 (MQ=255)
ttAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCg > 2:1775702/1‑93 (MQ=255)
gcgcCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGtct > 1:7346288/1‑93 (MQ=255)
gccgcTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTcc > 1:7593300/1‑93 (MQ=255)
gcTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTccgcc < 1:6985757/93‑1 (MQ=255)
gcTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTccgcc > 1:3111755/1‑93 (MQ=255)
cTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTccgccg > 2:9373065/1‑93 (MQ=255)
tGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGt > 2:6303102/1‑93 (MQ=255)
tGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGt < 2:8381293/93‑1 (MQ=255)
ggTGAGGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTg < 2:6209484/93‑1 (MQ=255)
ggTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTg > 2:5926423/1‑93 (MQ=255)
tGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTggg < 2:568670/93‑1 (MQ=255)
gACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCgggggg > 2:3245855/1‑93 (MQ=255)
gACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTgggg > 2:3719583/1‑93 (MQ=255)
gACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTgggg > 2:5350563/1‑93 (MQ=255)
aCGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGGCGGCCCGTGGGCACTGCCGTCTCCGCCGTggggg < 1:2653656/93‑1 (MQ=255)
ggCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGggtc < 1:341737/93‑1 (MQ=255)
ggCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGggtc < 2:4829594/93‑1 (MQ=255)
ggCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGggtc < 2:9001691/93‑1 (MQ=255)
gCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGggtcg > 2:6102020/1‑93 (MQ=255)
tttCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGggtcggtc > 1:1051389/1‑93 (MQ=255)
ttCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTct < 1:9339593/93‑1 (MQ=255)
tCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTctg > 2:823916/1‑93 (MQ=255)
cAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTctgg < 1:9588758/93‑1 (MQ=255)
|
TCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACACAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGC > NC_000913/1662625‑1662803
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACACAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGCTGGAT > NC_000913/1662622‑1662808
|
ACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACG > SRR4302540.1315997/1‑94 (MQ=60)
CTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCA < SRR4302540.4359021/94‑1 (MQ=60)
TCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAG < SRR4302540.718728/94‑1 (MQ=60)
TCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAG < SRR4302540.3119942/94‑1 (MQ=60)
CTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGT > SRR4302540.5934497/1‑94 (MQ=60)
TGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTG < SRR4302540.3865873/94‑1 (MQ=60)
TGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTG > SRR4302540.1438231/1‑94 (MQ=60)
TGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTG > SRR4302540.1438232/1‑94 (MQ=60)
GGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGT < SRR4302540.6506099/94‑1 (MQ=60)
GTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTG < SRR4302540.7617301/94‑1 (MQ=60)
GTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTG < SRR4302540.5052270/94‑1 (MQ=60)
GTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTG < SRR4302540.1241021/94‑1 (MQ=60)
TTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGA < SRR4302540.657041/94‑1 (MQ=60)
TTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGA > SRR4302540.6807489/1‑94 (MQ=60)
TGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAA < SRR4302540.8151527/94‑1 (MQ=60)
GCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAG > SRR4302540.8744325/1‑94 (MQ=60)
GCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAG < SRR4302540.5784743/94‑1 (MQ=60)
GGTACTCACCAGTGACGGCTGGGAAACTCAGTTGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAG < SRR4302540.9389756/94‑1 (MQ=60)
GGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAG < SRR4302540.6864515/94‑1 (MQ=60)
GGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAG < SRR4302540.8840232/94‑1 (MQ=60)
GGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAG > SRR4302540.6302749/1‑94 (MQ=60)
GGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAG < SRR4302540.6864516/94‑1 (MQ=60)
GTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGA < SRR4302540.2642909/94‑1 (MQ=60)
CTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTC < SRR4302540.819447/94‑1 (MQ=60)
TCACCAGTGACGGCTGGGAAGCTCAGTGGCCTCTACCAGGAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCA < SRR4302540.7768184/94‑1 (MQ=60)
TCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCA < SRR4302540.7768183/94‑1 (MQ=60)
TCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCA < SRR4302540.4052869/94‑1 (MQ=60)
TCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCA > SRR4302540.2393757/1‑94 (MQ=60)
CACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCAC > SRR4302540.8463105/1‑94 (MQ=60)
CACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCAC > SRR4302540.9163874/1‑94 (MQ=60)
ACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACG > SRR4302540.4915326/1‑94 (MQ=60)
ACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACG > SRR4302540.7737586/1‑94 (MQ=60)
ACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACG > SRR4302540.4270325/1‑94 (MQ=60)
ACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACG < SRR4302540.9068472/94‑1 (MQ=60)
CCAGTGACGGCTGGGAACCTCAGTGGCCTCTACCAGCACCGTCATTAGCGCCGCTGGTGCCGGCTTTTCAGACGCAGTGTGAAGAGACTCACGC < SRR4302540.1059520/94‑1 (MQ=60)
CCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGC > SRR4302540.7366903/1‑94 (MQ=60)
CAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCC > SRR4302540.2198320/1‑94 (MQ=60)
TGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAG < SRR4302540.747509/94‑1 (MQ=60)
TGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAG < SRR4302540.9923282/94‑1 (MQ=60)
TGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAG < SRR4302540.3320874/94‑1 (MQ=60)
GACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGG < SRR4302540.957609/94‑1 (MQ=60)
GACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGG > SRR4302540.7056760/1‑94 (MQ=60)
GACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGG < SRR4302540.7453095/94‑1 (MQ=60)
GACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGG > SRR4302540.4991911/1‑94 (MQ=60)
GGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCT < SRR4302540.1975725/94‑1 (MQ=60)
GGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCT < SRR4302540.8964738/94‑1 (MQ=60)
TGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGC > SRR4302540.687565/1‑94 (MQ=60)
TGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGC < SRR4302540.1281300/94‑1 (MQ=60)
TGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGC < SRR4302540.5096216/94‑1 (MQ=60)
GGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAG < SRR4302540.7174346/94‑1 (MQ=60)
GAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGC < SRR4302540.3814464/94‑1 (MQ=60)
AAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCG < SRR4302540.597591/94‑1 (MQ=60)
AAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCG < SRR4302540.3329302/94‑1 (MQ=60)
AACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGT > SRR4302540.5817431/1‑94 (MQ=60)
CTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTT < SRR4302540.7873565/94‑1 (MQ=60)
CTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTT > SRR4302540.4214756/1‑94 (MQ=60)
TCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTG > SRR4302540.4073831/1‑94 (MQ=60)
TCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTG > SRR4302540.8224829/1‑94 (MQ=60)
AGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTT < SRR4302540.1164458/94‑1 (MQ=60)
AGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTT < SRR4302540.9495754/94‑1 (MQ=60)
CCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCG > SRR4302540.5489565/1‑94 (MQ=60)
CCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCG > SRR4302540.372054/1‑94 (MQ=60)
CTCTACCAGAAGCGGCATTAGCGCCGCTGGTGTCGGCTTTTCAGATGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGGTTGTTTGGCGG > SRR4302540.9044358/1‑94 (MQ=60)
CTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCC > SRR4302540.2785297/1‑94 (MQ=60)
TACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGaca > SRR4302540.3114807/1‑91 (MQ=60)
ACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCG > SRR4302540.3616878/1‑94 (MQ=60)
CCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGT > SRR4302540.9208046/1‑94 (MQ=60)
CCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGT > SRR4302540.9410249/1‑94 (MQ=60)
CCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGT > SRR4302540.7919493/1‑94 (MQ=60)
CAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTG < SRR4302540.9809680/94‑1 (MQ=60)
AGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGG < SRR4302540.680754/94‑1 (MQ=60)
AGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGG < SRR4302540.4021613/94‑1 (MQ=60)
GAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCACGTGGG > SRR4302540.1194253/1‑94 (MQ=60)
AAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGC < SRR4302540.2629450/94‑1 (MQ=60)
AAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGC < SRR4302540.3412464/94‑1 (MQ=60)
GCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCAC < SRR4302540.7949676/94‑1 (MQ=60)
CGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACT < SRR4302540.2352123/94‑1 (MQ=60)
CGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACT > SRR4302540.6393173/1‑94 (MQ=60)
GTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTG > SRR4302540.8904310/1‑94 (MQ=60)
TCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCGGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCAGTGC > SRR4302540.4984027/1‑94 (MQ=60)
TCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGC < SRR4302540.507403/94‑1 (MQ=60)
CATTAGCGCCGCTGGTGACGGCTTTTCAGCCACCGTGTGAAGAGACTCACGCCCAGCCCGGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCC < SRR4302540.7144249/94‑1 (MQ=60)
CATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCC < SRR4302540.1544672/94‑1 (MQ=60)
CATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCC > SRR4302540.6001993/1‑94 (MQ=60)
CATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCC > SRR4302540.4408013/1‑94 (MQ=60)
ATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCG > SRR4302540.3763126/1‑94 (MQ=60)
ATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCG > SRR4302540.6871566/1‑94 (MQ=60)
ATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCG > SRR4302540.4067808/1‑94 (MQ=60)
TTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGT > SRR4302540.5118378/1‑94 (MQ=60)
TAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTC < SRR4302540.134027/94‑1 (MQ=60)
AGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCT > SRR4302540.7428250/1‑94 (MQ=60)
CGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCC > SRR4302540.7678611/1‑94 (MQ=60)
CGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCC > SRR4302540.6879179/1‑94 (MQ=60)
CGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCC > SRR4302540.7678610/1‑94 (MQ=60)
GCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCG < SRR4302540.7712873/94‑1 (MQ=60)
CGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCC > SRR4302540.3145790/1‑94 (MQ=60)
CGCTGGTGACGCCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCC < SRR4302540.9407450/94‑1 (MQ=60)
GCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCG < SRR4302540.9997561/94‑1 (MQ=60)
GCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCG < SRR4302540.7063323/94‑1 (MQ=60)
GCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCG > SRR4302540.5726444/1‑94 (MQ=60)
CTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGG > SRR4302540.7791732/1‑94 (MQ=60)
CTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGG > SRR4302540.3153480/1‑94 (MQ=60)
GACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGG < SRR4302540.861196/94‑1 (MQ=60)
ACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGGCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGT < SRR4302540.2682444/94‑1 (MQ=60)
CGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTC < SRR4302540.7863621/94‑1 (MQ=60)
CGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTC < SRR4302540.942753/94‑1 (MQ=60)
CGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTC > SRR4302540.9662773/1‑94 (MQ=60)
GGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCG < SRR4302540.345198/94‑1 (MQ=60)
CTTTTCAGACGCAGTGCGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTTTCGGCCCCAGGGCACCGCCGTCTCCGCCGTGGTGGTCGGG > SRR4302540.6763520/1‑94 (MQ=60)
TTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTC > SRR4302540.1062086/1‑94 (MQ=60)
TTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGAACTGCCGTCTCCGCCGTGGGGGTCGGTC > SRR4302540.1062085/1‑94 (MQ=60)
TTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTG < SRR4302540.9450902/94‑1 (MQ=60)
TCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGG < SRR4302540.9692022/94‑1 (MQ=60)
CAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGC < SRR4302540.9701939/94‑1 (MQ=60)
AGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGCT < SRR4302540.1532616/94‑1 (MQ=60)
GCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGCTGGAT < SRR4302540.2089103/94‑1 (MQ=60)
|
ACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACACAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGCTGGAT > NC_000913/1662622‑1662808
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
