Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,762,307	T→C	Q35R (CAG→CGG)	ydiC ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,762,307	0	T	C	100.0%	833.7 / NA	260	Q35R (CAG→CGG)	ydiC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (158/102); total (158/102)

Only 100 of 269 total aligned reads displayed.

TTGTCCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCTGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCT  >  NC_000913/1762217‑1762396

  gTCCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCtt                                                                                       >  1:8901982/1‑93 (MQ=255)

     cGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGc                                                                                    >  1:7365946/1‑93 (MQ=255)

      ggCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGcc                                                                                   >  2:9515726/1‑93 (MQ=255)

         tCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGccacc                                                                                >  1:5875219/1‑93 (MQ=255)

          cGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGccacca                                                                               >  2:8763691/1‑93 (MQ=255)

           gCTAACACTGTCGAGCACATAGCCAAGGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAg                                                                              <  2:2078101/93‑1 (MQ=255)

            cTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGc                                                                             >  1:7306973/1‑93 (MQ=255)

            cTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGc                                                                             >  2:1902796/1‑93 (MQ=255)

            cTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGc                                                                             >  2:8591268/1‑93 (MQ=255)

            cTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGc                                                                             <  1:5209242/93‑1 (MQ=255)

             tAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCt                                                                            <  1:4629229/93‑1 (MQ=255)

             tAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCCGCCGCTTTGCCACCAGcc                                                                            >  1:5611820/1‑92 (MQ=255)

              aaCACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTc                                                                           >  2:391739/1‑93 (MQ=255)

               acacTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCa                                                                          <  2:4445797/93‑1 (MQ=255)

                cacTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCAc                                                                         >  1:9373985/1‑93 (MQ=255)

                cacTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCAc                                                                         >  2:2683401/1‑93 (MQ=255)

                cacTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCAc                                                                         <  1:7179456/93‑1 (MQ=255)

                 ccTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACg                                                                        <  1:6305304/92‑1 (MQ=255)

                 acTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACg                                                                        <  1:6128237/93‑1 (MQ=255)

                 acTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACg                                                                        >  2:8529306/1‑93 (MQ=255)

                  cTGTCGAGCACATCGCCAAAGACCGCGCAGCCCGTTTGCTTCACGCCTCAGCGCAGGCCGACCATACCCGGACGCTTTGGCACTAGCTCACgg                                                                       >  2:7000414/1‑93 (MQ=255)

                  cTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACgg                                                                       >  1:8172750/1‑93 (MQ=255)

                    gTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGAt                                                                     >  1:9477877/1‑93 (MQ=255)

                      cGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGAtgt                                                                   >  1:4094214/1‑93 (MQ=255)

                          cacaTAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTAt                                                               >  2:5745688/1‑93 (MQ=255)

                          cacaTAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTAt                                                               <  1:3015718/93‑1 (MQ=255)

                           ccaTAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATc                                                              <  1:3285268/92‑1 (MQ=255)

                           acaTAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATc                                                              <  2:7581187/93‑1 (MQ=255)

                           acaTAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATc                                                              <  1:9251770/93‑1 (MQ=255)

                           acaTAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATc                                                              <  1:3126726/93‑1 (MQ=255)

                           acaTAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATc                                                              <  2:1378500/93‑1 (MQ=255)

                           acaTAGCCAAAGCCCGCGCAGCCAGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCAACCAGATCACGGATGTGTATc                                                              <  2:7166963/93‑1 (MQ=255)

                              tAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATcgcc                                                           >  2:1501215/1‑93 (MQ=255)

                              tAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATcgcc                                                           >  1:9576974/1‑93 (MQ=255)

                              tAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATcgcc                                                           <  2:9581237/93‑1 (MQ=255)

                              tAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATcgcc                                                           >  2:7043080/1‑93 (MQ=255)

                              tAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATcgcc                                                           >  2:9022888/1‑93 (MQ=255)

                               aGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATcgccc                                                          >  1:2389051/1‑92 (MQ=255)

                                gCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATcgccgc                                                         <  2:7251776/93‑1 (MQ=255)

                                gCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATcgccgc                                                         <  2:8050616/93‑1 (MQ=255)

                                gCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATcgccgc                                                         <  2:5488412/93‑1 (MQ=255)

                                  cAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGGTCACTCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTg                                                       <  2:8240437/93‑1 (MQ=255)

                                  cAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTg                                                       >  1:8022995/1‑93 (MQ=255)

                                   aaaGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGc                                                      >  1:3262654/1‑93 (MQ=255)

                                     aGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCgg                                                    >  2:1129772/1‑93 (MQ=255)

                                     aGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCgg                                                    >  1:2915134/1‑93 (MQ=255)

                                      acccGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATCCCCGGCCGCTTTGCCACCAGCTCACGGATGTGTTTCGCCGCTGCggg                                                   <  2:7689569/92‑1 (MQ=255)

                                         cgcgCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGgtgt                                                <  1:7861091/93‑1 (MQ=255)

                                          gcgcAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTc                                               <  2:2488720/93‑1 (MQ=255)

                                          gcgcAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTc                                               <  1:3681615/93‑1 (MQ=255)

                                          gcgcAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTc                                               <  1:6037742/93‑1 (MQ=255)

                                            gcAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAg                                             >  2:3503336/1‑93 (MQ=255)

                                             cAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCGGc                                            <  2:9859120/93‑1 (MQ=255)

                                              aGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCg                                           >  2:5386658/1‑93 (MQ=255)

                                                 ctgTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTa                                        >  2:4919245/3‑93 (MQ=255)

                                                 ccGTTTGCTTCACTCATAAGCGCTCGCCGCCCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTa                                        <  2:6385991/93‑1 (MQ=255)

                                                  cGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTaa                                       >  1:2511230/1‑93 (MQ=255)

                                                   gTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGGCGCTGCGGGTGTCAGCGTTAAg                                      >  2:5582795/1‑93 (MQ=255)

                                                    tttGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGc                                     >  1:195663/1‑93 (MQ=255)

                                                    tttGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGc                                     >  1:4348797/1‑93 (MQ=255)

                                                    tttGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGc                                     >  2:5969343/1‑93 (MQ=255)

                                                    tttGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGc                                     >  1:5495675/1‑93 (MQ=255)

                                                      tGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCt                                   <  2:1410817/93‑1 (MQ=255)

                                                       gCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCtt                                  <  1:1087002/93‑1 (MQ=255)

                                                        cTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTg                                 <  2:8328336/93‑1 (MQ=255)

                                                          tCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGcc                               >  1:1194180/1‑93 (MQ=255)

                                                          tCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGcc                               <  1:407125/93‑1 (MQ=255)

                                                           cACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCa                              >  2:6531751/1‑93 (MQ=255)

                                                           cACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCa                              <  2:5109696/93‑1 (MQ=255)

                                                            cggCCTACGGGCAGGCCGACCATTCCCGGCCGCTAGCCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAg                             <  2:7528765/91‑1 (MQ=255)

                                                            aCGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAg                             >  2:9627830/1‑93 (MQ=255)

                                                               ccTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCg                          >  1:4800329/1‑93 (MQ=255)

                                                                 tAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTTTCAGCGTTAAGCCTTGCCAGGCGaa                        >  2:4526775/1‑93 (MQ=255)

                                                                 tAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGaa                        >  1:2961595/1‑93 (MQ=255)

                                                                 tAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGaa                        >  1:2132645/1‑93 (MQ=255)

                                                                 tAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGaa                        >  1:3972531/1‑93 (MQ=255)

                                                                     cgcACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGGGTCAGCGTTAAGCCTTGCCAGGCGAAATCt                    >  1:8643206/1‑93 (MQ=255)

                                                                       cACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTtg                  >  1:4463249/1‑93 (MQ=255)

                                                                        ccGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTtgt                 <  2:8907207/92‑1 (MQ=255)

                                                                        aCGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTtgt                 >  1:5077870/1‑93 (MQ=255)

                                                                         cGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTtgtg                >  2:6784938/1‑93 (MQ=255)

                                                                         cGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTtgtg                >  1:9043285/1‑93 (MQ=255)

                                                                            cGACCATCCCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGt             <  2:4294139/93‑1 (MQ=255)

                                                                            cGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGt             <  1:2010107/93‑1 (MQ=255)

                                                                            cGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGt             <  2:9276944/93‑1 (MQ=255)

                                                                            cGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGt             <  1:8761157/93‑1 (MQ=255)

                                                                            cGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGt             >  1:9746847/1‑93 (MQ=255)

                                                                             gACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGtt            >  1:8300020/1‑93 (MQ=255)

                                                                             gACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGGGTCAGCGGTAAGACTTGCCAGGCGAAATCTTGTGGGtt            >  1:164502/1‑93 (MQ=255)

                                                                               ccATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTaa          >  1:9994829/1‑93 (MQ=255)

                                                                                 aTACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAg        <  2:2372212/93‑1 (MQ=255)

                                                                                 aTACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAg        >  1:4542028/1‑93 (MQ=255)

                                                                                 aTACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAg        >  2:230607/1‑93 (MQ=255)

                                                                                 aTACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAg        >  2:3683778/1‑93 (MQ=255)

                                                                                   gcccGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGCGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGt      <  2:6000550/92‑1 (MQ=255)

                                                                                    cccGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGtt     <  2:4729765/93‑1 (MQ=255)

                                                                                     ccGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTc    >  1:6754592/1‑93 (MQ=255)

                                                                                      cGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTcc   >  2:686925/1‑93 (MQ=255)

                                                                                      cGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTcc   <  1:7891651/93‑1 (MQ=255)

                                                                                       ggCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCt  <  2:8115063/93‑1 (MQ=255)

TTGTCCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCTGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCT  >  NC_000913/1762217‑1762396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTTTGTCCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCTGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAAT  >  NC_000913/1762215‑1762400

CTTTGTCCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCG                                                                                              >  SRR4302540.4065242/1‑94 (MQ=60)

 TTTGTCCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGC                                                                                             >  SRR4302540.7863370/1‑94 (MQ=60)

   TGTCCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTT                                                                                           >  SRR4302540.9010348/1‑94 (MQ=60)

   TGTCCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTT                                                                                           >  SRR4302540.9005033/1‑94 (MQ=60)

   TGTCCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTT                                                                                           <  SRR4302540.8097477/94‑1 (MQ=60)

    GTCCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTT                                                                                          >  SRR4302540.1985200/1‑94 (MQ=60)

      CCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGC                                                                                        >  SRR4302540.7448070/1‑94 (MQ=60)

       CGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCC                                                                                       <  SRR4302540.1293263/94‑1 (MQ=60)

          CTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACC                                                                                    >  SRR4302540.5940164/1‑94 (MQ=60)

           TCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCA                                                                                   >  SRR4302540.120590/1‑94 (MQ=60)

             GCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGC                                                                                 >  SRR4302540.7388547/1‑94 (MQ=60)

             GCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGC                                                                                 >  SRR4302540.7119058/1‑94 (MQ=60)

              CTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCT                                                                                <  SRR4302540.9841335/94‑1 (MQ=60)

              CTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCT                                                                                <  SRR4302540.5265993/94‑1 (MQ=60)

              CTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCCGCCGCTTTGCCACCAGCC                                                                                >  SRR4302540.5673553/1‑94 (MQ=60)

               TAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTC                                                                               <  SRR4302540.4678816/94‑1 (MQ=60)

                 ACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCAC                                                                             >  SRR4302540.9485581/1‑94 (MQ=60)

                  CACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACG                                                                            <  SRR4302540.7259494/94‑1 (MQ=60)

                  CACTGTCGACCACAGAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATCCCCGGCCGCTTTGCCACCAGCTCACG                                                                            <  SRR4302540.1021547/94‑1 (MQ=60)

                   CCTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGG                                                                           <  SRR4302540.6375517/94‑1 (MQ=60)

                   ACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGG                                                                           >  SRR4302540.5076694/1‑94 (MQ=60)

                   ACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGG                                                                           <  SRR4302540.6196494/94‑1 (MQ=60)

                   ACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGG                                                                           >  SRR4302540.8267676/1‑94 (MQ=60)

                   ACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGG                                                                           <  SRR4302540.6196495/94‑1 (MQ=60)

                     TGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGAT                                                                         >  SRR4302540.9590274/1‑94 (MQ=60)

                     TGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGAT                                                                         >  SRR4302540.9590273/1‑94 (MQ=60)

                     TGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGAT                                                                         >  SRR4302540.9246287/1‑94 (MQ=60)

                       TCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGT                                                                       >  SRR4302540.4138382/1‑94 (MQ=60)

                       TCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGT                                                                       >  SRR4302540.4138383/1‑94 (MQ=60)

                            CACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATC                                                                  >  SRR4302540.8646715/1‑94 (MQ=60)

                            CACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATC                                                                  <  SRR4302540.3048875/94‑1 (MQ=60)

                            CACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATC                                                                  <  SRR4302540.9441461/94‑1 (MQ=60)

                            CACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATC                                                                  <  SRR4302540.24187/94‑1 (MQ=60)

                             CCATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCG                                                                 <  SRR4302540.3321184/94‑1 (MQ=60)

                             ACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCG                                                                 <  SRR4302540.9362511/94‑1 (MQ=60)

                             ACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCG                                                                 <  SRR4302540.3160866/94‑1 (MQ=60)

                             ACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCG                                                                 >  SRR4302540.5815500/1‑94 (MQ=60)

                             ACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCG                                                                 >  SRR4302540.2905708/1‑94 (MQ=60)

                              CATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGC                                                                >  SRR4302540.4707689/1‑94 (MQ=60)

                              CATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGC                                                                >  SRR4302540.5521718/1‑94 (MQ=60)

                               ATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCC                                                               >  SRR4302540.9690078/1‑94 (MQ=60)

                                TAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCC                                                              >  SRR4302540.2414801/1‑94 (MQ=60)

                                  GCCAAAGCCCGCGCAGACCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCT                                                            <  SRR4302540.3314553/94‑1 (MQ=60)

                                   CCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTG                                                           >  SRR4302540.8116303/1‑94 (MQ=60)

                                   CCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTG                                                           >  SRR4302540.3052133/1‑94 (MQ=60)

                                   CCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTG                                                           >  SRR4302540.3735488/1‑94 (MQ=60)

                                    CAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGC                                                          >  SRR4302540.4433020/1‑94 (MQ=60)

                                    CAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGC                                                          <  SRR4302540.8453396/94‑1 (MQ=60)

                                    CAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGC                                                          >  SRR4302540.3298256/1‑94 (MQ=60)

                                      AAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGG                                                        >  SRR4302540.2947028/1‑94 (MQ=60)

                                      AAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCCCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGG                                                        >  SRR4302540.2947029/1‑94 (MQ=60)

                                          CCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGT                                                    >  SRR4302540.1774315/1‑94 (MQ=60)

                                          CCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGT                                                    >  SRR4302540.9405663/1‑94 (MQ=60)

                                           CGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTC                                                   >  SRR4302540.526917/1‑94 (MQ=60)

                                           CGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTC                                                   <  SRR4302540.7952939/94‑1 (MQ=60)

                                           CGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTC                                                   <  SRR4302540.7952941/94‑1 (MQ=60)

                                            GCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCA                                                  <  SRR4302540.3721853/94‑1 (MQ=60)

                                            GCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCA                                                  <  SRR4302540.6104774/94‑1 (MQ=60)

                                            CCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCA                                                  <  SRR4302540.2370600/94‑1 (MQ=60)

                                              GCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTATATCGCCGCTGCGGGTGTCAGC                                                <  SRR4302540.9563608/94‑1 (MQ=60)

                                               CAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCG                                               <  SRR4302540.3048778/94‑1 (MQ=60)

                                               CAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCG                                               <  SRR4302540.2866450/94‑1 (MQ=60)

                                                AGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGT                                              >  SRR4302540.8831511/1‑94 (MQ=60)

                                                AGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGT                                              >  SRR4302540.5262273/1‑94 (MQ=60)

                                                 GCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCTCCGCTGCGGGTGTCAGCGTT                                             >  SRR4302540.4382638/1‑94 (MQ=60)

                                                   CCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCTGCTGCGGGTGTCAGCGTTAA                                           <  SRR4302540.5196022/94‑1 (MQ=60)

                                                   CCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAA                                           >  SRR4302540.2538352/1‑94 (MQ=60)

                                                   CCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGCATCGACGCCTCGGGCGTCAGCGTTAA                                           >  SRR4302540.7381586/1‑94 (MQ=60)

                                                    CGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGGCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGGTAAG                                          >  SRR4302540.4383344/1‑94 (MQ=60)

                                                    CGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAG                                          <  SRR4302540.4570453/94‑1 (MQ=60)

                                                     GTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGC                                         >  SRR4302540.197606/1‑94 (MQ=60)

                                                     GTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGC                                         >  SRR4302540.4396110/1‑94 (MQ=60)

                                                     GTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGC                                         >  SRR4302540.6822643/1‑94 (MQ=60)

                                                     GTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGC                                         >  SRR4302540.9005873/1‑94 (MQ=60)

                                                     GTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGC                                         >  SRR4302540.5556180/1‑94 (MQ=60)

                                                     GTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGGGTCAGCGTTAAGC                                         >  SRR4302540.1390483/1‑94 (MQ=60)

                                                       TTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCT                                       <  SRR4302540.3578767/94‑1 (MQ=60)

                                                        TGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTT                                      >  SRR4302540.8856763/1‑94 (MQ=60)

                                                         GCTTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTG                                     <  SRR4302540.1098149/94‑1 (MQ=60)

                                                           TTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCC                                   >  SRR4302540.9278431/1‑94 (MQ=60)

                                                           TTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCC                                   >  SRR4302540.1206481/1‑94 (MQ=60)

                                                           TTCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCC                                   >  SRR4302540.2114090/1‑94 (MQ=60)

                                                            TCACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCA                                  <  SRR4302540.411383/94‑1 (MQ=60)

                                                             TACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAG                                 <  SRR4302540.8167799/94‑1 (MQ=60)

                                                             CACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAG                                 <  SRR4302540.2049224/94‑1 (MQ=60)

                                                              ACGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGG                                <  SRR4302540.826441/94‑1 (MQ=60)

                                                               CGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGC                               <  SRR4302540.4042865/94‑1 (MQ=60)

                                                               CGCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGC                               >  SRR4302540.3127218/1‑94 (MQ=60)

                                                                GCCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCG                              >  SRR4302540.4851700/1‑94 (MQ=60)

                                                                 CCTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGA                             >  SRR4302540.66174/1‑94 (MQ=60)

                                                                  CTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAA                            >  SRR4302540.6254660/1‑94 (MQ=60)

                                                                  CTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAA                            >  SRR4302540.4015352/1‑94 (MQ=60)

                                                                  CTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAA                            >  SRR4302540.2994247/1‑94 (MQ=60)

                                                                  CTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAA                            >  SRR4302540.2994248/1‑94 (MQ=60)

                                                                  CTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAA                            >  SRR4302540.2155538/1‑94 (MQ=60)

                                                                  CTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAA                            >  SRR4302540.4827823/1‑94 (MQ=60)

                                                                  CTAAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAA                            >  SRR4302540.4015351/1‑94 (MQ=60)

                                                                    AAGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAAT                          >  SRR4302540.2232108/1‑94 (MQ=60)

                                                                     AGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGCAATC                         >  SRR4302540.6012529/1‑94 (MQ=60)

                                                                     AGCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATC                         >  SRR4302540.6012526/1‑94 (MQ=60)

                                                                      GCGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGGGTCAGCGTTAAGCCTTGCCAGGCGAAATCT                        >  SRR4302540.8743607/1‑94 (MQ=60)

                                                                       CGCACGCCGACCATACCCGGCCGCTTTGTCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGACTTGCCAGGCGAAATCCT                       >  SRR4302540.10049818/1‑94 (MQ=60)

                                                                       CGCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTT                       >  SRR4302540.3184424/1‑94 (MQ=60)

                                                                        GCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTG                      >  SRR4302540.5902997/1‑94 (MQ=60)

                                                                        GCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTG                      >  SRR4302540.8029682/1‑94 (MQ=60)

                                                                        GCACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTG                      >  SRR4302540.4511633/1‑94 (MQ=60)

                                                                         CACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGT                     <  SRR4302540.976052/94‑1 (MQ=60)

                                                                         CACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGT                     >  SRR4302540.5132771/1‑94 (MQ=60)

                                                                          ACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTG                    <  SRR4302540.618411/94‑1 (MQ=60)

                                                                          ACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTG                    >  SRR4302540.9151837/1‑94 (MQ=60)

                                                                          ACGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTG                    >  SRR4302540.4672541/1‑94 (MQ=60)

                                                                           CGCCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGG                   <  SRR4302540.8883540/94‑1 (MQ=60)

                                                                             CTGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGT                 <  SRR4302540.9595763/94‑1 (MQ=60)

                                                                             CCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGT                 >  SRR4302540.9861231/1‑94 (MQ=60)

                                                                             CCGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGT                 <  SRR4302540.7430922/94‑1 (MQ=60)

                                                                              CGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTT                <  SRR4302540.2031844/94‑1 (MQ=60)

                                                                              CGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTT                >  SRR4302540.7440876/1‑94 (MQ=60)

                                                                              CGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTT                <  SRR4302540.8862743/94‑1 (MQ=60)

                                                                              CGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTT                >  SRR4302540.8396391/1‑94 (MQ=60)

                                                                              CGACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGGGTCAGCGGTAAGACTTGCCAGGCGAAATCTTGTGGGTT                >  SRR4302540.166148/1‑94 (MQ=60)

                                                                               GCCCATACCCGGCCGCTTTGCCCCCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTA               <  SRR4302540.7542561/94‑1 (MQ=60)

                                                                               GACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTA               >  SRR4302540.6862722/1‑94 (MQ=60)

                                                                                ACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAA              >  SRR4302540.10111299/1‑94 (MQ=60)

                                                                                ACCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAA              >  SRR4302540.5592431/1‑94 (MQ=60)

                                                                                 CCATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAA             >  SRR4302540.3830360/1‑94 (MQ=60)

                                                                                  CATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAG            >  SRR4302540.4591184/1‑94 (MQ=60)

                                                                                  CATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAG            >  SRR4302540.37024/1‑94 (MQ=60)

                                                                                   ATACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGG           >  SRR4302540.4657683/1‑94 (MQ=60)

                                                                                     ACCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTT         >  SRR4302540.4491432/1‑94 (MQ=60)

                                                                                      CCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTC        >  SRR4302540.6829227/1‑94 (MQ=60)

                                                                                      CCCGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTC        >  SRR4302540.1708290/1‑94 (MQ=60)

                                                                                        CGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCT      >  SRR4302540.3236652/1‑94 (MQ=60)

                                                                                        CGGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCT      <  SRR4302540.7983750/94‑1 (MQ=60)

                                                                                         GGCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTG     >  SRR4302540.6296291/1‑94 (MQ=60)

                                                                                          GCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGGAATCTTGTGGGGTAAATGGTCCTGA    >  SRR4302540.86906/1‑94 (MQ=60)

                                                                                          GCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGA    >  SRR4302540.3469448/1‑94 (MQ=60)

                                                                                          GCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGA    <  SRR4302540.2828669/94‑1 (MQ=60)

                                                                                          GCCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGGCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGCTCCTGA    >  SRR4302540.9751928/1‑94 (MQ=60)

                                                                                           CCGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAA   >  SRR4302540.2277213/1‑94 (MQ=60)

                                                                                            CGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAAT  <  SRR4302540.362714/94‑1 (MQ=60)

                                                                                            CGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAAT  >  SRR4302540.8757953/1‑94 (MQ=60)

CTTTGTCCGGCTCGCTAACACTGTCGAGCACATAGCCAAAGCCCGCGCAGCCCGTTTGCTTCACGCCTAAGCGCACGCCGACCATACCCGGCTGCTTTGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAAT  >  NC_000913/1762215‑1762400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`