Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,751,328 A→G M176T (ATG→ACG)  b1673 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,751,3280AG100.0% 800.3 / NA 248M176T (ATG→ACG) b1673hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (134/114);  total (134/114)

Only 100 of 255 total aligned reads displayed.

TTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTC  >  NC_000913/1751238‑1751417
                                                                                          |                                                                                         
 tCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGc                                                                                        <  2:2716908/93‑1 (MQ=255)
 tCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGc                                                                                        <  1:5915759/93‑1 (MQ=255)
  cGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGcc                                                                                       <  1:9484004/93‑1 (MQ=255)
     cccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCaga                                                                                    >  2:420926/1‑93 (MQ=255)
     cccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCaga                                                                                    <  2:8385901/93‑1 (MQ=255)
      ccTTCAACCGCAATCGTTTTCAGCTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagag                                                                                   <  2:5511209/93‑1 (MQ=255)
      ccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagag                                                                                   <  2:2354202/93‑1 (MQ=255)
        ctCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagag                                                                                 <  1:3266375/92‑1 (MQ=255)
         tCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagaga                                                                                >  2:1523996/1‑93 (MQ=255)
          cAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagagag                                                                               <  2:8580507/93‑1 (MQ=255)
             cctcAATCTCTTTCAGGTTTTTCGAACCCATTAATGCGCCAGTTCCCGCACCGCCGCTGTGGTTCCGGCTATTCAACGTGCCAGAGAGAGGaa                                                                            <  1:8202176/90‑1 (MQ=255)
             ccGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCTGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGaa                                                                            <  1:4921358/93‑1 (MQ=255)
              cGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAAc                                                                           <  1:9714680/93‑1 (MQ=255)
              cGCAATCCTTTTCAGGTTTTCCGAACCCTTTATTGCG‑CAGTTCCCGCCCCGGCGGTGTGGGTACGGCTATTCAACGTGCCAGAGAGAGGAACa                                                                          <  1:1558644/93‑1 (MQ=255)
               gCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACa                                                                          <  1:7335226/93‑1 (MQ=255)
                cAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACaa                                                                         <  1:1322081/93‑1 (MQ=255)
                cAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACaa                                                                         <  2:2050981/93‑1 (MQ=255)
                 aaTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAg                                                                        >  2:6517861/1‑93 (MQ=255)
                  aTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAgg                                                                       <  1:1118807/93‑1 (MQ=255)
                     gCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGttt                                                                    >  2:3343810/1‑93 (MQ=255)
                     gCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGttt                                                                    <  2:7839029/93‑1 (MQ=255)
                     gCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGttt                                                                    <  1:5294893/93‑1 (MQ=255)
                     gCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGttt                                                                    >  2:5358996/1‑93 (MQ=255)
                        ttCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTcc                                                                 >  1:4249658/1‑93 (MQ=255)
                         tCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTccc                                                                >  2:4515152/1‑93 (MQ=255)
                          cAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCGGAGAGAGGAACAAGGTTTTcccc                                                               <  2:7250096/93‑1 (MQ=255)
                          cAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTcccc                                                               <  1:8804380/93‑1 (MQ=255)
                          cAGGATTTTCGAACCCATTATTGCGCCAGCTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGCACAAGGTTTTtccc                                                               >  1:6747908/1‑93 (MQ=255)
                            ggTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAg                                                             >  2:2665991/1‑93 (MQ=255)
                            ggTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAg                                                             <  1:3695536/93‑1 (MQ=255)
                             gTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGc                                                            <  2:5805847/93‑1 (MQ=255)
                               ttttCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCt                                                          <  1:4994063/93‑1 (MQ=255)
                               ttttCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCt                                                          <  2:5926957/93‑1 (MQ=255)
                                tttCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTg                                                         <  1:2329842/93‑1 (MQ=255)
                                  tCGAACCCAGTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGAc                                                       <  1:8026235/93‑1 (MQ=255)
                                   cGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGAcc                                                      >  2:3786332/1‑93 (MQ=255)
                                   cGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGAcc                                                      >  1:515914/1‑93 (MQ=255)
                                     aaCCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCaa                                                    >  1:2830081/1‑93 (MQ=255)
                                       cccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATa                                                  >  1:1223100/1‑93 (MQ=255)
                                       cccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATa                                                  >  2:1832221/1‑93 (MQ=255)
                                       cccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATa                                                  >  1:1791860/1‑93 (MQ=255)
                                        ccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAg                                                 >  1:3922672/1‑93 (MQ=255)
                                        ccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAg                                                 >  1:9010312/1‑93 (MQ=255)
                                        ccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAg                                                 >  1:2532603/1‑93 (MQ=255)
                                         cATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgc                                                <  1:3086206/93‑1 (MQ=255)
                                         cATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgc                                                >  1:7781976/1‑93 (MQ=255)
                                          attattGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgcc                                               <  2:7358340/93‑1 (MQ=255)
                                          attattGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgcc                                               <  2:389327/93‑1 (MQ=255)
                                          attattGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgcc                                               >  1:4449386/1‑93 (MQ=255)
                                                gcgcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcaca                                         <  1:9387692/93‑1 (MQ=255)
                                                 cgcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacac                                        >  1:7561953/1‑93 (MQ=255)
                                                  gcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacaca                                       <  1:4578331/93‑1 (MQ=255)
                                                   ccAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAg                                      >  2:9197047/1‑93 (MQ=255)
                                                     aGTTCCCGCGCCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGt                                    <  2:4375780/93‑1 (MQ=255)
                                                     aGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGGCAGAGAGATGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAgga                                    >  2:3763901/1‑92 (MQ=255)
                                                     aGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACCCAGGt                                    >  1:3339788/1‑93 (MQ=255)
                                                      gTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGtt                                   >  1:6950340/1‑93 (MQ=255)
                                                      gTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGtt                                   <  2:6145457/93‑1 (MQ=255)
                                                       ttCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGttt                                  >  2:4886484/1‑93 (MQ=255)
                                                        tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc                                 >  2:3849715/1‑93 (MQ=255)
                                                        tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc                                 <  2:7117703/93‑1 (MQ=255)
                                                        tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc                                 <  2:7274620/93‑1 (MQ=255)
                                                        tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc                                 <  1:9612069/93‑1 (MQ=255)
                                                         cccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTcc                                <  1:8871156/93‑1 (MQ=255)
                                                         cccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTcc                                >  2:4617356/1‑93 (MQ=255)
                                                         cccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTcc                                >  2:8668030/1‑93 (MQ=255)
                                                            gCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGa                             >  1:3552374/1‑93 (MQ=255)
                                                            gCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGa                             <  1:928916/93‑1 (MQ=255)
                                                            gCACCGCCGCTGTGGTGACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTGTTCCCCAGCCTGACCAATAGTCTCCACACAGTTTGCCTGa                             >  2:8979692/1‑93 (MQ=255)
                                                             cACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGAc                            <  1:4368247/93‑1 (MQ=255)
                                                             cACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGAc                            >  2:7443858/1‑93 (MQ=255)
                                                               ccgccgCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTg                          >  2:6558240/1‑93 (MQ=255)
                                                                 gccgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGt                        <  2:7676644/93‑1 (MQ=255)
                                                                  ccgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTc                       >  2:6290434/1‑93 (MQ=255)
                                                                   cgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCa                      <  1:1008686/93‑1 (MQ=255)
                                                                   cgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCa                      <  1:8549503/93‑1 (MQ=255)
                                                                   cgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCa                      <  2:6446684/93‑1 (MQ=255)
                                                                    gcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCaa                     >  2:948735/1‑93 (MQ=255)
                                                                    gcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCaa                     >  1:5037832/1‑93 (MQ=255)
                                                                    gcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCaa                     <  1:3804943/93‑1 (MQ=255)
                                                                      tgtgGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATc                   >  1:6664761/1‑93 (MQ=255)
                                                                       gtgGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCg                  >  1:4029193/1‑93 (MQ=255)
                                                                       gtgGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCg                  >  1:7281916/1‑93 (MQ=255)
                                                                         ggTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGAc                >  1:9964204/1‑93 (MQ=255)
                                                                            tACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACaaa             <  2:2877689/93‑1 (MQ=255)
                                                                               ggCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAAttt          <  2:6741128/93‑1 (MQ=255)
                                                                               ggCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAAttt          >  2:3590531/1‑93 (MQ=255)
                                                                                gCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttc         <  2:5053854/93‑1 (MQ=255)
                                                                                gCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttc         <  1:656335/93‑1 (MQ=255)
                                                                                 cTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCCATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttct        >  2:8776991/1‑93 (MQ=255)
                                                                                 cTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttct        >  1:3515394/1‑93 (MQ=255)
                                                                                  tATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttctt       >  2:7905437/1‑93 (MQ=255)
                                                                                  tATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttctt       <  2:9689642/93‑1 (MQ=255)
                                                                                   aTTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttcttc      <  2:499554/93‑1 (MQ=255)
                                                                                   aTTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttcttc      >  2:7549201/1‑93 (MQ=255)
                                                                                   aTTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttcttc      <  1:6232555/93‑1 (MQ=255)
                                                                                    ttCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTcc     <  2:328432/93‑1 (MQ=255)
                                                                                    ttCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTcc     <  2:3173627/93‑1 (MQ=255)
                                                                                     tCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCcg    >  1:10023879/1‑93 (MQ=255)
                                                                                      cAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCcgt   <  1:7140500/93‑1 (MQ=255)
                                                                                          |                                                                                         
TTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTC  >  NC_000913/1751238‑1751417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTTG  >  NC_000913/1751235‑1751421
                                                                                             |                                                                                             
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACG                                                                                               <  SRR4302540.7127788/94‑1 (MQ=60)
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACG                                                                                               >  SRR4302540.397981/1‑94 (MQ=60)
 CTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGT                                                                                              >  SRR4302540.8003324/1‑94 (MQ=60)
 CTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGT                                                                                              >  SRR4302540.5771981/1‑94 (MQ=60)
   TTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGC                                                                                            <  SRR4302540.4380106/94‑1 (MQ=60)
    TCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCC                                                                                           >  SRR4302540.7486071/1‑94 (MQ=60)
    TCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCC                                                                                           <  SRR4302540.5981112/94‑1 (MQ=60)
    TCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCC                                                                                           >  SRR4302540.503209/1‑94 (MQ=60)
     CGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCA                                                                                          <  SRR4302540.9596452/94‑1 (MQ=60)
      GTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAG                                                                                         >  SRR4302540.10035761/1‑94 (MQ=60)
      GTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAG                                                                                         >  SRR4302540.7242482/1‑94 (MQ=60)
       TCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGA                                                                                        >  SRR4302540.4992910/1‑94 (MQ=60)
       TCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGA                                                                                        >  SRR4302540.161752/1‑94 (MQ=60)
          CTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAG                                                                                     >  SRR4302540.3724834/1‑94 (MQ=60)
          CTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAG                                                                                     <  SRR4302540.5401108/94‑1 (MQ=60)
          CTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAG                                                                                     >  SRR4302540.6939283/1‑94 (MQ=60)
           TTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGG                                                                                    >  SRR4302540.3553910/1‑94 (MQ=60)
           TTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGA                                                                                    >  SRR4302540.8711600/1‑94 (MQ=60)
           CTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGA                                                                                    <  SRR4302540.3302016/94‑1 (MQ=60)
            TCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAG                                                                                   >  SRR4302540.1263486/1‑94 (MQ=60)
             CAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCCCCGCCGCTGTGGTTACGGCTATTCAACGTGCCCGAGCGAGG                                                                                  >  SRR4302540.664512/1‑94 (MQ=60)
             CAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGG                                                                                  <  SRR4302540.3851538/94‑1 (MQ=60)
             CAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGG                                                                                  >  SRR4302540.459121/1‑94 (MQ=60)
               ACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAA                                                                                <  SRR4302540.2508998/94‑1 (MQ=60)
               ACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAA                                                                                <  SRR4302540.1680833/94‑1 (MQ=60)
                ccccagtccgttgCAGGTTTTTCGAACCCATTAGTGCGGCAGGTCCCGCCCCGCCGCTGTTGTTACGGCTATTCAACGTGCCAGAGAGAGGAAC                                                                               <  SRR4302540.4974380/81‑1 (MQ=60)
                CCTCAATCTCTTTCAGGTTTTTCGAACCCATTAATGCGCCAGTTCCCGCACCGCCGCTGTGGTTCCGGCTATTCAACGTGCCAGAGAGAGGAAC                                                                               <  SRR4302540.8297490/94‑1 (MQ=60)
                CCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCTGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAAC                                                                               <  SRR4302540.4974381/94‑1 (MQ=60)
                 CGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACA                                                                              <  SRR4302540.9828832/94‑1 (MQ=60)
                  GCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAA                                                                             <  SRR4302540.7417089/94‑1 (MQ=60)
                  GCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAA                                                                             <  SRR4302540.8838477/94‑1 (MQ=60)
                   CAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAG                                                                            <  SRR4302540.1335855/94‑1 (MQ=60)
                     ATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGT                                                                          <  SRR4302540.1130414/94‑1 (MQ=60)
                     ATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGT                                                                          <  SRR4302540.1130415/94‑1 (MQ=60)
                        GCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT                                                                       <  SRR4302540.1978111/94‑1 (MQ=60)
                        GCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT                                                                       <  SRR4302540.5352797/94‑1 (MQ=60)
                        GCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT                                                                       >  SRR4302540.7929818/1‑94 (MQ=60)
                         CTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTC                                                                      <  SRR4302540.6370609/94‑1 (MQ=60)
                         CTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTC                                                                      <  SRR4302540.9602009/94‑1 (MQ=60)
                         CTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTC                                                                      >  SRR4302540.3950208/1‑94 (MQ=60)
                          TTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCC                                                                     <  SRR4302540.6817437/94‑1 (MQ=60)
                          TTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCC                                                                     >  SRR4302540.3654533/1‑94 (MQ=60)
                          TTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCC                                                                     >  SRR4302540.437335/1‑94 (MQ=60)
                          TTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCC                                                                     >  SRR4302540.4295893/1‑94 (MQ=60)
                           TTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACAGCCCCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCC                                                                    >  SRR4302540.1088509/1‑94 (MQ=60)
                            TCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGCCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCC                                                                   <  SRR4302540.4924636/94‑1 (MQ=60)
                            TCAGGATTTTCGAACCCATTATTGCGCCAGCTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGCACAAGGTTTTTCCC                                                                   >  SRR4302540.6822471/1‑94 (MQ=60)
                             CAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCA                                                                  >  SRR4302540.6347827/1‑94 (MQ=60)
                             CAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCA                                                                  <  SRR4302540.8906158/94‑1 (MQ=60)
                              AGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAG                                                                 >  SRR4302540.2529366/1‑94 (MQ=60)
                              AGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAG                                                                 >  SRR4302540.7355520/1‑94 (MQ=60)
                               GGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGC                                                                <  SRR4302540.3735888/94‑1 (MQ=60)
                                 TTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCT                                                              <  SRR4302540.9492046/94‑1 (MQ=60)
                                  TTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTG                                                             <  SRR4302540.5048126/94‑1 (MQ=60)
                                   TTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGA                                                            <  SRR4302540.2354942/94‑1 (MQ=60)
                                     TCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACC                                                          >  SRR4302540.521445/1‑94 (MQ=60)
                                     TCGAACCCAGTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACC                                                          <  SRR4302540.8119573/94‑1 (MQ=60)
                                       GAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAA                                                        >  SRR4302540.9116173/1‑94 (MQ=60)
                                       GAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAA                                                        >  SRR4302540.2860694/1‑94 (MQ=60)
                                        AACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAT                                                       >  SRR4302540.2763625/1‑94 (MQ=60)
                                         ACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATA                                                      >  SRR4302540.1235610/1‑94 (MQ=60)
                                         ACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATA                                                      >  SRR4302540.5146922/1‑94 (MQ=60)
                                         ACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATA                                                      >  SRR4302540.1811332/1‑94 (MQ=60)
                                         ACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATA                                                      >  SRR4302540.7395242/1‑94 (MQ=60)
                                          CCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAG                                                     >  SRR4302540.2559925/1‑94 (MQ=60)
                                          CCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAG                                                     >  SRR4302540.9118404/1‑94 (MQ=60)
                                          CCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAG                                                     <  SRR4302540.3157875/94‑1 (MQ=60)
                                          CCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAG                                                     >  SRR4302540.3965125/1‑94 (MQ=60)
                                           CCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGC                                                    >  SRR4302540.7872936/1‑94 (MQ=60)
                                           CCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGC                                                    <  SRR4302540.7016892/94‑1 (MQ=60)
                                            CATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCC                                                   >  SRR4302540.4497608/1‑94 (MQ=60)
                                            CATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCC                                                   <  SRR4302540.3120069/94‑1 (MQ=60)
                                            CATTAGTGCGCCAGTGCCCGCACCGTCGATGTGGTGACGGGTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCC                                                   <  SRR4302540.3120068/94‑1 (MQ=60)
                                             ATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCG                                                  >  SRR4302540.1277859/1‑94 (MQ=60)
                                               TATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCC                                                <  SRR4302540.7498531/94‑1 (MQ=60)
                                                TTTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCA                                               <  SRR4302540.42097/94‑1 (MQ=60)
                                                   GCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACAC                                            >  SRR4302540.7646770/1‑94 (MQ=60)
                                                   GCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACAC                                            <  SRR4302540.9499421/94‑1 (MQ=60)
                                                     GCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAG                                          <  SRR4302540.3281959/94‑1 (MQ=60)
                                                     GCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAG                                          <  SRR4302540.4627703/94‑1 (MQ=60)
                                                       CAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACCCAGGT                                        >  SRR4302540.3376449/1‑94 (MQ=60)
                                                        AGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTT                                       >  SRR4302540.7027676/1‑94 (MQ=60)
                                                        AGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTT                                       >  SRR4302540.4480350/1‑94 (MQ=60)
                                                        AGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTT                                       <  SRR4302540.1379834/94‑1 (MQ=60)
                                                          TTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTC                                     <  SRR4302540.8290745/94‑1 (MQ=60)
                                                          TTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTC                                     <  SRR4302540.2945207/94‑1 (MQ=60)
                                                           TCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCC                                    <  SRR4302540.6651096/94‑1 (MQ=60)
                                                           TCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCC                                    <  SRR4302540.7854461/94‑1 (MQ=60)
                                                           TCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCC                                    <  SRR4302540.9725403/94‑1 (MQ=60)
                                                           TCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCC                                    >  SRR4302540.5149665/1‑94 (MQ=60)
                                                           TCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCC                                    <  SRR4302540.6288500/94‑1 (MQ=60)
                                                            CCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCG                                   >  SRR4302540.3415921/1‑94 (MQ=60)
                                                            CCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCG                                   <  SRR4302540.8973817/94‑1 (MQ=60)
                                                              CGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGA                                 >  SRR4302540.3591189/1‑94 (MQ=60)
                                                               GCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGAC                                <  SRR4302540.938693/94‑1 (MQ=60)
                                                                CACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACT                               <  SRR4302540.4415708/94‑1 (MQ=60)
                                                                 CCCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTGCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTG                              <  SRR4302540.9884620/94‑1 (MQ=60)
                                                                      CGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAA                         >  SRR4302540.8938420/1‑94 (MQ=60)
                                                                      CGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAA                         >  SRR4302540.4063740/1‑94 (MQ=60)
                                                                      CGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAA                         <  SRR4302540.9645438/94‑1 (MQ=60)
                                                                      CGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAA                         <  SRR4302540.8648820/94‑1 (MQ=60)
                                                                      CGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAA                         <  SRR4302540.1018917/94‑1 (MQ=60)
                                                                      CGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAA                         >  SRR4302540.5092327/1‑94 (MQ=60)
                                                                       GCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGGCTGGCCAATAGCCGCCACACAGGTTTCCGTACTGGTCAAT                        >  SRR4302540.9768036/1‑94 (MQ=60)
                                                                       GCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAAT                        <  SRR4302540.3846386/94‑1 (MQ=60)
                                                                       GCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAAT                        <  SRR4302540.5296944/94‑1 (MQ=60)
                                                                        CTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATC                       >  SRR4302540.6738430/1‑94 (MQ=60)
                                                                         TGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCG                      >  SRR4302540.4072639/1‑94 (MQ=60)
                                                                         TGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCG                      >  SRR4302540.7363175/1‑94 (MQ=60)
                                                                           TGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGAC                    >  SRR4302540.10080460/1‑94 (MQ=60)
                                                                            GGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACA                   <  SRR4302540.8192401/94‑1 (MQ=60)
                                                                              TTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAA                 <  SRR4302540.9200972/94‑1 (MQ=60)
                                                                              TTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCAGGACTGGTCAATCGACAAA                 >  SRR4302540.4216538/1‑94 (MQ=60)
                                                                               TACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAAT                >  SRR4302540.852658/1‑94 (MQ=60)
                                                                               TACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAAT                >  SRR4302540.3335539/1‑94 (MQ=60)
                                                                                ACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATT               <  SRR4302540.7094841/94‑1 (MQ=60)
                                                                                 CGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACCCAGGTTTCCGGACTGGTCAATCGACAAATTT              <  SRR4302540.4567318/94‑1 (MQ=60)
                                                                                   GCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCT            >  SRR4302540.10144408/1‑94 (MQ=60)
                                                                                   GCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCT            >  SRR4302540.1073091/1‑94 (MQ=60)
                                                                                   GCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCT            <  SRR4302540.663335/94‑1 (MQ=60)
                                                                                   GCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCT            >  SRR4302540.3553692/1‑94 (MQ=60)
                                                                                     TATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTC          >  SRR4302540.8981433/1‑94 (MQ=60)
                                                                                      ATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCC         <  SRR4302540.6301872/94‑1 (MQ=60)
                                                                                      ATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCC         <  SRR4302540.5639509/94‑1 (MQ=60)
                                                                                      ATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCC         >  SRR4302540.3742966/1‑94 (MQ=60)
                                                                                      ATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAAACGACAAATTTCTTCC         <  SRR4302540.7946064/94‑1 (MQ=60)
                                                                                      ATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCAGGACTGGTCAATCGACAAATTTCTTCC         >  SRR4302540.3551870/1‑94 (MQ=60)
                                                                                       TTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCG        >  SRR4302540.10140520/1‑94 (MQ=60)
                                                                                        TCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGT       <  SRR4302540.954977/94‑1 (MQ=60)
                                                                                         CAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTC      <  SRR4302540.7220050/94‑1 (MQ=60)
                                                                                          AACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCG     <  SRR4302540.9402371/94‑1 (MQ=60)
                                                                                          AACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCG     <  SRR4302540.5048778/94‑1 (MQ=60)
                                                                                          AACGTGCCAGAGAGAGGAACAAGGGTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCG     >  SRR4302540.1592838/1‑94 (MQ=60)
                                                                                             GTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTTG  >  SRR4302540.3787425/1‑94 (MQ=60)
                                                                                             GTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTTG  <  SRR4302540.1321853/94‑1 (MQ=60)
                                                                                             GTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTTG  >  SRR4302540.8439048/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTTG  >  NC_000913/1751235‑1751421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑