Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,756,526	A→G	V75A (GTG→GCG)	ynhG ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,756,526	0	A	G	99.6%	746.0 / NA	234	V75A (GTG→GCG)	ynhG	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (127/105); total (127/107)
Fisher's exact test for biased strand distribution p-value = 4.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 243 total aligned reads displayed.

AGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCT  >  NC_000913/1756436‑1756615

 gCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCg                                                                                        >  1:4925998/1‑93 (MQ=255)

 gCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGAAATAGTTATCGTCGTACCAGGTTTTGGCGCCg                                                                                        >  2:4503168/1‑93 (MQ=255)

  ctctGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCgg                                                                                       <  1:7347508/93‑1 (MQ=255)

  ctctGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCgg                                                                                       <  1:9609316/93‑1 (MQ=255)

   tctGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCggg                                                                                      <  2:9432262/93‑1 (MQ=255)

    ctGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCgggg                                                                                     >  1:5233397/1‑93 (MQ=255)

     tGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGc                                                                                    >  1:1093692/1‑93 (MQ=255)

      gCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCg                                                                                   >  2:9708095/1‑93 (MQ=255)

      gCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCg                                                                                   >  2:4041708/1‑93 (MQ=255)

       cAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGa                                                                                  <  1:6737228/93‑1 (MQ=255)

       cAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGa                                                                                  <  2:8778324/93‑1 (MQ=255)

         aGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGaca                                                                                >  2:2028184/1‑91 (MQ=255)

         aGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATa                                                                                <  1:7409337/93‑1 (MQ=255)

         aGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATa                                                                                >  2:3748064/1‑93 (MQ=255)

         aGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATa                                                                                >  2:5867785/1‑93 (MQ=255)

           gTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAgt                                                                              <  1:4363659/93‑1 (MQ=255)

               aCGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTa                                                                          >  1:9864793/1‑93 (MQ=255)

               aCGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTa                                                                          >  1:7379434/1‑93 (MQ=255)

                 gATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTAtt                                                                        <  1:2222054/93‑1 (MQ=255)

                   tAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTgg                                                                      <  1:3264689/93‑1 (MQ=255)

                      tCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCtt                                                                   >  1:4751684/1‑93 (MQ=255)

                      tCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCtt                                                                   <  1:4949427/93‑1 (MQ=255)

                      tCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCtt                                                                   <  1:9488472/93‑1 (MQ=255)

                       ccccTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTc                                                                  <  2:800256/93‑1 (MQ=255)

                        cccTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCa                                                                 <  2:5348050/93‑1 (MQ=255)

                        cccTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCa                                                                 >  2:9122987/1‑93 (MQ=255)

                          cTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAg                                                               >  2:2927683/1‑93 (MQ=255)

                          cTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAg                                                               >  2:7658105/1‑93 (MQ=255)

                           tGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAgg                                                              <  1:7959660/93‑1 (MQ=255)

                           tGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAgg                                                              >  2:5934585/1‑93 (MQ=255)

                           tGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAgg                                                              >  2:4611747/1‑93 (MQ=255)

                            gACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGa                                                             <  1:1427201/93‑1 (MQ=255)

                            gACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGa                                                             >  1:6999032/1‑93 (MQ=255)

                            gACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGa                                                             <  1:5464122/93‑1 (MQ=255)

                            gACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGa                                                             >  2:560212/1‑93 (MQ=255)

                               gcgGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCa                                                          <  2:6767503/93‑1 (MQ=255)

                                  gTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACa                                                       >  1:2829416/1‑93 (MQ=255)

                                    gCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACAtt                                                     >  1:9311880/1‑93 (MQ=255)

                                      aTCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGc                                                   <  2:3113668/93‑1 (MQ=255)

                                      aTCAGGAAATAACAGTTGTGAAGGAATAAATATCGTCCTAACAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGc                                                   >  2:8467019/1‑93 (MQ=255)

                                       tCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGcc                                                  <  2:6323328/93‑1 (MQ=255)

                                        cAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCg                                                 <  1:9983505/93‑1 (MQ=255)

                                         aGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGc                                                <  1:4150968/93‑1 (MQ=255)

                                           gTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAg                                              >  1:6102082/1‑93 (MQ=255)

                                           gTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAg                                              >  2:423790/1‑93 (MQ=255)

                                            taataaCAGTTGTGAAGGAATAGTTATCGTCGTACCTGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGt                                             <  1:9715748/93‑1 (MQ=255)

                                            taataaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGt                                             >  2:7296707/1‑93 (MQ=255)

                                            taataaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAACGATCAACATTCCCGCAGt                                             >  1:933642/1‑93 (MQ=255)

                                            taataaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTAGCTTCAAGGATCAACATTGCCGCAGt                                             >  1:8820560/1‑93 (MQ=255)

                                             aataaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTa                                            >  1:3340560/1‑93 (MQ=255)

                                                aaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCa                                         >  2:6184144/1‑93 (MQ=255)

                                                aaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCa                                         >  2:3979080/1‑93 (MQ=255)

                                                  cAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCaaa                                       >  2:5467729/1‑93 (MQ=255)

                                                    gTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAAc                                     <  1:1605997/93‑1 (MQ=255)

                                                       gtgAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTc                                  >  1:8723606/1‑93 (MQ=255)

                                                       gtgAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTc                                  <  1:6611420/93‑1 (MQ=255)

                                                         gAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCgg                                <  1:521321/93‑1 (MQ=255)

                                                          aaGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCggg                               <  1:6124819/93‑1 (MQ=255)

                                                            ggAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCa                             >  1:8544683/1‑93 (MQ=255)

                                                            ggAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCa                             >  2:758369/1‑93 (MQ=255)

                                                             gAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCGAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCaa                            >  2:2581488/1‑93 (MQ=255)

                                                             gAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCaa                            >  1:3022490/1‑93 (MQ=255)

                                                             gAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCaa                            <  1:7855779/93‑1 (MQ=255)

                                                              aaTAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAAt                           <  2:2247104/93‑1 (MQ=255)

                                                               aTAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTTTTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATa                          >  2:7787429/1‑93 (MQ=255)

                                                               aTAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCaaaa                          >  1:5786443/1‑91 (MQ=255)

                                                               aTAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATa                          >  1:3636010/1‑93 (MQ=255)

                                                               aTAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATa                          >  2:1281262/1‑93 (MQ=255)

                                                                 aGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGc                        >  1:4198451/1‑93 (MQ=255)

                                                                  gTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAAAGTCGGGCAATAGcc                       >  2:7720539/1‑93 (MQ=255)

                                                                   ttATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCt                      >  1:821006/1‑93 (MQ=255)

                                                                   ttATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCt                      <  1:5305365/93‑1 (MQ=255)

                                                                   ttATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCt                      >  2:6042797/1‑93 (MQ=255)

                                                                   ttATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCt                      <  2:5109289/93‑1 (MQ=255)

                                                                    tATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTg                     >  2:9355675/1‑93 (MQ=255)

                                                                    tATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTg                     <  1:1716733/93‑1 (MQ=255)

                                                                      tcgtcgTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGaa                   >  2:5100173/1‑93 (MQ=255)

                                                                      tcgtcgTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGaa                   <  1:2702922/93‑1 (MQ=255)

                                                                      tcgtcgTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGaa                   <  2:6627715/93‑1 (MQ=255)

                                                                      tcgtcgTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGaa                   >  2:1691250/1‑93 (MQ=255)

                                                                         tcgtACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGt                >  2:7437873/1‑93 (MQ=255)

                                                                         tcgtACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGt                >  1:2917917/1‑93 (MQ=255)

                                                                           gtACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGttt              >  2:9174595/1‑93 (MQ=255)

                                                                            tACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGtttt             <  2:1183649/93‑1 (MQ=255)

                                                                             aCCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGttttt            <  1:2073715/93‑1 (MQ=255)

                                                                              ccAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTa           >  2:1947421/1‑93 (MQ=255)

                                                                               cAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGtttttct          <  2:7025378/93‑3 (MQ=255)

                                                                               cAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTAt          >  1:4664988/1‑93 (MQ=255)

                                                                                aGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATc         >  2:49924/1‑93 (MQ=255)

                                                                                 ggTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATATCCTGAAGGTTTTTATcc        >  1:8969067/1‑93 (MQ=255)

                                                                                 ggTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATcc        <  2:489431/93‑1 (MQ=255)

                                                                                  gTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATccc       >  2:3578721/1‑93 (MQ=255)

                                                                                  gTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATccc       >  1:9443079/1‑93 (MQ=255)

                                                                                  gTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATccc       >  1:1498560/1‑93 (MQ=255)

                                                                                   ttttGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATcccc      <  2:9773350/93‑1 (MQ=255)

                                                                                   ttttGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATcccc      >  2:2642973/1‑93 (MQ=255)

                                                                                    tttGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCct     <  1:9017950/93‑1 (MQ=255)

                                                                                     ttGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCctt    >  2:7058348/1‑93 (MQ=255)

                                                                                     ttGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCctt    <  1:9153156/93‑1 (MQ=255)

                                                                                       ggCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCcttct  <  2:8759338/93‑1 (MQ=255)

AGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCT  >  NC_000913/1756436‑1756615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGCA  >  NC_000913/1756433‑1756619

CGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCG                                                                                               <  SRR4302540.6683564/94‑1 (MQ=60)

  CAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCC                                                                                             <  SRR4302540.7970472/94‑1 (MQ=60)

  CAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCC                                                                                             >  SRR4302540.494671/1‑94 (MQ=60)

   AGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCG                                                                                            >  SRR4302540.4979087/1‑94 (MQ=60)

   AGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCG                                                                                            >  SRR4302540.4979086/1‑94 (MQ=60)

     CTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGG                                                                                          <  SRR4302540.7429484/94‑1 (MQ=60)

     CTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGG                                                                                          <  SRR4302540.9722626/94‑1 (MQ=60)

      TCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGG                                                                                         >  SRR4302540.5289541/1‑94 (MQ=60)

      TCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGG                                                                                         >  SRR4302540.5290482/1‑94 (MQ=60)

       CTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGC                                                                                        >  SRR4302540.3923718/1‑94 (MQ=60)

       CTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGC                                                                                        >  SRR4302540.1104931/1‑94 (MQ=60)

       CTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGC                                                                                        >  SRR4302540.2868345/1‑94 (MQ=60)

        TGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCG                                                                                       >  SRR4302540.9710560/1‑94 (MQ=60)

          CAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGAT                                                                                     <  SRR4302540.6811643/94‑1 (MQ=60)

          CAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGAT                                                                                     <  SRR4302540.2144464/94‑1 (MQ=60)

          CAAGGGGAACGATAATCCCCTGACGCGGTGCATCATGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCCCCGGGGCGAT                                                                                     <  SRR4302540.6811644/94‑1 (MQ=60)

           AAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATA                                                                                    >  SRR4302540.7449669/1‑94 (MQ=60)

            AGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAG                                                                                   <  SRR4302540.7491868/94‑1 (MQ=60)

            AGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAG                                                                                   <  SRR4302540.9124244/94‑1 (MQ=60)

              GTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTG                                                                                 <  SRR4302540.4411094/94‑1 (MQ=60)

               TTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGT                                                                                <  SRR4302540.4476728/94‑1 (MQ=60)

               TTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGT                                                                                >  SRR4302540.3465971/1‑94 (MQ=60)

               TTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGT                                                                                <  SRR4302540.4750961/94‑1 (MQ=60)

                 AACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTA                                                                              >  SRR4302540.9980031/1‑94 (MQ=60)

                 AACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTA                                                                              >  SRR4302540.7461665/1‑94 (MQ=60)

                  ACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTAT                                                                             <  SRR4302540.1337011/94‑1 (MQ=60)

                   CGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATT                                                                            <  SRR4302540.1494102/94‑1 (MQ=60)

                    GATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTG                                                                           <  SRR4302540.2246008/94‑1 (MQ=60)

                    GATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTG                                                                           >  SRR4302540.9941358/1‑94 (MQ=60)

                      TAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGC                                                                         <  SRR4302540.3300310/94‑1 (MQ=60)

                      TAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGC                                                                         >  SRR4302540.9902046/1‑94 (MQ=60)

                      TAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGC                                                                         >  SRR4302540.2532775/1‑94 (MQ=60)

                        ATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTT                                                                       <  SRR4302540.5387489/94‑1 (MQ=60)

                        ATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTT                                                                       >  SRR4302540.4802393/1‑94 (MQ=60)

                         TCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTC                                                                      <  SRR4302540.5002890/94‑1 (MQ=60)

                         TCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTC                                                                      <  SRR4302540.9600959/94‑1 (MQ=60)

                            CCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAG                                                                   <  SRR4302540.3203375/94‑1 (MQ=60)

                             CTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGG                                                                  >  SRR4302540.1607880/1‑94 (MQ=60)

                              TGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGA                                                                 >  SRR4302540.7076705/1‑94 (MQ=60)

                              TGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGA                                                                 <  SRR4302540.8052428/94‑1 (MQ=60)

                               GACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGAT                                                                <  SRR4302540.5524263/94‑1 (MQ=60)

                               GACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGAT                                                                <  SRR4302540.1442653/94‑1 (MQ=60)

                                 CGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCA                                                              >  SRR4302540.9428750/1‑94 (MQ=60)

                                   CGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAAC                                                            >  SRR4302540.9592180/1‑94 (MQ=60)

                                    GGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACA                                                           >  SRR4302540.6696367/1‑94 (MQ=60)

                                    GGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACA                                                           >  SRR4302540.8938486/1‑94 (MQ=60)

                                    GGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACA                                                           >  SRR4302540.2860015/1‑94 (MQ=60)

                                      TGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATT                                                         <  SRR4302540.616973/94‑1 (MQ=60)

                                      TGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATT                                                         >  SRR4302540.9423035/1‑94 (MQ=60)

                                       GCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTG                                                        <  SRR4302540.7367524/94‑1 (MQ=60)

                                         ATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCC                                                      <  SRR4302540.2639277/94‑1 (MQ=60)

                                         ATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCC                                                      >  SRR4302540.9522246/1‑94 (MQ=60)

                                         ATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCC                                                      >  SRR4302540.9514127/1‑94 (MQ=60)

                                          TCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCG                                                     >  SRR4302540.7326344/1‑94 (MQ=60)

                                           CAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGC                                                    <  SRR4302540.10099904/94‑1 (MQ=60)

                                            AGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCA                                                   <  SRR4302540.5303872/94‑1 (MQ=60)

                                            AGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCA                                                   <  SRR4302540.4195919/94‑1 (MQ=60)

                                            AGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCA                                                   <  SRR4302540.8101745/94‑1 (MQ=60)

                                             GGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAG                                                  >  SRR4302540.6170027/1‑94 (MQ=60)

                                              GTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGT                                                 <  SRR4302540.2959321/94‑1 (MQ=60)

                                              GTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAACGATCAACATTCCCGCAGT                                                 >  SRR4302540.943438/1‑94 (MQ=60)

                                              GTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTAGCTTCAAGGATCAACATTGCCGCAGT                                                 >  SRR4302540.8922551/1‑94 (MQ=60)

                                               TAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCTGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTA                                                <  SRR4302540.9829905/94‑1 (MQ=60)

                                               TAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTA                                                <  SRR4302540.4849385/94‑1 (MQ=60)

                                               TAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTA                                                >  SRR4302540.3377224/1‑94 (MQ=60)

                                               TAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTA                                                >  SRR4302540.4145059/1‑94 (MQ=60)

                                                     CAGTTGTGAAGGAATAGTTATAGTCGTACGAGGGTTTGGCGCCGGGGCGATAGGGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAA                                          >  SRR4302540.3802080/1‑94 (MQ=60)

                                                      AGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAAC                                         >  SRR4302540.52468/1‑94 (MQ=60)

                                                       GTTGTGAAGGAATAGTTATCGTCGTGCCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACG                                        <  SRR4302540.3371428/94‑1 (MQ=60)

                                                       GTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACG                                        >  SRR4302540.8694925/1‑94 (MQ=60)

                                                       GTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACG                                        >  SRR4302540.8694931/1‑94 (MQ=60)

                                                       GTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACG                                        <  SRR4302540.1651620/94‑1 (MQ=60)

                                                       GTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACG                                        <  SRR4302540.1623574/94‑1 (MQ=60)

                                                       GTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACG                                        <  SRR4302540.9773742/94‑1 (MQ=60)

                                                        TTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGT                                       <  SRR4302540.9214428/94‑1 (MQ=60)

                                                         TGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGTATCAACATTGCCGCAGTATCAAAACGTC                                      <  SRR4302540.2965020/94‑1 (MQ=60)

                                                         TGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTC                                      >  SRR4302540.8824900/1‑94 (MQ=60)

                                                          GTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCG                                     <  SRR4302540.6684626/94‑1 (MQ=60)

                                                            GAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGG                                   <  SRR4302540.7481716/94‑1 (MQ=60)

                                                            GAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGG                                   <  SRR4302540.526914/94‑1 (MQ=60)

                                                             AAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGC                                  <  SRR4302540.6193037/94‑1 (MQ=60)

                                                              AGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCA                                 >  SRR4302540.8643961/1‑94 (MQ=60)

                                                              AGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTAGGGCA                                 >  SRR4302540.4196969/1‑94 (MQ=60)

                                                               GGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAA                                >  SRR4302540.9187160/1‑94 (MQ=60)

                                                               GGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAA                                >  SRR4302540.3055705/1‑94 (MQ=60)

                                                                GAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAAT                               >  SRR4302540.5725121/1‑94 (MQ=60)

                                                                GAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAAT                               <  SRR4302540.7947572/94‑1 (MQ=60)

                                                                 AATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATA                              >  SRR4302540.3675813/1‑94 (MQ=60)

                                                                 AATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATA                              >  SRR4302540.1951529/1‑94 (MQ=60)

                                                                 AATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAAAA                              >  SRR4302540.5850367/1‑94 (MQ=60)

                                                                  ATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAG                             <  SRR4302540.1614285/94‑1 (MQ=60)

                                                                  ATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAC                             >  SRR4302540.8880733/1‑94 (MQ=60)

                                                                   TAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGC                            >  SRR4302540.4244129/1‑94 (MQ=60)

                                                                   TAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGC                            <  SRR4302540.449345/94‑1 (MQ=60)

                                                                    AGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCC                           <  SRR4302540.2753599/94‑1 (MQ=60)

                                                                     GTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCT                          >  SRR4302540.829733/1‑94 (MQ=60)

                                                                     GTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCT                          <  SRR4302540.7538219/94‑1 (MQ=60)

                                                                      TTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTG                         <  SRR4302540.3342647/94‑1 (MQ=60)

                                                                      TTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTG                         <  SRR4302540.5363419/94‑1 (MQ=60)

                                                                       TATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGA                        <  SRR4302540.1735269/94‑1 (MQ=60)

                                                                       TATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGA                        <  SRR4302540.9671387/94‑1 (MQ=60)

                                                                       TATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGA                        >  SRR4302540.10064241/1‑94 (MQ=60)

                                                                         TCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAG                      <  SRR4302540.2732084/94‑1 (MQ=60)

                                                                         TCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAG                      <  SRR4302540.932629/94‑1 (MQ=60)

                                                                          CGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGG                     >  SRR4302540.2087587/1‑94 (MQ=60)

                                                                           GTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGT                    >  SRR4302540.2949859/1‑94 (MQ=60)

                                                                           GTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGT                    <  SRR4302540.6035081/94‑1 (MQ=60)

                                                                              GTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTT                 >  SRR4302540.8975603/1‑94 (MQ=60)

                                                                                ACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTA               <  SRR4302540.4319132/94‑1 (MQ=60)

                                                                                ACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTA               <  SRR4302540.2096012/94‑1 (MQ=60)

                                                                                 CCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTAT              >  SRR4302540.4714928/1‑94 (MQ=60)

                                                                                 CCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTAT              >  SRR4302540.8354650/1‑94 (MQ=60)

                                                                                 CCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTAT              <  SRR4302540.6597865/94‑1 (MQ=60)

                                                                                   AGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATATCCTGAAGGTTTTTATCC            >  SRR4302540.9075476/1‑94 (MQ=60)

                                                                                   AGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCC            >  SRR4302540.5385962/1‑94 (MQ=60)

                                                                                    GGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCC           >  SRR4302540.1515071/1‑94 (MQ=60)

                                                                                    GGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCC           >  SRR4302540.6152281/1‑94 (MQ=60)

                                                                                    GGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCC           <  SRR4302540.7487389/94‑1 (MQ=60)

                                                                                    GGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCC           >  SRR4302540.9555197/1‑94 (MQ=60)

                                                                                     GTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCTGGCAATAGCCTGAAGGTTTTTATCCCT          >  SRR4302540.7975094/1‑94 (MQ=60)

                                                                                     GTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCC          >  SRR4302540.7975093/1‑94 (MQ=60)

                                                                                     GTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCC          <  SRR4302540.5038740/94‑1 (MQ=60)

                                                                                       TTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTT        <  SRR4302540.9126158/94‑1 (MQ=60)

                                                                                        TTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTC       <  SRR4302540.9263051/94‑1 (MQ=60)

                                                                                          GGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTT     <  SRR4302540.6359081/94‑1 (MQ=60)

                                                                                           GCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTG    <  SRR4302540.2199125/94‑1 (MQ=60)

                                                                                           GCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTG    >  SRR4302540.7352265/1‑94 (MQ=60)

                                                                                           GCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTG    <  SRR4302540.3936916/94‑1 (MQ=60)

                                                                                            CGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGC   >  SRR4302540.6941773/1‑94 (MQ=60)

                                                                                             GCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGCA  <  SRR4302540.7247857/94‑1 (MQ=60)

CGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGCA  >  NC_000913/1756433‑1756619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`