Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,751,328 A→G M176T (ATG→ACG)  b1673 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,751,3280AG100.0% 642.8 / NA 198M176T (ATG→ACG) b1673hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (109/89);  total (109/89)

Only 100 of 204 total aligned reads displayed.

TTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTC  >  NC_000913/1751238‑1751417
                                                                                          |                                                                                         
ttCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTg                                                                                         <  2:3825211/93‑1 (MQ=255)
  cGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGcc                                                                                       >  1:5303917/1‑93 (MQ=255)
     cccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCaga                                                                                    <  2:3680525/93‑1 (MQ=255)
     cccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCaga                                                                                    >  1:4116262/1‑93 (MQ=255)
      ccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagag                                                                                   >  1:1771748/1‑93 (MQ=255)
      ccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagag                                                                                   <  1:1257447/93‑1 (MQ=255)
       cTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagaga                                                                                  <  2:1327804/93‑1 (MQ=255)
         tCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagaga                                                                                >  1:3725875/1‑93 (MQ=255)
           aaCCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAgg                                                                              >  2:1684042/1‑93 (MQ=255)
            aCCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGa                                                                             <  2:5329465/93‑1 (MQ=255)
              cGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAAc                                                                           >  2:4087782/1‑93 (MQ=255)
               gCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACa                                                                          >  2:2384827/1‑93 (MQ=255)
                cAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACaa                                                                         <  2:4349966/93‑1 (MQ=255)
                 aaTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAg                                                                        >  1:2454912/1‑93 (MQ=255)
                 aaTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAg                                                                        <  2:321118/93‑1 (MQ=255)
                 aaTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAg                                                                        <  2:3968513/93‑1 (MQ=255)
                 aaTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAg                                                                        >  2:3454371/1‑93 (MQ=255)
                 aaTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAg                                                                        <  1:1577184/93‑1 (MQ=255)
                  aTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAgg                                                                       >  2:2700438/1‑93 (MQ=255)
                  aTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAgg                                                                       >  1:4232778/1‑93 (MQ=255)
                  aTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAgg                                                                       <  1:3626008/93‑1 (MQ=255)
                   tCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGt                                                                      <  2:3197025/93‑1 (MQ=255)
                    cGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGtt                                                                     <  1:2896104/93‑1 (MQ=255)
                     gCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGttt                                                                    <  1:2146970/93‑1 (MQ=255)
                     gCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGttt                                                                    <  2:1453522/93‑1 (MQ=255)
                     gCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGttt                                                                    <  1:3867757/93‑1 (MQ=255)
                      cTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGtttt                                                                   >  1:5124874/1‑93 (MQ=255)
                       tttCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTc                                                                  >  1:3440907/1‑93 (MQ=255)
                       tttCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTc                                                                  >  2:6013687/1‑93 (MQ=255)
                       tttCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTc                                                                  >  1:5658995/1‑93 (MQ=255)
                         tCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTccc                                                                <  1:3304856/93‑1 (MQ=255)
                           aGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCa                                                              >  2:3439758/1‑93 (MQ=255)
                            ggTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAg                                                             >  2:2540488/1‑93 (MQ=255)
                            ggTTTTTCGAACCCATTATGGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAg                                                             >  2:6080942/1‑93 (MQ=255)
                              tttttCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGcc                                                           <  2:3735838/93‑1 (MQ=255)
                              tttttCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGcc                                                           >  1:4428728/1‑93 (MQ=255)
                                    gAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCa                                                     >  2:1403388/1‑93 (MQ=255)
                                     aaCCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCaa                                                    >  1:2064116/1‑93 (MQ=255)
                                      aCCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAt                                                   >  2:2165936/1‑93 (MQ=255)
                                      aCCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAt                                                   <  1:3127938/93‑1 (MQ=255)
                                       cccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATa                                                  >  1:6156769/1‑93 (MQ=255)
                                        ccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAg                                                 >  1:1972159/1‑93 (MQ=255)
                                          attattGCGCCAGTGCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgcc                                               <  1:5490757/93‑1 (MQ=255)
                                             attGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgccgcc                                            >  2:1494864/1‑93 (MQ=255)
                                               tGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcac                                          <  1:932779/93‑1 (MQ=255)
                                                gcgcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcaca                                         >  1:2253735/1‑93 (MQ=255)
                                                 cgcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGGCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacac                                        >  2:3555822/1‑93 (MQ=255)
                                                  gcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacaca                                       <  1:5859844/93‑1 (MQ=255)
                                                  gcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacaca                                       <  2:1854375/93‑1 (MQ=255)
                                                  gcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacaca                                       >  2:5668086/1‑93 (MQ=255)
                                                   ccAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAg                                      >  2:2091385/1‑93 (MQ=255)
                                                    cAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACCgg                                     >  2:5418253/1‑93 (MQ=255)
                                                    cAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAgg                                     <  2:2871566/93‑1 (MQ=255)
                                                    cAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAgg                                     >  1:5766703/1‑93 (MQ=255)
                                                     aGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGt                                    <  1:474655/93‑1 (MQ=255)
                                                      gtccccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGtt                                   <  1:2959214/90‑1 (MQ=255)
                                                      gTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGtt                                   >  1:2376659/1‑93 (MQ=255)
                                                       ttCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGttt                                  <  2:3065755/93‑1 (MQ=255)
                                                        tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc                                 <  1:4958486/93‑1 (MQ=255)
                                                        tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc                                 >  1:462507/1‑93 (MQ=255)
                                                         cccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTcc                                >  1:982999/1‑93 (MQ=255)
                                                          ccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCg                               <  1:625950/93‑1 (MQ=255)
                                                           cGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCgg                              >  1:2227895/1‑93 (MQ=255)
                                                            gCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGa                             >  2:5436557/1‑93 (MQ=255)
                                                             cACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGAc                            >  1:4174430/1‑93 (MQ=255)
                                                             cACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGAc                            <  2:4129323/93‑1 (MQ=255)
                                                              cccgccgCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACt                           <  1:1458409/92‑1 (MQ=255)
                                                              aCCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACt                           <  2:3107154/93‑1 (MQ=255)
                                                              aCCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACt                           <  1:2664070/93‑1 (MQ=255)
                                                              aCCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGACGCCACACAGGTTTCCGGACt                           >  1:5931282/1‑93 (MQ=255)
                                                               ccgccgCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTg                          <  2:3595039/93‑1 (MQ=255)
                                                               ccgccgCTGTGGTGACGGCTATTCAGCCTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTg                          <  2:6215359/93‑1 (MQ=255)
                                                                  ccgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTc                       <  1:5077244/93‑1 (MQ=255)
                                                                    gcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCaa                     >  1:4128271/1‑93 (MQ=255)
                                                                    gcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCaa                     >  2:5787409/1‑93 (MQ=255)
                                                                     ctatgGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAAt                    <  1:5800911/90‑1 (MQ=255)
                                                                      tgtgGCTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATc                   >  2:1541376/1‑93 (MQ=255)
                                                                      tgtgGCTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATc                   <  1:5695173/93‑1 (MQ=255)
                                                                       gtgGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCg                  >  2:4506129/1‑93 (MQ=255)
                                                                        tgGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGa                 <  2:1116185/93‑1 (MQ=255)
                                                                        tgGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGa                 >  2:4258201/1‑93 (MQ=255)
                                                                          gTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACa               >  1:1739945/1‑93 (MQ=255)
                                                                           ttACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACaa              >  2:2512803/1‑93 (MQ=255)
                                                                            tACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACaaa             <  1:5407211/93‑1 (MQ=255)
                                                                                gCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttc         >  1:3137551/1‑93 (MQ=255)
                                                                                gCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttc         >  1:2780039/1‑93 (MQ=255)
                                                                                 cTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttct        <  2:1930945/93‑1 (MQ=255)
                                                                                  tATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttctt       >  1:909251/1‑93 (MQ=255)
                                                                                  tATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttctt       >  2:4863899/1‑93 (MQ=255)
                                                                                  tATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttctt       >  1:3350940/1‑93 (MQ=255)
                                                                                  tATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttctt       >  1:2333228/1‑93 (MQ=255)
                                                                                  tATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttctt       <  1:1894284/93‑1 (MQ=255)
                                                                                   atgcAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttcttc      <  2:5747/90‑1 (MQ=255)
                                                                                   aTTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttcttc      >  2:5005654/1‑93 (MQ=255)
                                                                                   aTTCAACGTGCCAGAGAGAGGAACAAGGTTTGCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttcttc      <  1:2523810/93‑1 (MQ=255)
                                                                                    ttCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTcc     >  2:2909209/1‑93 (MQ=255)
                                                                                    ttCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTcc     <  2:5478948/93‑1 (MQ=255)
                                                                                      cAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCcgt   <  1:445538/93‑1 (MQ=255)
                                                                                       aaCGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCcgtc  <  1:1337659/93‑1 (MQ=255)
                                                                                       aaCGTGCCAGAGAGAGGAACAAGGCTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCcgtc  >  2:3001704/1‑93 (MQ=255)
                                                                                          |                                                                                         
TTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTC  >  NC_000913/1751238‑1751417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTTG  >  NC_000913/1751235‑1751421
                                                                                             |                                                                                             
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACG                                                                                               >  SRR4302533.4962264/1‑94 (MQ=60)
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACG                                                                                               <  SRR4302533.654562/94‑1 (MQ=60)
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACG                                                                                               >  SRR4302533.5025885/1‑94 (MQ=60)
CCTTTCGGCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACG                                                                                               <  SRR4302533.4178900/94‑1 (MQ=60)
  TTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTG                                                                                             <  SRR4302533.5209478/94‑1 (MQ=60)
   TTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGC                                                                                            >  SRR4302533.2022679/1‑94 (MQ=60)
   TTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGC                                                                                            >  SRR4302533.6298885/1‑94 (MQ=60)
    TCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCC                                                                                           >  SRR4302533.5335694/1‑94 (MQ=60)
       TCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTGTTCAACGTGCCAGA                                                                                        >  SRR4302533.1937918/1‑94 (MQ=60)
       TCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGA                                                                                        >  SRR4302533.4141269/1‑94 (MQ=60)
       TCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACAGCCGCTGTGGTTACGGCTATTCAACGTGCCAGA                                                                                        >  SRR4302533.2606022/1‑94 (MQ=60)
        CCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAG                                                                                       >  SRR4302533.2918031/1‑94 (MQ=60)
        CCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAG                                                                                       >  SRR4302533.1782535/1‑94 (MQ=60)
         CCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGA                                                                                      >  SRR4302533.1277295/1‑94 (MQ=60)
         CCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGA                                                                                      <  SRR4302533.1264965/94‑1 (MQ=60)
           TTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGA                                                                                    >  SRR4302533.3748733/1‑94 (MQ=60)
            TCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAG                                                                                   >  SRR4302533.3291767/1‑94 (MQ=60)
              AACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGA                                                                                 <  SRR4302533.4933708/94‑1 (MQ=60)
              AACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGA                                                                                 >  SRR4302533.286324/1‑94 (MQ=60)
               ACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAA                                                                                <  SRR4302533.2084895/94‑1 (MQ=60)
               ACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAA                                                                                <  SRR4302533.5840204/94‑1 (MQ=60)
                 CGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACA                                                                              <  SRR4302533.5705746/94‑1 (MQ=60)
                   CAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAG                                                                            >  SRR4302533.2257887/1‑94 (MQ=60)
                   CAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAG                                                                            >  SRR4302533.2470062/1‑94 (MQ=60)
                    AATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGG                                                                           >  SRR4302533.4258359/1‑94 (MQ=60)
                    AATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGG                                                                           <  SRR4302533.1586681/94‑1 (MQ=60)
                     ATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGT                                                                          <  SRR4302533.3648318/94‑1 (MQ=60)
                     ATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGT                                                                          >  SRR4302533.3832200/1‑94 (MQ=60)
                       CGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTT                                                                        <  SRR4302533.2913912/94‑1 (MQ=60)
                        GCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT                                                                       <  SRR4302533.3891367/94‑1 (MQ=60)
                        GCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT                                                                       <  SRR4302533.1404128/94‑1 (MQ=60)
                        GCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT                                                                       <  SRR4302533.2160192/94‑1 (MQ=60)
                        GCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT                                                                       >  SRR4302533.5155833/1‑94 (MQ=60)
                         CTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTC                                                                      >  SRR4302533.3462154/1‑94 (MQ=60)
                         CTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTC                                                                      >  SRR4302533.5693191/1‑94 (MQ=60)
                            TCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCC                                                                   <  SRR4302533.3325264/94‑1 (MQ=60)
                             CAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCA                                                                  <  SRR4302533.5096379/94‑1 (MQ=60)
                                GTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCC                                                               <  SRR4302533.2314373/94‑1 (MQ=60)
                                GTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCC                                                               >  SRR4302533.4455500/1‑94 (MQ=60)
                                  TTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTG                                                             >  SRR4302533.3530186/1‑94 (MQ=60)
                                     TCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACC                                                          >  SRR4302533.147848/1‑94 (MQ=60)
                                      CGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCA                                                         >  SRR4302533.949536/1‑94 (MQ=60)
                                      CGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCA                                                         <  SRR4302533.4247720/94‑1 (MQ=60)
                                       GAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAA                                                        >  SRR4302533.2076839/1‑94 (MQ=60)
                                        AACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAT                                                       >  SRR4302533.4021314/1‑94 (MQ=60)
                                         ACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATA                                                      <  SRR4302533.3147165/94‑1 (MQ=60)
                                         ACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATA                                                      >  SRR4302533.6193807/1‑94 (MQ=60)
                                          CCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAG                                                     >  SRR4302533.1984227/1‑94 (MQ=60)
                                          CCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAG                                                     >  SRR4302533.6323078/1‑94 (MQ=60)
                                          CCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAG                                                     >  SRR4302533.41559/1‑94 (MQ=60)
                                            CATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCC                                                   <  SRR4302533.3357459/94‑1 (MQ=60)
                                             ATTATTGCGCCAGTGCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCG                                                  <  SRR4302533.5523857/94‑1 (MQ=60)
                                                  TGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACA                                             >  SRR4302533.2267672/1‑94 (MQ=60)
                                                  TGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACA                                             <  SRR4302533.938254/94‑1 (MQ=60)
                                                    CGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACA                                           >  SRR4302533.2419296/1‑94 (MQ=60)
                                                     GCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAG                                          <  SRR4302533.5895269/94‑1 (MQ=60)
                                                      CCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGG                                         >  SRR4302533.5801517/1‑94 (MQ=60)
                                                       CAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGT                                        <  SRR4302533.5359941/94‑1 (MQ=60)
                                                       CAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGT                                        <  SRR4302533.6220023/94‑1 (MQ=60)
                                                        AGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTT                                       <  SRR4302533.477490/94‑1 (MQ=60)
                                                        AGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTT                                       >  SRR4302533.2391364/1‑94 (MQ=60)
                                                        AGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTT                                       >  SRR4302533.2391213/1‑94 (MQ=60)
                                                         GTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTT                                      >  SRR4302533.5446753/1‑94 (MQ=60)
                                                         GTCCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTT                                      <  SRR4302533.2977299/94‑1 (MQ=60)
                                                          TTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTC                                     <  SRR4302533.1768755/94‑1 (MQ=60)
                                                          TTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTC                                     <  SRR4302533.2511186/94‑1 (MQ=60)
                                                          TTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTC                                     >  SRR4302533.465265/1‑94 (MQ=60)
                                                           TCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCC                                    <  SRR4302533.4988523/94‑1 (MQ=60)
                                                           TCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCC                                    >  SRR4302533.988761/1‑94 (MQ=60)
                                                             CCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGG                                  <  SRR4302533.629625/94‑1 (MQ=60)
                                                             CCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGG                                  >  SRR4302533.2241644/1‑94 (MQ=60)
                                                              CGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGA                                 >  SRR4302533.436825/1‑94 (MQ=60)
                                                               GCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGAC                                >  SRR4302533.4199725/1‑94 (MQ=60)
                                                                CACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACT                               >  SRR4302533.2192482/1‑94 (MQ=60)
                                                                CACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGACGCCACACAGGTTTCCGGACT                               >  SRR4302533.5967141/1‑94 (MQ=60)
                                                                 CCCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTG                              <  SRR4302533.1467203/94‑1 (MQ=60)
                                                                 ACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTG                              >  SRR4302533.2768826/1‑94 (MQ=60)
                                                                 ACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTG                              <  SRR4302533.2680423/94‑1 (MQ=60)
                                                                  CCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGG                             <  SRR4302533.5913293/94‑1 (MQ=60)
                                                                    GCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTC                           >  SRR4302533.4718188/1‑94 (MQ=60)
                                                                    GCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTC                           >  SRR4302533.5768645/1‑94 (MQ=60)
                                                                     CCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCA                          <  SRR4302533.3687816/94‑1 (MQ=60)
                                                                     CCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCA                          <  SRR4302533.5107933/94‑1 (MQ=60)
                                                                     CCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCA                          <  SRR4302533.5615806/94‑1 (MQ=60)
                                                                      CGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAA                         >  SRR4302533.4153329/1‑94 (MQ=60)
                                                                       GCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCCAT                        >  SRR4302533.5322847/1‑94 (MQ=60)
                                                                       GCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAAT                        >  SRR4302533.5121132/1‑94 (MQ=60)
                                                                        gtggGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATC                       <  SRR4302533.4479280/90‑1 (MQ=60)
                                                                        CTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATC                       >  SRR4302533.3599478/1‑94 (MQ=60)
                                                                        CTATGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATC                       <  SRR4302533.5835953/94‑1 (MQ=60)
                                                                         TGTGGCTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCG                      <  SRR4302533.5729565/94‑1 (MQ=60)
                                                                           TGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGAC                    >  SRR4302533.3150403/1‑94 (MQ=60)
                                                                            GGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACA                   >  SRR4302533.1750495/1‑94 (MQ=60)
                                                                            GGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACA                   >  SRR4302533.4573220/1‑94 (MQ=60)
                                                                             GTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAA                  <  SRR4302533.1858543/94‑1 (MQ=60)
                                                                             GTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAA                  >  SRR4302533.4199666/1‑94 (MQ=60)
                                                                             GATACGGCTATTCAACGTGCCAGAGAGAGTAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAA                  <  SRR4302533.936662/94‑1 (MQ=60)
                                                                               TACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAAT                <  SRR4302533.5439705/94‑1 (MQ=60)
                                                                                 CGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTT              <  SRR4302533.3411757/94‑1 (MQ=60)
                                                                                 CGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTT              <  SRR4302533.6116350/94‑1 (MQ=60)
                                                                                  GGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTC             >  SRR4302533.2797116/1‑94 (MQ=60)
                                                                                  GGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTC             >  SRR4302533.3156841/1‑94 (MQ=60)
                                                                                    CTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTT           >  SRR4302533.2992725/1‑94 (MQ=60)
                                                                                    CTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTT           >  SRR4302533.914584/1‑94 (MQ=60)
                                                                                    CTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTT           >  SRR4302533.3371640/1‑94 (MQ=60)
                                                                                    CTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTT           >  SRR4302533.2347673/1‑94 (MQ=60)
                                                                                     TATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTC          <  SRR4302533.1905847/94‑1 (MQ=60)
                                                                                     TATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTC          <  SRR4302533.1746855/94‑1 (MQ=60)
                                                                                      ATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCC         <  SRR4302533.582289/94‑1 (MQ=60)
                                                                                      ATTCAACGTGCCAGAGAGAGGAACAAGGTTTGCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCC         <  SRR4302533.2539356/94‑1 (MQ=60)
                                                                                         CAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTC      <  SRR4302533.448204/94‑1 (MQ=60)
                                                                                          AACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCG     <  SRR4302533.1345687/94‑1 (MQ=60)
                                                                                           ACGTGCCAGAGAGAGGAACAAGGTTTCCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGT    <  SRR4302533.209321/94‑1 (MQ=60)
                                                                                            CGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTT   <  SRR4302533.5110224/94‑1 (MQ=60)
                                                                                            CGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTT   <  SRR4302533.3316803/94‑1 (MQ=60)
                                                                                            CGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTT   <  SRR4302533.3919864/94‑1 (MQ=60)
                                                                                             GTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTTG  >  SRR4302533.2101467/1‑94 (MQ=60)
                                                                                             GTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTTG  >  SRR4302533.5204305/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTTG  >  NC_000913/1751235‑1751421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑