Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,765,691	A→G	V340A (GTG→GCG)	ydiJ ←	putative oxidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,765,691	0	A	G	99.5%	624.1 / ‑5.1	198	V340A (GTG→GCG)	ydiJ	putative oxidase
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (106/91); total (107/91)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01

Only 100 of 209 total aligned reads displayed.

GCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGC  >  NC_000913/1765601‑1765780

gcACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGcgca                                                                                         <  1:9634227/93‑1 (MQ=255)

gcACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGcgca                                                                                         <  1:8632064/93‑1 (MQ=255)

gcACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGcgca                                                                                         >  1:747779/1‑93 (MQ=255)

 cacaGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCAt                                                                                        >  2:7445592/1‑93 (MQ=255)

  acaGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATc                                                                                       <  1:2706282/93‑1 (MQ=255)

  acaGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATc                                                                                       <  2:7007391/93‑1 (MQ=255)

    agagTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCgg                                                                                     >  1:6880563/1‑93 (MQ=255)

     gagTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGt                                                                                    >  1:5971547/1‑93 (MQ=255)

     gagTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGt                                                                                    >  2:1768216/1‑93 (MQ=255)

     gagTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGt                                                                                    >  1:6848389/1‑93 (MQ=255)

        tGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTATTGGTCAGGCGCATCGGTAAt                                                                                 <  1:1845352/93‑1 (MQ=255)

         gCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATc                                                                                <  2:7776199/93‑1 (MQ=255)

         gCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATc                                                                                <  2:6071700/93‑1 (MQ=255)

          cATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCa                                                                               >  2:5643153/1‑93 (MQ=255)

          cATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCa                                                                               >  2:5829205/1‑93 (MQ=255)

          cATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCa                                                                               <  1:5628743/93‑1 (MQ=255)

           aTTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCaa                                                                              >  1:5982485/1‑93 (MQ=255)

             ttACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACt                                                                            >  2:2257451/1‑93 (MQ=255)

             ttACCCGCTCATCAATCAGCGCCTCATAATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACt                                                                            <  2:8702847/93‑1 (MQ=255)

              tACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTc                                                                           <  1:7807457/93‑1 (MQ=255)

               aCCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCg                                                                          >  2:4993162/1‑93 (MQ=255)

                cccGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGc                                                                         <  1:9582395/93‑1 (MQ=255)

                 ccGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCt                                                                        >  2:7426562/1‑93 (MQ=255)

                 ccGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCt                                                                        >  1:3658694/1‑93 (MQ=255)

                  cGCTCATCAATCAGCTCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTg                                                                       <  2:6897896/93‑1 (MQ=255)

                  cGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTg                                                                       <  2:3359922/93‑1 (MQ=255)

                  cGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTg                                                                       <  1:4963277/93‑1 (MQ=255)

                  cGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTg                                                                       <  1:1399268/93‑1 (MQ=255)

                  cGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTg                                                                       <  2:2994938/93‑1 (MQ=255)

                  cGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTg                                                                       <  2:9519115/93‑1 (MQ=255)

                   gCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGa                                                                      <  2:2171436/93‑1 (MQ=255)

                   gCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGa                                                                      >  1:7275708/1‑93 (MQ=255)

                    cTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGAc                                                                     >  1:1788048/1‑93 (MQ=255)

                     tcatcaATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACg                                                                    >  1:2766322/1‑93 (MQ=255)

                     tcatcaATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACg                                                                    >  2:5712155/1‑93 (MQ=255)

                     tcatcaATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCGTGGTCAGGCGCATCGGTAATCAACTCGCTGACg                                                                    <  1:7442852/93‑1 (MQ=255)

                      catcaATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACgg                                                                   >  1:9358181/1‑93 (MQ=255)

                       atcaatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGa                                                                  <  1:5422207/93‑1 (MQ=255)

                       atcaatcaGCGCCTCATCATCACAAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGa                                                                  <  2:5586111/93‑1 (MQ=255)

                        tcaatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGaa                                                                 <  1:8343693/93‑1 (MQ=255)

                        tcaatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGaa                                                                 >  1:10024600/1‑93 (MQ=255)

                         caatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAAt                                                                >  2:5699154/1‑93 (MQ=255)

                          aatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATg                                                               >  2:7483680/1‑93 (MQ=255)

                           atcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGc                                                              >  1:7685973/1‑93 (MQ=255)

                           atcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGc                                                              >  2:9510394/1‑93 (MQ=255)

                            tcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGcc                                                             >  1:5084072/1‑93 (MQ=255)

                              aGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAg                                                           >  2:8023445/1‑93 (MQ=255)

                               gcgcCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGa                                                          >  1:6598710/1‑93 (MQ=255)

                                 gcCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACa                                                        <  2:3928931/93‑1 (MQ=255)

                                   cTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAat                                                      <  1:6066273/93‑1 (MQ=255)

                                   cTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAat                                                      <  2:6603084/93‑1 (MQ=255)

                                      atcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATc                                                   <  1:3718739/93‑1 (MQ=255)

                                       tcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCt                                                  >  1:9403239/1‑93 (MQ=255)

                                       tcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCt                                                  >  2:6588008/1‑93 (MQ=255)

                                        catcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCtt                                                 <  2:5253873/93‑1 (MQ=255)

                                         atcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTc                                                >  2:861461/1‑93 (MQ=255)

                                         atcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTc                                                <  1:8903748/93‑1 (MQ=255)

                                          tcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTcc                                               >  1:6439174/1‑93 (MQ=255)

                                           caCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTccc                                              <  2:7419121/93‑1 (MQ=255)

                                             ccAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcgc                                            <  2:773425/93‑1 (MQ=255)

                                             ccAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcgc                                            <  2:2078718/93‑1 (MQ=255)

                                             ccAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcgc                                            <  1:2386223/93‑1 (MQ=255)

                                              cAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcgcg                                           >  1:3829543/1‑93 (MQ=255)

                                                gCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAAAGCCAGACAATATCTTCCCGCGcc                                         >  2:6913284/1‑93 (MQ=255)

                                                 cAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCa                                        >  2:9002866/1‑93 (MQ=255)

                                                  aaaTTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAg                                       >  1:9803847/1‑93 (MQ=255)

                                                    aTTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAt                                     >  1:4897041/1‑93 (MQ=255)

                                                     ttCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAtt                                    >  2:6630415/1‑93 (MQ=255)

                                                      tCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTc                                   >  1:9299963/1‑93 (MQ=255)

                                                       ccACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCa                                  <  1:950927/93‑1 (MQ=255)

                                                        cacaATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAg                                 >  2:6118456/1‑93 (MQ=255)

                                                          caATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCa                               >  1:3060397/1‑93 (MQ=255)

                                                          caATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCa                               >  1:2934481/1‑93 (MQ=255)

                                                          caATGTTCAGCCCGAGCATCTCTTGGCCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCa                               >  1:5786163/1‑93 (MQ=255)

                                                           aaTGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGCAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCAc                              >  1:9964637/1‑93 (MQ=255)

                                                             tGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtt                            <  2:2599142/93‑1 (MQ=255)

                                                              gTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACttt                           <  1:6499906/93‑1 (MQ=255)

                                                              gTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACttt                           >  1:4495616/1‑93 (MQ=255)

                                                               ttCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtttt                          <  1:10017323/93‑1 (MQ=255)

                                                               ttCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtttt                          >  1:8097021/1‑93 (MQ=255)

                                                                 cAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGa                        <  1:5431690/93‑1 (MQ=255)

                                                                 cAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGa                        <  1:1977600/93‑1 (MQ=255)

                                                                  aGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAg                       <  1:6237807/93‑1 (MQ=255)

                                                                   gCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGt                      >  1:3329392/1‑93 (MQ=255)

                                                                     ccGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTcc                    >  2:2616448/1‑93 (MQ=255)

                                                                     ccGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTcc                    <  2:723294/93‑1 (MQ=255)

                                                                      cGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTCTGAGTCCa                   <  2:2430690/93‑1 (MQ=255)

                                                                      cGAGAATCTCTTGGTCAGGCGCATCGGTAATCACCTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCa                   <  2:6337006/93‑1 (MQ=255)

                                                                       gAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAc                  <  1:4690788/93‑1 (MQ=255)

                                                                       gAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAc                  >  1:6336180/1‑93 (MQ=255)

                                                                         gCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCg                <  2:7938004/93‑1 (MQ=255)

                                                                            tctcTTGGTCAGGCGCATCGGTAATCAACTCGGTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtct             >  2:8414678/1‑93 (MQ=255)

                                                                            tctcTTGGTCAGGCACATCGGTAATCAACTGGATGACGGAATGCCAGCCAATATCTTCACGCGCCAGATTCAGCACTTTTGAGTCCACCGtct             >  1:5259019/1‑93 (MQ=255)

                                                                             ctctTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtctc            <  1:695984/93‑1 (MQ=255)

                                                                              tctTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTctct           >  2:9699375/1‑93 (MQ=255)

                                                                               ctTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTa          >  1:6992677/1‑93 (MQ=255)

                                                                               ctTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTa          <  2:1833934/93‑1 (MQ=255)

                                                                                ttGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTAc         <  1:4166162/93‑1 (MQ=255)

                                                                                 tGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTAcc        >  2:5219754/1‑93 (MQ=255)

                                                                                      aGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAg   >  1:4564184/1‑93 (MQ=255)

GCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGC  >  NC_000913/1765601‑1765780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCC  >  NC_000913/1765600‑1765783

CGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCA                                                                                            >  SRR4302540.755744/1‑94 (MQ=60)

CGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCA                                                                                            <  SRR4302540.9427283/94‑1 (MQ=60)

CGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCA                                                                                            <  SRR4302540.8053782/94‑1 (MQ=60)

 GCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCAT                                                                                           <  SRR4302540.9747737/94‑1 (MQ=60)

 GCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCAT                                                                                           <  SRR4302540.8732331/94‑1 (MQ=60)

 GCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCAT                                                                                           <  SRR4302540.660540/94‑1 (MQ=60)

   ACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCG                                                                                         <  SRR4302540.2735470/94‑1 (MQ=60)

    CAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGG                                                                                        >  SRR4302540.6956834/1‑94 (MQ=60)

     AGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGT                                                                                       >  SRR4302540.6037639/1‑94 (MQ=60)

     AGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGT                                                                                       >  SRR4302540.1206633/1‑94 (MQ=60)

     AGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGT                                                                                       >  SRR4302540.6037640/1‑94 (MQ=60)

     AGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGT                                                                                       >  SRR4302540.6924259/1‑94 (MQ=60)

         TTCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATC                                                                                   <  SRR4302540.8262605/94‑1 (MQ=60)

         TGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTATTGGTCAGGCGCATCGGTAATC                                                                                   <  SRR4302540.1865574/94‑1 (MQ=60)

          GCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCA                                                                                  <  SRR4302540.7445276/94‑1 (MQ=60)

           CATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAA                                                                                 >  SRR4302540.6048738/1‑94 (MQ=60)

           CATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAA                                                                                 >  SRR4302540.2688477/1‑94 (MQ=60)

           CATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAA                                                                                 <  SRR4302540.5690696/94‑1 (MQ=60)

            ATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAAC                                                                                >  SRR4302540.6213511/1‑94 (MQ=60)

             TTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACT                                                                               <  SRR4302540.8697787/94‑1 (MQ=60)

               TACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCG                                                                             <  SRR4302540.7898693/94‑1 (MQ=60)

                 CCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCT                                                                           >  SRR4302540.3698750/1‑94 (MQ=60)

                 CCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCT                                                                           <  SRR4302540.9695543/94‑1 (MQ=60)

                   CGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGA                                                                         >  SRR4302540.7356888/1‑94 (MQ=60)

                   CGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGA                                                                         <  SRR4302540.5016955/94‑1 (MQ=60)

                   CGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGA                                                                         <  SRR4302540.1414307/94‑1 (MQ=60)

                    GCTCATCAATCAGCGCCTCATCGTCACCAGCAAATTCCACAATGTTCAGGCCGAGCATCTCTTGGTCCGTCGCATCGGTAATGAACTCGCagag                                                                        >  SRR4302540.1807475/1‑90 (MQ=60)

                    GCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGAC                                                                        <  SRR4302540.274347/94‑1 (MQ=60)

                    GCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGAC                                                                        <  SRR4302540.4996826/94‑1 (MQ=60)

                    GCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGAC                                                                        >  SRR4302540.1807477/1‑94 (MQ=60)

                    GCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATAAACTCGCggag                                                                        >  SRR4302540.1807478/1‑90 (MQ=60)

                     CTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACG                                                                       >  SRR4302540.2796209/1‑94 (MQ=60)

                      TCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGG                                                                      >  SRR4302540.9469632/1‑94 (MQ=60)

                      TCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGG                                                                      >  SRR4302540.9469633/1‑94 (MQ=60)

                      TCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCGTGGTCAGGCGCATCGGTAATCAACTCGCTGACGG                                                                      <  SRR4302540.7525774/94‑1 (MQ=60)

                       CATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGA                                                                     <  SRR4302540.3423449/94‑1 (MQ=60)

                       CATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGA                                                                     >  SRR4302540.4436610/1‑94 (MQ=60)

                       CATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGA                                                                     <  SRR4302540.3423450/94‑1 (MQ=60)

                        ATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAA                                                                    >  SRR4302540.9675759/1‑94 (MQ=60)

                        ATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAA                                                                    >  SRR4302540.10141248/1‑94 (MQ=60)

                        ATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAA                                                                    >  SRR4302540.10141246/1‑94 (MQ=60)

                        ATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAA                                                                    <  SRR4302540.5481834/94‑1 (MQ=60)

                         TCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAAT                                                                   <  SRR4302540.8440537/94‑1 (MQ=60)

                           AATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGC                                                                 >  SRR4302540.7535733/1‑94 (MQ=60)

                           AATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGC                                                                 >  SRR4302540.7773155/1‑94 (MQ=60)

                            ATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCC                                                                >  SRR4302540.5139037/1‑94 (MQ=60)

                            ATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCC                                                                <  SRR4302540.5798615/94‑1 (MQ=60)

                               AGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGA                                                             >  SRR4302540.6671783/1‑94 (MQ=60)

                               AGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGA                                                             >  SRR4302540.1569960/1‑94 (MQ=60)

                                 CGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGAAGGAATGCCAGACA                                                           >  SRR4302540.6821161/1‑94 (MQ=60)

                                  GCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAA                                                          >  SRR4302540.9947714/1‑94 (MQ=60)

                                  GCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAA                                                          <  SRR4302540.9731326/94‑1 (MQ=60)

                                   CCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAAT                                                         <  SRR4302540.7568586/94‑1 (MQ=60)

                                   CCTCATCATCACCAGAAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAAT                                                         <  SRR4302540.4859337/94‑1 (MQ=60)

                                    CTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATA                                                        <  SRR4302540.6133720/94‑1 (MQ=60)

                                      CATCATCACCAGCAAATTCCACAATGTTCAGCCCGCGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATC                                                      >  SRR4302540.7164689/1‑94 (MQ=60)

                                       ATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCT                                                     >  SRR4302540.9515092/1‑94 (MQ=60)

                                       ATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCT                                                     <  SRR4302540.3759316/94‑1 (MQ=60)

                                       ATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCT                                                     >  SRR4302540.4581663/1‑94 (MQ=60)

                                       ATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCT                                                     >  SRR4302540.379110/1‑94 (MQ=60)

                                        TCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTT                                                    <  SRR4302540.5934255/94‑1 (MQ=60)

                                         CATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTC                                                   <  SRR4302540.8361167/94‑1 (MQ=60)

                                          ATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCC                                                  >  SRR4302540.6510837/1‑94 (MQ=60)

                                          ATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCC                                                  <  SRR4302540.9006835/94‑1 (MQ=60)

                                          ATCACCAGCAAATTCCACAATGGTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCC                                                  >  SRR4302540.5290955/1‑94 (MQ=60)

                                            CACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCG                                                <  SRR4302540.4138396/94‑1 (MQ=60)

                                            CACCACCAAATTCCACAATGTTCAGCCCGAGCCTTCCTTGGTCAGGCCCATCGGTAATCCACTCGCTGACGGAATGCCAGACAATATCTTCCCG                                                <  SRR4302540.8279464/94‑1 (MQ=60)

                                             ACCAGCAAATTCCACAATGTTCAGCCTGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGC                                               >  SRR4302540.9754995/1‑94 (MQ=60)

                                              CCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCG                                              >  SRR4302540.3871217/1‑94 (MQ=60)

                                              CCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCG                                              <  SRR4302540.2411940/94‑1 (MQ=60)

                                                AGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCC                                            <  SRR4302540.5559298/94‑1 (MQ=60)

                                                  CAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAG                                          <  SRR4302540.6436120/94‑1 (MQ=60)

                                                  CAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAG                                          >  SRR4302540.9918610/1‑94 (MQ=60)

                                                    AATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAT                                        >  SRR4302540.4949718/1‑94 (MQ=60)

                                                      TTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTC                                      >  SRR4302540.9411056/1‑94 (MQ=60)

                                                       TCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCA                                     <  SRR4302540.3758063/94‑1 (MQ=60)

                                                        CCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAG                                    >  SRR4302540.9567233/1‑94 (MQ=60)

                                                        CCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAG                                    <  SRR4302540.960810/94‑1 (MQ=60)

                                                         CACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGC                                   >  SRR4302540.8867565/1‑94 (MQ=60)

                                                          ACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCA                                  >  SRR4302540.2966682/1‑94 (MQ=60)

                                                          ACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCA                                  >  SRR4302540.3093971/1‑94 (MQ=60)

                                                          ACAATGTTCAGCCCGAGCATCTCTTGGCCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCA                                  >  SRR4302540.5850081/1‑94 (MQ=60)

                                                           CAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGCAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCAC                                 >  SRR4302540.10080895/1‑94 (MQ=60)

                                                              aggTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTT                              <  SRR4302540.7061345/91‑1 (MQ=60)

                                                              TGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTT                              >  SRR4302540.4544358/1‑94 (MQ=60)

                                                               GTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTT                             >  SRR4302540.8191006/1‑94 (MQ=60)

                                                               GTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTT                             <  SRR4302540.6572171/94‑1 (MQ=60)

                                                               GTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTT                             >  SRR4302540.1867102/1‑94 (MQ=60)

                                                               GGTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTT                             <  SRR4302540.6572172/94‑1 (MQ=60)

                                                                TTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTG                            >  SRR4302540.2917476/1‑94 (MQ=60)

                                                                TTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTG                            <  SRR4302540.10133920/94‑1 (MQ=60)

                                                                 TCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCCCTTTTGA                           >  SRR4302540.2012821/1‑94 (MQ=60)

                                                                  CAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAG                          >  SRR4302540.7911984/1‑94 (MQ=60)

                                                                  CAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAG                          <  SRR4302540.1999055/94‑1 (MQ=60)

                                                                  CAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAG                          <  SRR4302540.5491425/94‑1 (MQ=60)

                                                                  CAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAG                          <  SRR4302540.5491427/94‑1 (MQ=60)

                                                                   AGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGT                         >  SRR4302540.3365938/1‑94 (MQ=60)

                                                                   AGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGT                         <  SRR4302540.6307207/94‑1 (MQ=60)

                                                                      CCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCA                      >  SRR4302540.6384281/1‑94 (MQ=60)

                                                                      CCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCA                      >  SRR4302540.4715223/1‑94 (MQ=60)

                                                                      CCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCA                      >  SRR4302540.6945012/1‑94 (MQ=60)

                                                                      CCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCA                      <  SRR4302540.5042088/94‑1 (MQ=60)

                                                                       CGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAC                     >  SRR4302540.6406736/1‑94 (MQ=60)

                                                                        GAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACC                    <  SRR4302540.3074750/94‑1 (MQ=60)

                                                                        GAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACC                    <  SRR4302540.532682/94‑1 (MQ=60)

                                                                        GAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACC                    <  SRR4302540.4740943/94‑1 (MQ=60)

                                                                        CAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACC                    <  SRR4302540.3221629/94‑1 (MQ=60)

                                                                           CATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTC                 >  SRR4302540.6114509/1‑94 (MQ=60)

                                                                            ATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCT                <  SRR4302540.6998161/94‑1 (MQ=60)

                                                                            ATCTCTTGGTCAGGCACATCGGTAATCAACTGGATGACGGAATGCCAGCCAATATCTTCACGCGCCAGATTCAGCACTTTTGAGTCCACCGTCT                >  SRR4302540.5316399/1‑94 (MQ=60)

                                                                              CTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCT              <  SRR4302540.703453/94‑1 (MQ=60)

                                                                               TCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTA             >  SRR4302540.7070290/1‑94 (MQ=60)

                                                                                 TTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACC           <  SRR4302540.4211330/94‑1 (MQ=60)

                                                                                  TGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCG          >  SRR4302540.7792273/1‑94 (MQ=60)

                                                                                   GGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGA         >  SRR4302540.6558919/1‑94 (MQ=60)

                                                                                      CAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAG      >  SRR4302540.4613478/1‑94 (MQ=60)

                                                                                       AGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGC     <  SRR4302540.9441268/94‑1 (MQ=60)

                                                                                       AGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGC     <  SRR4302540.5453603/94‑1 (MQ=60)

                                                                                        GGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCG    <  SRR4302540.9008493/94‑1 (MQ=60)

                                                                                         GCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGC   >  SRR4302540.4447406/1‑94 (MQ=60)

                                                                                         GCGCATCGGTAATCAACTCGCTAACGGAATGCCAGACAATATCTTCCCGAGCCAGATTCAGCACTTGTGCGTCCACCGTCTCTACCGACAGCGC   >  SRR4302540.1820682/1‑94 (MQ=60)

                                                                                          CGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCC  >  SRR4302540.6946514/1‑94 (MQ=60)

                                                                                          CGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCC  >  SRR4302540.7082383/1‑94 (MQ=60)

CGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCC  >  NC_000913/1765600‑1765783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`