Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,662,715 A→G T65T (ACA→ACG)  b1591 → putative oxidoreductase component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,662,7150AG100.0% 585.3 / NA 180T65T (ACA→ACG) b1591putative oxidoreductase component
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (91/89);  total (91/89)

Only 100 of 188 total aligned reads displayed.

TCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACACAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGCT  >  NC_000913/1662625‑1662804
                                                                                          |                                                                                         
tctGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGAcgca                                                                                         >  1:1019320/1‑93 (MQ=255)
tctGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGAcgca                                                                                         >  1:1515642/1‑93 (MQ=255)
 ctGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAg                                                                                        >  2:365975/1‑93 (MQ=255)
 ctGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAg                                                                                        <  1:873619/93‑1 (MQ=255)
  tGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAgt                                                                                       >  1:3557183/1‑93 (MQ=255)
    gTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAgtgt                                                                                     <  2:2091899/93‑1 (MQ=255)
    gTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAgtgt                                                                                     >  2:2063499/1‑93 (MQ=255)
    gTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAgtgt                                                                                     >  2:769553/1‑93 (MQ=255)
      tGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGa                                                                                   <  2:3143233/93‑1 (MQ=255)
        cGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAag                                                                                 >  2:4156061/1‑93 (MQ=255)
          gTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAagag                                                                               <  2:1122094/93‑1 (MQ=255)
            aCTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGAc                                                                             <  2:1051078/93‑1 (MQ=255)
            aCTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGAc                                                                             >  1:5909443/1‑93 (MQ=255)
             cTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACt                                                                            >  2:1977282/1‑93 (MQ=255)
             cTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACt                                                                            >  2:5345544/1‑93 (MQ=255)
             cTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGATTTTCAGACACAGTGTGAAGAGACt                                                                            >  1:5282558/1‑93 (MQ=255)
              tCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTc                                                                           >  1:608878/1‑93 (MQ=255)
               cACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCa                                                                          <  1:4797220/93‑1 (MQ=255)
               cACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCa                                                                          <  2:4138706/93‑1 (MQ=255)
                aCCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCAc                                                                         <  1:3863664/93‑1 (MQ=255)
                aCCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCAc                                                                         <  2:229707/93‑1 (MQ=255)
                aCCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCAc                                                                         <  1:3259016/93‑1 (MQ=255)
                  cAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGc                                                                       <  2:3184891/93‑1 (MQ=255)
                   aGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGcc                                                                      >  2:5168478/1‑93 (MQ=255)
                   aGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGcc                                                                      <  2:326232/93‑1 (MQ=255)
                    gTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGccc                                                                     >  1:3312625/1‑93 (MQ=255)
                    gTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGccc                                                                     <  2:3293676/93‑1 (MQ=255)
                    gTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGccc                                                                     <  1:4192920/93‑1 (MQ=255)
                     tGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCa                                                                    <  1:204083/93‑1 (MQ=255)
                     tGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCa                                                                    <  2:563867/93‑1 (MQ=255)
                     tGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCa                                                                    <  2:5524170/93‑1 (MQ=255)
                      gACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAg                                                                   >  2:2293919/1‑93 (MQ=255)
                       aCGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAgg                                                                  >  1:5168766/1‑93 (MQ=255)
                        cGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGc                                                                 <  1:3725107/93‑1 (MQ=255)
                        cGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGc                                                                 <  2:1494016/93‑1 (MQ=255)
                         ggCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGcc                                                                <  2:5707069/93‑1 (MQ=255)
                         ggCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGcc                                                                <  2:500416/93‑1 (MQ=255)
                         ggCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGcc                                                                <  2:6030476/93‑1 (MQ=255)
                          gCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCt                                                               <  1:6186134/93‑1 (MQ=255)
                          gCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCt                                                               <  1:1179929/93‑1 (MQ=255)
                          gCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCt                                                               <  1:1850029/93‑1 (MQ=255)
                          gCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCt                                                               <  1:4637172/93‑1 (MQ=255)
                           cTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTg                                                              >  2:5063267/1‑93 (MQ=255)
                           cTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTg                                                              >  2:3451606/1‑93 (MQ=255)
                            tGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTgg                                                             >  1:2359083/1‑93 (MQ=255)
                             gggAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGc                                                            <  2:5224711/93‑1 (MQ=255)
                              ggAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCa                                                           >  1:3339913/1‑93 (MQ=255)
                               gAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAg                                                          <  2:1018944/93‑1 (MQ=255)
                                aaaCTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGc                                                         <  2:1242610/93‑1 (MQ=255)
                                 aaCTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCg                                                        >  2:4414702/1‑93 (MQ=255)
                                     cAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCgtttg                                                    >  1:1991903/1‑93 (MQ=255)
                                      aGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCgtttgt                                                   >  2:3698034/1‑93 (MQ=255)
                                       gTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCgtttgtt                                                  <  1:3155399/93‑1 (MQ=255)
                                        tGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCgtttgttt                                                 <  2:1090443/93‑1 (MQ=255)
                                          gCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGGCTGGCAGCGTttgtttgt                                               >  2:5838960/1‑93 (MQ=255)
                                            ctctACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCg                                             <  2:2172042/93‑1 (MQ=255)
                                             tctACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCgg                                            >  2:2219650/1‑93 (MQ=255)
                                             tctACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCgg                                            >  2:2054871/1‑93 (MQ=255)
                                             tctACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCgg                                            >  1:3397162/1‑93 (MQ=255)
                                             tctACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCgg                                            >  1:5370739/1‑93 (MQ=255)
                                              ctACCAGAAGCGTCATTAGCTCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGc                                           <  2:2608637/93‑1 (MQ=255)
                                               tACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGcc                                          >  1:2207110/1‑93 (MQ=255)
                                                aCCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGccc                                         >  1:2547061/1‑93 (MQ=255)
                                                 ccAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCg                                        >  1:2090008/1‑93 (MQ=255)
                                                    gAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTgg                                     >  2:648135/1‑93 (MQ=255)
                                                    gAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTgg                                     >  1:3054577/1‑93 (MQ=255)
                                                    gAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTgg                                     >  2:5689221/1‑93 (MQ=255)
                                                     aaGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTggg                                    <  1:4955905/93‑1 (MQ=255)
                                                        cGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCAc                                 <  2:4158540/93‑1 (MQ=255)
                                                        cGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCAc                                 <  2:4241080/93‑1 (MQ=255)
                                                        cGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCAc                                 <  1:2586003/93‑1 (MQ=255)
                                                           cATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGc                              >  2:85768/1‑93 (MQ=255)
                                                            aTTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGcc                             >  2:4496616/1‑93 (MQ=255)
                                                             ttAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCg                            >  1:5413291/1‑93 (MQ=255)
                                                               aGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGtc                          <  2:4327643/93‑1 (MQ=255)
                                                                  gccgcTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTcc                       <  2:1337965/93‑1 (MQ=255)
                                                                    cgcTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTccgc                     <  2:2236355/93‑1 (MQ=255)
                                                                    cgcTGGGGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGGCTccgc                     >  2:3935900/1‑93 (MQ=255)
                                                                     gcTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTccgcc                    >  2:2524591/1‑93 (MQ=255)
                                                                      cTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTccgccg                   <  2:4809794/93‑1 (MQ=255)
                                                                      cTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTccgccg                   >  1:4065144/1‑93 (MQ=255)
                                                                       tGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGt                  <  2:2776182/93‑1 (MQ=255)
                                                                       tGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGt                  >  1:4013657/1‑93 (MQ=255)
                                                                       tGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGt                  >  2:3733136/1‑93 (MQ=255)
                                                                         gTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTgg                <  1:6292934/93‑1 (MQ=255)
                                                                         gTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTgg                >  1:2295367/1‑93 (MQ=255)
                                                                         gTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTgg                <  1:4546404/93‑1 (MQ=255)
                                                                         gTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTgg                >  1:4589360/1‑93 (MQ=255)
                                                                         gTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTgg                >  1:750312/1‑93 (MQ=255)
                                                                           gACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTgggg              <  1:96349/93‑1 (MQ=255)
                                                                           gACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTgggg              >  2:3827739/1‑93 (MQ=255)
                                                                            aCGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTggggg             <  1:4905800/93‑1 (MQ=255)
                                                                             cGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGggt            <  2:5003061/93‑1 (MQ=255)
                                                                             cGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGggt            <  2:4661258/93‑1 (MQ=255)
                                                                              ggCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGggtc           >  2:1959502/1‑93 (MQ=255)
                                                                              ggCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGggtc           <  1:1412543/93‑1 (MQ=255)
                                                                               gCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGggtcg          >  2:6224403/1‑93 (MQ=255)
                                                                                   ttCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGTGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTct      <  2:5887986/93‑1 (MQ=255)
                                                                                       gACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTctggct  >  2:1677146/1‑93 (MQ=255)
                                                                                       gACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTctggct  >  2:299861/1‑93 (MQ=255)
                                                                                          |                                                                                         
TCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACACAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGCT  >  NC_000913/1662625‑1662804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACACAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGCTGG  >  NC_000913/1662623‑1662806
                                                                                            |                                                                                           
CCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGC                                                                                            >  SRR4302533.6096758/1‑94 (MQ=60)
 CTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCA                                                                                           >  SRR4302533.1025311/1‑94 (MQ=60)
 CTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCA                                                                                           >  SRR4302533.4206534/1‑94 (MQ=60)
 CTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCA                                                                                           >  SRR4302533.1524770/1‑94 (MQ=60)
   CTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGT                                                                                         >  SRR4302533.3579103/1‑94 (MQ=60)
   CTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGT                                                                                         <  SRR4302533.878750/94‑1 (MQ=60)
      GTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTG                                                                                      <  SRR4302533.2586955/94‑1 (MQ=60)
           GGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAG                                                                                 <  SRR4302533.152945/94‑1 (MQ=60)
           GGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAG                                                                                 >  SRR4302533.3140651/1‑94 (MQ=60)
           GGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAG                                                                                 <  SRR4302533.4632114/94‑1 (MQ=60)
            GTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGA                                                                                >  SRR4302533.923019/1‑94 (MQ=60)
             TACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGAC                                                                               >  SRR4302533.5945141/1‑94 (MQ=60)
              ACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGATTTTCAGACACAGTGTGAAGAGACT                                                                              >  SRR4302533.5314205/1‑94 (MQ=60)
               CTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTC                                                                             >  SRR4302533.612461/1‑94 (MQ=60)
               CTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTC                                                                             >  SRR4302533.2020670/1‑94 (MQ=60)
                TCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCA                                                                            >  SRR4302533.5120315/1‑94 (MQ=60)
                 CACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCAC                                                                           <  SRR4302533.4826279/94‑1 (MQ=60)
                  ACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACG                                                                          <  SRR4302533.3279118/94‑1 (MQ=60)
                  ACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACG                                                                          <  SRR4302533.3887249/94‑1 (MQ=60)
                   CCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGC                                                                         <  SRR4302533.6186928/94‑1 (MQ=60)
                     AGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCC                                                                       >  SRR4302533.3333080/1‑94 (MQ=60)
                      GTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCA                                                                      <  SRR4302533.4218298/94‑1 (MQ=60)
                       TGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAG                                                                     <  SRR4302533.765267/94‑1 (MQ=60)
                       TGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAG                                                                     <  SRR4302533.3332687/94‑1 (MQ=60)
                       TGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAG                                                                     <  SRR4302533.205383/94‑1 (MQ=60)
                        GACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGG                                                                    >  SRR4302533.5199964/1‑94 (MQ=60)
                          CGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCC                                                                  <  SRR4302533.3747960/94‑1 (MQ=60)
                            GCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTG                                                                <  SRR4302533.1187017/94‑1 (MQ=60)
                            GCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTG                                                                <  SRR4302533.4280226/94‑1 (MQ=60)
                            GCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTG                                                                <  SRR4302533.6223268/94‑1 (MQ=60)
                            GCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTG                                                                <  SRR4302533.4665271/94‑1 (MQ=60)
                            GCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTG                                                                <  SRR4302533.1861313/94‑1 (MQ=60)
                             CTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGG                                                               >  SRR4302533.2373663/1‑94 (MQ=60)
                              TGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGC                                                              <  SRR4302533.3248221/94‑1 (MQ=60)
                              TGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGC                                                              >  SRR4302533.2216163/1‑94 (MQ=60)
                               GGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCA                                                             >  SRR4302533.3360554/1‑94 (MQ=60)
                               GGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCA                                                             <  SRR4302533.3639770/94‑1 (MQ=60)
                               GGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCA                                                             <  SRR4302533.3389541/94‑1 (MQ=60)
                                 GAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGC                                                           <  SRR4302533.5300892/94‑1 (MQ=60)
                                      TCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTG                                                      >  SRR4302533.2004111/1‑94 (MQ=60)
                                         GTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTT                                                   <  SRR4302533.3174799/94‑1 (MQ=60)
                                           GGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGT                                                 <  SRR4302533.6301676/94‑1 (MQ=60)
                                              CTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGG                                              >  SRR4302533.5403009/1‑94 (MQ=60)
                                              CTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGG                                              >  SRR4302533.3418140/1‑94 (MQ=60)
                                                CTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCC                                            <  SRR4302533.1876660/94‑1 (MQ=60)
                                                CTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCC                                            >  SRR4302533.2220720/1‑94 (MQ=60)
                                                 TACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCC                                           >  SRR4302533.2562735/1‑94 (MQ=60)
                                                  ACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCG                                          >  SRR4302533.2102879/1‑94 (MQ=60)
                                                     AGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGG                                       >  SRR4302533.3073296/1‑94 (MQ=60)
                                                       AAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGC                                     <  SRR4302533.4985923/94‑1 (MQ=60)
                                                          CGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACT                                  <  SRR4302533.2601902/94‑1 (MQ=60)
                                                              ATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCG                              >  SRR4302533.4665896/1‑94 (MQ=60)
                                                              ATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCG                              >  SRR4302533.4884603/1‑94 (MQ=60)
                                                              ATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCG                              >  SRR4302533.5445842/1‑94 (MQ=60)
                                                              ATTAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCG                              >  SRR4302533.1474061/1‑94 (MQ=60)
                                                                TAGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTC                            <  SRR4302533.3857473/94‑1 (MQ=60)
                                                                 AGCGCCGCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCT                           >  SRR4302533.2545518/1‑94 (MQ=60)
                                                                       GCTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCG                     >  SRR4302533.4089888/1‑94 (MQ=60)
                                                                        CTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGT                    >  SRR4302533.4038095/1‑94 (MQ=60)
                                                                        CTGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGT                    >  SRR4302533.4936282/1‑94 (MQ=60)
                                                                         TGGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTG                   >  SRR4302533.4052936/1‑94 (MQ=60)
                                                                          GGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGGCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGG                  <  SRR4302533.3928433/94‑1 (MQ=60)
                                                                          GGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGG                  >  SRR4302533.754730/1‑94 (MQ=60)
                                                                          GGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGG                  >  SRR4302533.4617158/1‑94 (MQ=60)
                                                                          GGTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGG                  >  SRR4302533.2309582/1‑94 (MQ=60)
                                                                           GTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGG                 <  SRR4302533.6330451/94‑1 (MQ=60)
                                                                           GTGACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGG                 <  SRR4302533.4573938/94‑1 (MQ=60)
                                                                             GACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGG               <  SRR4302533.96953/94‑1 (MQ=60)
                                                                             GACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGG               >  SRR4302533.2602922/1‑94 (MQ=60)
                                                                              ACGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGT              <  SRR4302533.4935524/94‑1 (MQ=60)
                                                                               CGGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTC             <  SRR4302533.3482471/94‑1 (MQ=60)
                                                                                GGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCG            <  SRR4302533.5927085/94‑1 (MQ=60)
                                                                                GGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCG            <  SRR4302533.1421087/94‑1 (MQ=60)
                                                                                GGCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGGCG            >  SRR4302533.5949488/1‑94 (MQ=60)
                                                                                 GCTTTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGG           >  SRR4302533.2093026/1‑94 (MQ=60)
                                                                                    TTTCAGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCT        >  SRR4302533.5330435/1‑94 (MQ=60)
                                                                                        AGACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGCT    >  SRR4302533.1373191/1‑94 (MQ=60)
                                                                                        AGACGCAGTGTGAAGAGACTCACGCCCAGGCCCGGCAGCGACTGTGTGTTGGCCCGGGGGCACTGCCGTCTCCGCCGTGGGGGGCGGTCTGGCG    >  SRR4302533.6342085/1‑94 (MQ=60)
                                                                                         GACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGCTG   <  SRR4302533.2369921/94‑1 (MQ=60)
                                                                                          ACGCAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGTCCGTCGGCACTGCCGTCTCCGCCGTGGGGGGCGGTGTGGCTGG  >  SRR4302533.721922/1‑94 (MQ=60)
                                                                                            |                                                                                           
CCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCGCTGGTGACGGCTTTTCAGACACAGTGTGAAGAGACTCACGCCCAGGCCTGGCAGCGTTTGTTTGTCGGCCCGTGGGCACTGCCGTCTCCGCCGTGGGGGTCGGTCTGGCTGG  >  NC_000913/1662623‑1662806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑