Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,789,635 T→C Y137C (TAT→TGT)  b1707 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,789,6350TC99.1% 1108.6 / ‑2.0 344Y137C (TAT→TGT) b1707hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (2/1);  new base C (170/171);  total (172/172)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01

Only 100 of 363 total aligned reads displayed.

CTTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGATACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGA  >  NC_000913/1789545‑1789724
                                                                                          |                                                                                         
   ttATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACt                                                                                      <  1:2505963/93‑1 (MQ=255)
   ttATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACt                                                                                      <  1:5089885/93‑1 (MQ=255)
      tCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGc                                                                                   >  1:7042039/1‑93 (MQ=255)
      tCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGc                                                                                   >  2:6919351/1‑93 (MQ=255)
        cAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGa                                                                                 >  1:9171019/1‑93 (MQ=255)
          gCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATa                                                                               <  2:6149702/93‑1 (MQ=255)
           cATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATaa                                                                              <  2:5766588/93‑1 (MQ=255)
            aTGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAg                                                                             <  1:10036831/93‑1 (MQ=255)
            aTGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAg                                                                             >  1:6236861/1‑93 (MQ=255)
             tGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAgg                                                                            <  2:9732162/93‑1 (MQ=255)
             tGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAgg                                                                            >  2:4620655/1‑93 (MQ=255)
             tGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAgg                                                                            <  1:6193034/93‑1 (MQ=255)
             tGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTCCTCCCAATTTACCTAACACAAGGGGACAAATTTGCGATAAga                                                                            >  1:2824343/1‑92 (MQ=255)
              gACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGa                                                                           >  1:5735393/1‑93 (MQ=255)
               aCGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGAt                                                                          <  2:6043277/93‑1 (MQ=255)
                   ggggGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATaaaa                                                                      >  2:2366946/1‑93 (MQ=255)
                   gggTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATaaaa                                                                      >  1:9365639/1‑93 (MQ=255)
                    ggTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAg                                                                     >  2:2056236/1‑93 (MQ=255)
                     gTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACGTAACACAATGGGGCACACTTGCGATAAGGACAAAAGa                                                                    >  2:7557787/1‑93 (MQ=255)
                     gTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGa                                                                    <  1:7133089/93‑1 (MQ=255)
                      tGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAc                                                                   >  1:8018826/1‑93 (MQ=255)
                       gAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAcc                                                                  >  2:140362/1‑93 (MQ=255)
                       gAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAcc                                                                  <  2:7634060/93‑1 (MQ=255)
                         aaaGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACcgc                                                                >  2:876088/1‑93 (MQ=255)
                           aGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGATACACTTGCGATAAGGATAAAAGACCGCGa                                                              <  1:9972579/93‑1 (MQ=255)
                           aGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGa                                                              <  1:2665586/93‑1 (MQ=255)
                            gACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGAt                                                             <  1:6627158/93‑1 (MQ=255)
                               cATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTAt                                                          >  2:7526748/1‑93 (MQ=255)
                               cATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTAt                                                          >  1:4684848/1‑93 (MQ=255)
                                aTCAAAAACCTCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATc                                                         <  1:5869704/93‑1 (MQ=255)
                                aTCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTA‑CTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCt                                                        <  1:1889449/93‑1 (MQ=255)
                                 tCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACCCACTTGCGATAAGGCTAAAAGACCGCGATTATCt                                                        >  1:2187233/1‑93 (MQ=255)
                                 tCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCt                                                        >  2:6177267/1‑93 (MQ=255)
                                  cAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCtt                                                       <  1:1227889/93‑1 (MQ=255)
                                   aaaaaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCttt                                                      >  1:9593485/1‑93 (MQ=255)
                                    aaaaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCtttt                                                     <  1:2063381/93‑1 (MQ=255)
                                     aaaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTc                                                    <  2:3751443/93‑1 (MQ=255)
                                     aaaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTc                                                    <  2:3041179/93‑1 (MQ=255)
                                     aaaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTc                                                    <  2:7849203/93‑1 (MQ=255)
                                     aaaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTc                                                    >  2:8539497/1‑93 (MQ=255)
                                      aaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTcc                                                   <  1:8728310/93‑1 (MQ=255)
                                      aaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTcc                                                   >  1:3681918/1‑93 (MQ=255)
                                       aCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCt                                                  <  2:474791/93‑1 (MQ=255)
                                       aCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCt                                                  <  2:9603021/93‑1 (MQ=255)
                                        ccGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCtt                                                 >  1:3120005/1‑93 (MQ=255)
                                          gCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCa                                               <  1:6791761/93‑1 (MQ=255)
                                          gCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCa                                               >  2:3821572/1‑93 (MQ=255)
                                            tttCATTGTGCTATTGCCTGCTCTCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCAtt                                             <  2:5499034/93‑1 (MQ=255)
                                            tttCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCAtt                                             >  2:1506102/1‑93 (MQ=255)
                                             ttCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTg                                            <  1:7394820/93‑1 (MQ=255)
                                              tCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTga                                           >  1:641447/1‑93 (MQ=255)
                                               cATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTgag                                          <  2:532778/93‑1 (MQ=255)
                                               cATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTgag                                          <  1:3562189/93‑1 (MQ=255)
                                                aTTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTgaga                                         <  1:7549717/93‑1 (MQ=255)
                                                  tgtgCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATg                                       <  2:8074982/93‑1 (MQ=255)
                                                    tgCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCg                                     <  2:3587313/93‑1 (MQ=255)
                                                     gCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCgg                                    >  2:1717563/1‑93 (MQ=255)
                                                      cTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCggg                                   <  2:9158085/93‑1 (MQ=255)
                                                       tATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGt                                  >  2:1131068/1‑93 (MQ=255)
                                                       tATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGt                                  <  2:6479497/93‑1 (MQ=255)
                                                       tATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGt                                  >  2:4287126/1‑93 (MQ=255)
                                                        aTTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTa                                 >  1:8111094/1‑93 (MQ=255)
                                                        aTTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTa                                 >  2:5035493/1‑93 (MQ=255)
                                                         ttGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTaa                                >  2:3909685/1‑93 (MQ=255)
                                                          tGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAAt                               >  1:1392596/1‑93 (MQ=255)
                                                          tGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGATAAt                               >  1:4926573/1‑93 (MQ=255)
                                                           gCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAAtt                              >  2:8322301/1‑93 (MQ=255)
                                                              tGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATtctc                           >  1:5300977/1‑93 (MQ=255)
                                                              tGCTCCCAAATTACCTAAAACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATtctc                           >  2:4092430/1‑93 (MQ=255)
                                                               gCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCa                          <  2:9508083/93‑1 (MQ=255)
                                                               gCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCa                          <  2:2645406/93‑1 (MQ=255)
                                                               gCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCa                          <  2:2547802/93‑1 (MQ=255)
                                                                cTCCCAAATTACCTAACACAAGGTGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCAt                         <  2:7236281/93‑1 (MQ=255)
                                                                cTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCAt                         <  1:6345227/93‑1 (MQ=255)
                                                                cTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCAt                         >  2:6322180/1‑93 (MQ=255)
                                                                 tCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCAtt                        <  2:8848140/93‑1 (MQ=255)
                                                                 tCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCAtt                        >  1:5452907/1‑93 (MQ=255)
                                                                  cccAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTa                       <  2:6767355/93‑1 (MQ=255)
                                                                    cAAATTACCTAACACAAGGGGATACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAGTTCTCATTAAt                     >  1:9103917/1‑93 (MQ=255)
                                                                    cAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAAt                     >  1:4264143/1‑93 (MQ=255)
                                                                     aaaTTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAAta                    >  2:7198866/1‑92 (MQ=255)
                                                                     aaaTTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATc                    <  1:8311078/93‑1 (MQ=255)
                                                                     aaaTTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATc                    >  2:4482951/1‑93 (MQ=255)
                                                                        ttACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAAc                 <  1:669612/93‑1 (MQ=255)
                                                                         tACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACa                >  1:3826731/1‑93 (MQ=255)
                                                                         tACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACa                >  2:3337723/1‑93 (MQ=255)
                                                                         tACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGAGTATCTTTTCCTTCATTGAGATGCGGGTAAATCTCATTAATCAACa                >  1:8932638/1‑93 (MQ=255)
                                                                          aCCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAg               <  1:4860742/93‑1 (MQ=255)
                                                                            cTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGtt             >  2:6341868/1‑93 (MQ=255)
                                                                            cTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGtt             >  1:1063695/1‑93 (MQ=255)
                                                                              aaCACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCa           <  2:8303010/93‑1 (MQ=255)
                                                                               acacAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCaa          >  1:4161616/1‑93 (MQ=255)
                                                                                cacaAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAAt         >  1:5178242/1‑93 (MQ=255)
                                                                                cacaAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAAt         <  1:1585985/93‑1 (MQ=255)
                                                                                    aGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAAc     <  1:689807/93‑1 (MQ=255)
                                                                                     ggggACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACg    >  2:8676966/1‑93 (MQ=255)
                                                                                       ggACACACTTGCGGTCAGGATACGAGACCGCGATTATCTTTTCCTACATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAGACGGa  <  1:8976785/93‑1 (MQ=255)
                                                                                       ggACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGTTAATTCTCATTAATCAACAGTTCAATAAACGGa  <  2:4938693/93‑1 (MQ=255)
                                                                                       ggACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGa  <  1:2757697/93‑1 (MQ=255)
                                                                                       ggACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGa  <  2:3387106/93‑1 (MQ=255)
                                                                                          |                                                                                         
CTTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGATACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGA  >  NC_000913/1789545‑1789724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAACTTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGATACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGATATT  >  NC_000913/1789542‑1789728
                                                                                             |                                                                                             
AAACTTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGAC                                                                                               >  SRR4302540.1161372/1‑94 (MQ=60)
 AACTTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACA                                                                                              <  SRR4302540.385835/94‑1 (MQ=60)
   CTTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACA                                                                                            <  SRR4302540.5909497/94‑1 (MQ=60)
   CTTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACA                                                                                            >  SRR4302540.5038566/1‑94 (MQ=60)
   CTTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACA                                                                                            >  SRR4302540.220741/1‑94 (MQ=60)
    TTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACAC                                                                                           <  SRR4302540.6761556/94‑1 (MQ=60)
    TTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACAC                                                                                           <  SRR4302540.7059916/94‑1 (MQ=60)
    TTTTAGCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTGTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACAC                                                                                           <  SRR4302540.2844564/94‑1 (MQ=60)
     TTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACT                                                                                          >  SRR4302540.1798165/1‑94 (MQ=60)
      TTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTT                                                                                         <  SRR4302540.5144921/94‑1 (MQ=60)
      TTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTT                                                                                         <  SRR4302540.2533018/94‑1 (MQ=60)
        ATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGC                                                                                       >  SRR4302540.3525439/1‑94 (MQ=60)
        ATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGC                                                                                       >  SRR4302540.9108953/1‑94 (MQ=60)
        ATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGC                                                                                       >  SRR4302540.7120334/1‑94 (MQ=60)
         TCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCG                                                                                      >  SRR4302540.9044611/1‑94 (MQ=60)
          TCAGCATGACGGGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTCCCTAGCACAAGGGGACACGCTTGCGA                                                                                     <  SRR4302540.5476469/94‑1 (MQ=60)
          CCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTCCCTAACACAAGGGGACACACTTGCGA                                                                                     <  SRR4302540.1714167/94‑1 (MQ=60)
          CCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGA                                                                                     >  SRR4302540.9281034/1‑94 (MQ=60)
           CAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGCGACACACTTGCGAT                                                                                    >  SRR4302540.1462660/1‑94 (MQ=60)
            AGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATA                                                                                   <  SRR4302540.4864552/94‑1 (MQ=60)
              CATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAG                                                                                 <  SRR4302540.2693612/94‑1 (MQ=60)
              CATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAG                                                                                 >  SRR4302540.6306247/1‑94 (MQ=60)
              CATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAG                                                                                 >  SRR4302540.2173889/1‑94 (MQ=60)
               ATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGG                                                                                <  SRR4302540.10153553/94‑1 (MQ=60)
               ATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGG                                                                                >  SRR4302540.7186233/1‑94 (MQ=60)
               ATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTCCTCCCAATTTACCTAACACAAGGGGACAAATTTGCGATAAGA                                                                                >  SRR4302540.2854861/1‑94 (MQ=60)
                TGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGA                                                                               <  SRR4302540.6261993/94‑1 (MQ=60)
                TGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGA                                                                               >  SRR4302540.5798576/1‑94 (MQ=60)
                TGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGA                                                                               <  SRR4302540.6261992/94‑1 (MQ=60)
                TGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGA                                                                               >  SRR4302540.3851620/1‑94 (MQ=60)
                 GACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGga                                                                              >  SRR4302540.6454497/1‑92 (MQ=60)
                 GACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGAT                                                                              >  SRR4302540.3019215/1‑94 (MQ=60)
                 GACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGAT                                                                              >  SRR4302540.8330422/1‑94 (MQ=60)
                  ACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATA                                                                             <  SRR4302540.8657080/94‑1 (MQ=60)
                  ACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATA                                                                             <  SRR4302540.1340465/94‑1 (MQ=60)
                  ACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATA                                                                             <  SRR4302540.1240055/94‑1 (MQ=60)
                  ACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATA                                                                             <  SRR4302540.2448399/94‑1 (MQ=60)
                   CGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAA                                                                            <  SRR4302540.8113721/94‑1 (MQ=60)
                   CGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAA                                                                            <  SRR4302540.9516467/94‑1 (MQ=60)
                   CGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAA                                                                            >  SRR4302540.5577398/1‑94 (MQ=60)
                     CGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAA                                                                          >  SRR4302540.9477156/1‑94 (MQ=60)
                     CGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAA                                                                          >  SRR4302540.9477157/1‑94 (MQ=60)
                     CGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAA                                                                          <  SRR4302540.994622/94‑1 (MQ=60)
                     CGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAA                                                                          >  SRR4302540.548137/1‑94 (MQ=60)
                      GGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGCCACACTTGCGATAAGGATAAAAG                                                                         >  SRR4302540.6268224/1‑94 (MQ=60)
                      GGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAG                                                                         <  SRR4302540.9264414/94‑1 (MQ=60)
                      GGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAG                                                                         >  SRR4302540.3662732/1‑94 (MQ=60)
                       GGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGA                                                                        >  SRR4302540.8192549/1‑94 (MQ=60)
                        GTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAC                                                                       <  SRR4302540.631815/94‑1 (MQ=60)
                        GTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAC                                                                       <  SRR4302540.1973192/94‑1 (MQ=60)
                        GTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAC                                                                       >  SRR4302540.5848372/1‑94 (MQ=60)
                        GTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAC                                                                       <  SRR4302540.7212549/94‑1 (MQ=60)
                        GTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAC                                                                       >  SRR4302540.8112093/1‑94 (MQ=60)
                         TGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACC                                                                      >  SRR4302540.2768014/1‑94 (MQ=60)
                          GAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCG                                                                     <  SRR4302540.4388570/94‑1 (MQ=60)
                          GAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCG                                                                     >  SRR4302540.7654466/1‑94 (MQ=60)
                          GAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCG                                                                     <  SRR4302540.5141767/94‑1 (MQ=60)
                          GAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCG                                                                     >  SRR4302540.63902/1‑94 (MQ=60)
                           AAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGATACACTTGCGATAAGGATAAAAGACCGC                                                                    >  SRR4302540.6889466/1‑94 (MQ=60)
                           AAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGC                                                                    >  SRR4302540.374017/1‑94 (MQ=60)
                            AAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCG                                                                   <  SRR4302540.1201117/94‑1 (MQ=60)
                             AAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGA                                                                  >  SRR4302540.2799671/1‑94 (MQ=60)
                              AGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGATACACTTGCGATAAGGATAAAAGACCGCGAT                                                                 <  SRR4302540.10088896/94‑1 (MQ=60)
                              AGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGAT                                                                 <  SRR4302540.2694484/94‑1 (MQ=60)
                              AGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGAT                                                                 >  SRR4302540.1070232/1‑94 (MQ=60)
                               GACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATT                                                                <  SRR4302540.6700524/94‑1 (MQ=60)
                                ACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTA                                                               <  SRR4302540.8247656/94‑1 (MQ=60)
                                 CCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTAT                                                              <  SRR4302540.8439102/94‑1 (MQ=60)
                                 CCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTAT                                                              >  SRR4302540.4734958/1‑94 (MQ=60)
                                  CATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATC                                                             >  SRR4302540.3607896/1‑94 (MQ=60)
                                   ATCAAAAACCTCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCT                                                            <  SRR4302540.5934586/94‑1 (MQ=60)
                                   ATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACCCACTTGCGATAAGGCTAAAAGACCGCGATTATCT                                                            >  SRR4302540.2210844/1‑94 (MQ=60)
                                   ATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCT                                                            <  SRR4302540.194254/94‑1 (MQ=60)
                                   ATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCT                                                            >  SRR4302540.2210845/1‑94 (MQ=60)
                                   ATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCT                                                            >  SRR4302540.9452464/1‑94 (MQ=60)
                                   ATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTA‑CTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTT                                                           <  SRR4302540.1910130/94‑1 (MQ=60)
                                    tccacAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACCCTTGCGATAAGGATAAAAGACCGCGATTATCTT                                                           <  SRR4302540.7768903/89‑1 (MQ=60)
                                     CAAAAACCGCTTTCATTGTGCTATTGCCTGGTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTT                                                          <  SRR4302540.6320703/94‑1 (MQ=60)
                                     CAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTT                                                          >  SRR4302540.9706697/1‑94 (MQ=60)
                                     CAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTT                                                          >  SRR4302540.5640030/1‑94 (MQ=60)
                                     CAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTT                                                          <  SRR4302540.1240436/94‑1 (MQ=60)
                                      AAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTT                                                         <  SRR4302540.4962659/94‑1 (MQ=60)
                                       AAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTC                                                        <  SRR4302540.2085582/94‑1 (MQ=60)
                                       AAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTC                                                        >  SRR4302540.5413585/1‑94 (MQ=60)
                                       AAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTC                                                        >  SRR4302540.1538292/1‑94 (MQ=60)
                                        AAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCC                                                       <  SRR4302540.7432368/94‑1 (MQ=60)
                                        AAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCC                                                       <  SRR4302540.3224152/94‑1 (MQ=60)
                                        AAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCC                                                       >  SRR4302540.3722159/1‑94 (MQ=60)
                                        AAACCGCTTTCATTGTGATATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCC                                                       <  SRR4302540.8758690/94‑1 (MQ=60)
                                         AACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCT                                                      <  SRR4302540.8829667/94‑1 (MQ=60)
                                         AACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCT                                                      <  SRR4302540.6764746/94‑1 (MQ=60)
                                          ACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTT                                                     >  SRR4302540.3154104/1‑94 (MQ=60)
                                            CGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCA                                                   <  SRR4302540.7367585/94‑1 (MQ=60)
                                             GCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCAT                                                  >  SRR4302540.8156409/1‑94 (MQ=60)
                                             GCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCAT                                                  <  SRR4302540.6866876/94‑1 (MQ=60)
                                              CTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATT                                                 <  SRR4302540.9586565/94‑1 (MQ=60)
                                              CTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATT                                                 >  SRR4302540.1071398/1‑94 (MQ=60)
                                                TTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGA                                               <  SRR4302540.7477214/94‑1 (MQ=60)
                                                TTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGA                                               >  SRR4302540.648280/1‑94 (MQ=60)
                                                TTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGA                                               <  SRR4302540.5982239/94‑1 (MQ=60)
                                                 TCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAG                                              >  SRR4302540.6776021/1‑94 (MQ=60)
                                                 TCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAG                                              >  SRR4302540.6776020/1‑94 (MQ=60)
                                                  CATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGA                                             <  SRR4302540.3601103/94‑1 (MQ=60)
                                                  CATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGA                                             <  SRR4302540.4955098/94‑1 (MQ=60)
                                                   ATTGTGCTATTGCCTTCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGAT                                            <  SRR4302540.2728767/94‑1 (MQ=60)
                                                   ATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGAT                                            >  SRR4302540.6130725/1‑94 (MQ=60)
                                                   ATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGAT                                            <  SRR4302540.7634343/94‑1 (MQ=60)
                                                   ATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGAT                                            <  SRR4302540.7634342/94‑1 (MQ=60)
                                                   ATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGAT                                            <  SRR4302540.6980746/94‑1 (MQ=60)
                                                   ATTGTGCTATTGCCTGCTCCCAAATTACATAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGAT                                            <  SRR4302540.7193017/94‑1 (MQ=60)
                                                    TTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGTGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATG                                           <  SRR4302540.8906261/94‑1 (MQ=60)
                                                    TTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATG                                           <  SRR4302540.5987048/94‑1 (MQ=60)
                                                    TTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATG                                           <  SRR4302540.9007011/94‑1 (MQ=60)
                                                     TGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGC                                          >  SRR4302540.2566831/1‑94 (MQ=60)
                                                     TGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGC                                          <  SRR4302540.5908945/94‑1 (MQ=60)
                                                      GTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCG                                         >  SRR4302540.6557571/1‑94 (MQ=60)
                                                      GTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCG                                         >  SRR4302540.6557578/1‑94 (MQ=60)
                                                        GCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGG                                       >  SRR4302540.7301302/1‑94 (MQ=60)
                                                        GCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGG                                       >  SRR4302540.2268162/1‑94 (MQ=60)
                                                         CTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGT                                      >  SRR4302540.970556/1‑94 (MQ=60)
                                                         CTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGT                                      >  SRR4302540.9516808/1‑94 (MQ=60)
                                                          TATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTA                                     >  SRR4302540.8205232/1‑94 (MQ=60)
                                                          TATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTA                                     <  SRR4302540.4196938/94‑1 (MQ=60)
                                                            TTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAAT                                   >  SRR4302540.1407513/1‑94 (MQ=60)
                                                            TTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAAT                                   <  SRR4302540.1768896/94‑1 (MQ=60)
                                                            TTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGATAAT                                   >  SRR4302540.4979671/1‑94 (MQ=60)
                                                              GCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTC                                 >  SRR4302540.4435919/1‑94 (MQ=60)
                                                                CTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTC                               >  SRR4302540.5358976/1‑94 (MQ=60)
                                                                CTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTC                               >  SRR4302540.8856934/1‑94 (MQ=60)
                                                                 TGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCA                              <  SRR4302540.9118045/94‑1 (MQ=60)
                                                                  GCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCAT                             <  SRR4302540.3737159/94‑1 (MQ=60)
                                                                   CTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATT                            >  SRR4302540.6566552/1‑94 (MQ=60)
                                                                   CTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATT                            >  SRR4302540.5512921/1‑94 (MQ=60)
                                                                   CTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATT                            <  SRR4302540.2136140/94‑1 (MQ=60)
                                                                   CTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATT                            <  SRR4302540.6415882/94‑1 (MQ=60)
                                                                    TCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTA                           <  SRR4302540.6980878/94‑1 (MQ=60)
                                                                    TCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTA                           <  SRR4302540.5203225/94‑1 (MQ=60)
                                                                    TCCCAAAATACCTAACACAAGGAGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTA                           <  SRR4302540.5242784/94‑1 (MQ=60)
                                                                     CCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAA                          >  SRR4302540.1113557/1‑94 (MQ=60)
                                                                     CCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAA                          >  SRR4302540.4800443/1‑94 (MQ=60)
                                                                      CCAAATTACCTAACACAAGGGGATACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAGTTCTCATTAAT                         >  SRR4302540.9213313/1‑94 (MQ=60)
                                                                      CCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAAT                         >  SRR4302540.4310517/1‑94 (MQ=60)
                                                                      CCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAAT                         >  SRR4302540.4310516/1‑94 (MQ=60)
                                                                      CCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAAT                         >  SRR4302540.4310519/1‑94 (MQ=60)
                                                                       CAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTActa                        >  SRR4302540.3066229/1‑91 (MQ=60)
                                                                       CAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATC                        <  SRR4302540.6959859/94‑1 (MQ=60)
                                                                        AAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGTTAATTATCATTAATAA                       >  SRR4302540.7634186/1‑94 (MQ=60)
                                                                        AAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCA                       >  SRR4302540.7634185/1‑94 (MQ=60)
                                                                        AAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCA                       <  SRR4302540.8407558/94‑1 (MQ=60)
                                                                         AATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAA                      <  SRR4302540.5078206/94‑1 (MQ=60)
                                                                          ATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAAC                     >  SRR4302540.1438856/1‑94 (MQ=60)
                                                                          ATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAAC                     <  SRR4302540.4230101/94‑1 (MQ=60)
                                                                           TTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACA                    <  SRR4302540.676791/94‑1 (MQ=60)
                                                                           TTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACA                    >  SRR4302540.3868374/1‑94 (MQ=60)
                                                                           TTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACA                    >  SRR4302540.6464297/1‑94 (MQ=60)
                                                                           TTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACA                    >  SRR4302540.9036978/1‑94 (MQ=60)
                                                                           TTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGAGTATCTTTTCCTTCATTGAGATGCGGGTAAATCTCATTAATCAACA                    >  SRR4302540.9036977/1‑94 (MQ=60)
                                                                            TACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAG                   >  SRR4302540.2769012/1‑94 (MQ=60)
                                                                            TACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAG                   >  SRR4302540.3357636/1‑94 (MQ=60)
                                                                             ACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGT                  <  SRR4302540.4912864/94‑1 (MQ=60)
                                                                             ACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGT                  <  SRR4302540.4078018/94‑1 (MQ=60)
                                                                             ACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGT                  <  SRR4302540.4912863/94‑1 (MQ=60)
                                                                              CCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTT                 >  SRR4302540.1074530/1‑94 (MQ=60)
                                                                               CTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTC                >  SRR4302540.5324200/1‑94 (MQ=60)
                                                                               CTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTC                >  SRR4302540.2970793/1‑94 (MQ=60)
                                                                               CTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTC                <  SRR4302540.1396849/94‑1 (MQ=60)
                                                                                 AACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAA              >  SRR4302540.4206723/1‑94 (MQ=60)
                                                                                  ACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAAT             >  SRR4302540.5234601/1‑94 (MQ=60)
                                                                                  ACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAAT             <  SRR4302540.6769021/94‑1 (MQ=60)
                                                                                   CACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATA            <  SRR4302540.1603311/94‑1 (MQ=60)
                                                                                   CACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATA            <  SRR4302540.9216698/94‑1 (MQ=60)
                                                                                     CAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAA          <  SRR4302540.6973792/94‑1 (MQ=60)
                                                                                      AAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAAC         <  SRR4302540.7565810/94‑1 (MQ=60)
                                                                                      AAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAAC         <  SRR4302540.5301217/94‑1 (MQ=60)
                                                                                       AGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACG        <  SRR4302540.697209/94‑1 (MQ=60)
                                                                                       AGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACG        <  SRR4302540.7966025/94‑1 (MQ=60)
                                                                                       AGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACG        <  SRR4302540.4041252/94‑1 (MQ=60)
                                                                                        GGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGG       >  SRR4302540.5198887/1‑94 (MQ=60)
                                                                                          GGACACACTTGCGGTCAGGATACGAGACCGCGATTATCTTTTCCTACATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAGACGGAT     <  SRR4302540.9083635/94‑1 (MQ=60)
                                                                                          GGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGAT     <  SRR4302540.9363891/94‑1 (MQ=60)
                                                                                          GGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGAT     <  SRR4302540.2787495/94‑1 (MQ=60)
                                                                                          GGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGAT     >  SRR4302540.658861/1‑94 (MQ=60)
                                                                                          GGACACACTTGCGATAAAGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGAT     <  SRR4302540.9083636/94‑1 (MQ=60)
                                                                                           GACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGATA    <  SRR4302540.6418477/94‑1 (MQ=60)
                                                                                            ACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGATAT   >  SRR4302540.2199816/1‑94 (MQ=60)
                                                                                            ACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGATAT   <  SRR4302540.583883/94‑1 (MQ=60)
                                                                                             CACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGATATT  >  SRR4302540.3385678/1‑94 (MQ=60)
                                                                                             CACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGATATT  <  SRR4302540.7943716/94‑1 (MQ=60)
                                                                                             |                                                                                             
AAACTTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGATACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGATATT  >  NC_000913/1789542‑1789728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑