Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,839,782 A→G H90R (CAC→CGC)  b1759 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,839,7820AG100.0% 685.8 / NA 213H90R (CAC→CGC) b1759hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (102/111);  total (102/111)

Only 100 of 226 total aligned reads displayed.

AAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATT  >  NC_000913/1839692‑1839870
                                                                                          |                                                                                        
aaGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCcgcg                                                                                        >  2:4040398/1‑93 (MQ=255)
  gCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCggg                                                                                      >  1:2780951/1‑93 (MQ=255)
   cAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGa                                                                                     <  1:8761952/93‑1 (MQ=255)
   cAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGa                                                                                     >  2:3797168/1‑93 (MQ=255)
    aaCTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGAc                                                                                    >  2:7331074/1‑93 (MQ=255)
     aCTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTTCCCGACTTCCGCGGGACg                                                                                   <  2:7789215/93‑1 (MQ=255)
     aCTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACg                                                                                   >  1:4467116/1‑93 (MQ=255)
     aCTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGAATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACg                                                                                   >  1:1773541/1‑93 (MQ=255)
      cTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGt                                                                                  >  2:2902563/1‑93 (MQ=255)
       tgtgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGCTTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGtt                                                                                 <  2:6000534/93‑1 (MQ=255)
        gtgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTa                                                                                >  1:3161526/1‑93 (MQ=255)
         tgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTAc                                                                               <  2:9231302/93‑1 (MQ=255)
          gggTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACa                                                                              >  2:2208464/1‑93 (MQ=255)
           ggTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAg                                                                             <  1:8152319/93‑1 (MQ=255)
              gAATATGTTGGCAGCTATCAGAGAGAAGGTTCGGGGCGGATTAACCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGca                                                                          <  2:7480925/93‑1 (MQ=255)
              gAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGca                                                                          >  2:326468/1‑93 (MQ=255)
               aaTATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGcac                                                                         >  2:6996312/1‑93 (MQ=255)
                 tatGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACAt                                                                       <  2:6509367/93‑1 (MQ=255)
                 tatGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACAt                                                                       >  1:3937487/1‑93 (MQ=255)
                  atGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATg                                                                      >  2:6887033/1‑93 (MQ=255)
                   tGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGa                                                                     >  2:9886187/1‑93 (MQ=255)
                    gTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGaa                                                                    <  1:4199153/93‑1 (MQ=255)
                     ttGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAAc                                                                   <  1:3750998/93‑1 (MQ=255)
                         cagccaTCAGCGAGGAGTTTTGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGGTACAGGCACATGAACATCa                                                               >  2:1624106/1‑93 (MQ=255)
                         cagccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCa                                                               <  1:4904427/93‑1 (MQ=255)
                          agccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAg                                                              <  2:4664253/93‑1 (MQ=255)
                          agccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAg                                                              >  1:6792441/1‑93 (MQ=255)
                           gccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAgg                                                             >  1:4716989/1‑93 (MQ=255)
                            ccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGgc                                                            >  2:6748661/1‑93 (MQ=255)
                            ccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGgc                                                            >  1:2292733/1‑93 (MQ=255)
                            ccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGgc                                                            <  1:932271/93‑1 (MQ=255)
                             caTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGgcg                                                           >  2:8634894/1‑93 (MQ=255)
                              aTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGgcgc                                                          <  2:564788/93‑1 (MQ=255)
                               tCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGct                                                         >  1:9520285/1‑93 (MQ=255)
                               tCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGct                                                         >  2:5930143/1‑93 (MQ=255)
                               tCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGct                                                         >  2:5723955/1‑93 (MQ=255)
                               tCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTAATGACTGGCACGCACCCGACTTCCGCGGGGCGTTACAGCCACATGAAAATCAGgcctt                                                         >  2:8733118/1‑90 (MQ=255)
                                cAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTCCCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctg                                                        <  1:3735019/93‑1 (MQ=255)
                                 aGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACGTCAGGCGctgg                                                       >  2:5124245/1‑93 (MQ=255)
                                 aGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctgg                                                       <  2:455273/93‑1 (MQ=255)
                                  gCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggt                                                      >  1:3327074/1‑93 (MQ=255)
                                   cGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtc                                                     <  2:2846220/93‑1 (MQ=255)
                                    gagaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtct                                                    <  1:3378010/93‑1 (MQ=255)
                                      gaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctgg                                                  >  1:4296348/1‑93 (MQ=255)
                                       aaGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctggt                                                 <  2:6090897/93‑1 (MQ=255)
                                       aaGTTTCGGGGCGGATTACGCATCTGCATGCGTTGCATGTCCCCATCTTGCGCGGGACGTTACAGGCACATGAACATAAGGCGctggtctggg                                                 <  2:9707536/93‑2 (MQ=255)
                                        aGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTg                                                <  2:5045297/93‑1 (MQ=255)
                                        aGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTg                                                >  2:3302998/1‑93 (MQ=255)
                                          tttCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCt                                              >  2:7354212/1‑93 (MQ=255)
                                           ttCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTc                                             <  1:2651973/93‑1 (MQ=255)
                                            tCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCa                                            >  2:5041637/1‑93 (MQ=255)
                                              ggggCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCAcc                                          <  2:6212976/93‑1 (MQ=255)
                                              ggggCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCAcc                                          >  2:423758/1‑93 (MQ=255)
                                              ggggCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCAcc                                          <  2:3100573/93‑1 (MQ=255)
                                                   ggATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAag                                     <  1:3453929/93‑1 (MQ=255)
                                                   ggATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAag                                     <  2:8069984/93‑1 (MQ=255)
                                                    gATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAaga                                    <  2:1170553/93‑1 (MQ=255)
                                                    gATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAaga                                    >  1:7602271/1‑93 (MQ=255)
                                                     aTTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAagag                                   <  1:1350596/93‑1 (MQ=255)
                                                      ttATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAgg                                  >  1:9612814/1‑93 (MQ=255)
                                                       tATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGgc                                 <  1:848758/93‑1 (MQ=255)
                                                       tATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGgc                                 <  2:9490714/93‑1 (MQ=255)
                                                         tCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGgcgc                               <  1:921769/93‑1 (MQ=255)
                                                          ccATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCt                              <  2:4738349/93‑1 (MQ=255)
                                                          ccATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCt                              <  1:5872551/93‑1 (MQ=255)
                                                           cATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTg                             >  2:7649778/1‑93 (MQ=255)
                                                            aTCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGc                            >  1:2475407/1‑93 (MQ=255)
                                                             tCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCa                           >  1:9099448/1‑93 (MQ=255)
                                                             tCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCa                           >  2:5352706/1‑93 (MQ=255)
                                                             tCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGAACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGCAGAGGCGCTGCa                           >  1:916064/1‑93 (MQ=255)
                                                              cctCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCaa                          <  2:4623134/91‑1 (MQ=255)
                                                              cTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTTGTGCTCACCTGAAGAGGCGCTGCaa                          <  2:7411434/93‑1 (MQ=255)
                                                               ttCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAat                         >  1:7833859/1‑93 (MQ=255)
                                                                tCATTCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAata                        <  1:7321156/93‑1 (MQ=255)
                                                                tCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAata                        <  1:4158314/93‑1 (MQ=255)
                                                                tCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAata                        <  1:6158987/93‑1 (MQ=255)
                                                                  aTGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATc                      <  1:7181158/93‑1 (MQ=255)
                                                                     ccTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGc                   <  2:1991759/93‑1 (MQ=255)
                                                                      cTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCt                  <  1:7882112/93‑1 (MQ=255)
                                                                      cTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCt                  <  1:9013793/93‑1 (MQ=255)
                                                                       tGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTg                 <  1:5301561/93‑1 (MQ=255)
                                                                       tGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTg                 >  2:7963522/1‑93 (MQ=255)
                                                                            cGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGcccc            >  1:6029749/1‑93 (MQ=255)
                                                                            cGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGcccc            <  1:1886416/93‑1 (MQ=255)
                                                                             gTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCct           >  1:8418514/1‑93 (MQ=255)
                                                                             gTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCct           >  1:1388842/1‑93 (MQ=255)
                                                                              tACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctg          >  1:4058150/1‑93 (MQ=255)
                                                                              tACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctg          >  1:3823301/1‑93 (MQ=255)
                                                                               aCCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctgc         <  1:7111642/93‑1 (MQ=255)
                                                                               aCCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctgc         <  2:1294485/93‑1 (MQ=255)
                                                                               aCCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctgc         >  1:3502656/1‑93 (MQ=255)
                                                                                cccGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctgct        <  2:3066239/93‑1 (MQ=255)
                                                                                  cGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGa      >  2:4169440/1‑93 (MQ=255)
                                                                                  cGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGa      >  1:1802453/1‑93 (MQ=255)
                                                                                    ccTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACa    <  1:1099430/92‑1 (MQ=255)
                                                                                    aCTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACa    <  2:5236904/93‑1 (MQ=255)
                                                                                    aCTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACa    <  2:8851879/93‑1 (MQ=255)
                                                                                    aCTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACa    <  1:9929080/93‑1 (MQ=255)
                                                                                    aCTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACa    >  1:1178634/1‑93 (MQ=255)
                                                                                     cTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACAt   >  2:1476635/1‑93 (MQ=255)
                                                                                          |                                                                                        
AAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATT  >  NC_000913/1839692‑1839870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCA  >  NC_000913/1839689‑1839873
                                                                                             |                                                                                           
TCGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCG                                                                                             >  SRR4302540.6753498/1‑94 (MQ=60)
 CGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGC                                                                                            <  SRR4302540.881026/94‑1 (MQ=60)
 CGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGC                                                                                            <  SRR4302540.881025/94‑1 (MQ=60)
  GAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCG                                                                                           >  SRR4302540.1580013/1‑94 (MQ=60)
    AGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGG                                                                                         >  SRR4302540.2810993/1‑94 (MQ=60)
    AGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGG                                                                                         >  SRR4302540.3370655/1‑94 (MQ=60)
     GCAACTGTGGGTGAATCTGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGA                                                                                        <  SRR4302540.9083655/94‑1 (MQ=60)
      CAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGAC                                                                                       <  SRR4302540.8863543/94‑1 (MQ=60)
       AACTGTGGGTGAATATGTTGCCATCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACG                                                                                      >  SRR4302540.1853894/1‑94 (MQ=60)
       AACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACG                                                                                      >  SRR4302540.4515548/1‑94 (MQ=60)
       AACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACG                                                                                      >  SRR4302540.1793106/1‑94 (MQ=60)
       AACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGAATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACG                                                                                      >  SRR4302540.1792793/1‑94 (MQ=60)
          TGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTA                                                                                   >  SRR4302540.4449641/1‑94 (MQ=60)
          TGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTA                                                                                   >  SRR4302540.3195918/1‑94 (MQ=60)
           GTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTAC                                                                                  <  SRR4302540.4832369/94‑1 (MQ=60)
           GTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTAC                                                                                  >  SRR4302540.9561438/1‑94 (MQ=60)
             GGGTGAATATGTTGCCAGCCATCAGCGAGAAGTGTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAG                                                                                <  SRR4302540.9788914/94‑1 (MQ=60)
              GGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGG                                                                               <  SRR4302540.8246965/94‑1 (MQ=60)
                TGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCA                                                                             >  SRR4302540.7226054/1‑94 (MQ=60)
                TGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCA                                                                             <  SRR4302540.2362042/94‑1 (MQ=60)
                 GAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCAC                                                                            >  SRR4302540.9416331/1‑94 (MQ=60)
                   ATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACAT                                                                          >  SRR4302540.3980033/1‑94 (MQ=60)
                     ATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGA                                                                        >  SRR4302540.5276660/1‑94 (MQ=60)
                       GTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAAC                                                                      <  SRR4302540.4244840/94‑1 (MQ=60)
                        TTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACA                                                                     <  SRR4302540.3791921/94‑1 (MQ=60)
                        TTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACA                                                                     <  SRR4302540.3791919/94‑1 (MQ=60)
                           ccnannnannacgagaanttnnnatnctGATTACCCATCTTCATGCCTTGCACGCACCNGACTTCCGCGGGACGTTACAGGCACATGAACATCA                                                                  <  SRR4302540.857587/66‑1 (MQ=59)
                           CCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCA                                                                  >  SRR4302540.9285156/1‑94 (MQ=60)
                            CAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAG                                                                 >  SRR4302540.6867568/1‑94 (MQ=60)
                            CAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAG                                                                 >  SRR4302540.9720698/1‑94 (MQ=60)
                            CAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAG                                                                 <  SRR4302540.4957201/94‑1 (MQ=60)
                             AGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGG                                                                >  SRR4302540.4767385/1‑94 (MQ=60)
                              GCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGC                                                               <  SRR4302540.6730952/94‑1 (MQ=60)
                              GCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGC                                                               >  SRR4302540.2317406/1‑94 (MQ=60)
                              GCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGC                                                               <  SRR4302540.3347250/94‑1 (MQ=60)
                              GCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGC                                                               <  SRR4302540.3347249/94‑1 (MQ=60)
                               CCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCG                                                              <  SRR4302540.942064/94‑1 (MQ=60)
                               CCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCG                                                              >  SRR4302540.3695701/1‑94 (MQ=60)
                               CCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCG                                                              <  SRR4302540.3763214/94‑1 (MQ=60)
                               CCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCG                                                              >  SRR4302540.7539620/1‑94 (MQ=60)
                                CATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGC                                                             >  SRR4302540.9251663/1‑94 (MQ=60)
                                 ATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCT                                                            >  SRR4302540.9633028/1‑94 (MQ=60)
                                   CAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTCCCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGG                                                          <  SRR4302540.3775772/94‑1 (MQ=60)
                                    AGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGT                                                         >  SRR4302540.3363585/1‑94 (MQ=60)
                                      CGAGAAGTTTCGGGGCGGCTTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCT                                                       >  SRR4302540.1311884/1‑94 (MQ=60)
                                       GAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTG                                                      >  SRR4302540.710623/1‑94 (MQ=60)
                                       GAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTG                                                      >  SRR4302540.2832825/1‑94 (MQ=60)
                                       GAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTG                                                      <  SRR4302540.3414904/94‑1 (MQ=60)
                                        AGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGG                                                     >  SRR4302540.3425923/1‑94 (MQ=60)
                                        AGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGG                                                     >  SRR4302540.4343099/1‑94 (MQ=60)
                                        AGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGG                                                     >  SRR4302540.4343100/1‑94 (MQ=60)
                                          AAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTG                                                   <  SRR4302540.8587556/94‑1 (MQ=60)
                                              TTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCA                                               <  SRR4302540.2680747/94‑1 (MQ=60)
                                                  GGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTG                                           >  SRR4302540.4550288/1‑94 (MQ=60)
                                                     CGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAG                                        >  SRR4302540.8391907/1‑94 (MQ=60)
                                                      GGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGA                                       >  SRR4302540.7687687/1‑94 (MQ=60)
                                                      GGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGA                                       <  SRR4302540.3491512/94‑1 (MQ=60)
                                                       GATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAG                                      <  SRR4302540.6208071/94‑1 (MQ=60)
                                                       GATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAG                                      <  SRR4302540.5274356/94‑1 (MQ=60)
                                                        ATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGG                                     <  SRR4302540.1364798/94‑1 (MQ=60)
                                                        ATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGG                                     >  SRR4302540.9726152/1‑94 (MQ=60)
                                                         TTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGC                                    <  SRR4302540.7565729/94‑1 (MQ=60)
                                                          TATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCG                                   <  SRR4302540.857761/94‑1 (MQ=60)
                                                          TATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCG                                   <  SRR4302540.381686/94‑1 (MQ=60)
                                                           ATCGAGCTTCATGCCCGGCACGTACCCGACTTCCGCGGGACCTTACAGTCACATGAACATCAGGCGCT‑GTCTGGTGCTCACCTGAAGAGGCGCT                                 <  SRR4302540.5831606/94‑1 (MQ=60)
                                                           ATCCATCTTCATGCCTGGCACGTACCGGACTCCGGCGGGACGTTACAGGCACATGAACATCAGGCGCT‑GTCTGGTGCTCACCTGAAGAGGCGCT                                 <  SRR4302540.5831607/94‑1 (MQ=60)
                                                            TCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCT                                 <  SRR4302540.931493/94‑1 (MQ=60)
                                                             CCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACGTGAAGAGGGGCTG                                >  SRR4302540.2567129/1‑94 (MQ=60)
                                                             CCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTG                                <  SRR4302540.5937461/94‑1 (MQ=60)
                                                             CCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTG                                >  SRR4302540.400064/1‑94 (MQ=60)
                                                              CATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGC                               >  SRR4302540.2502060/1‑94 (MQ=60)
                                                               ATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCA                              >  SRR4302540.9208783/1‑94 (MQ=60)
                                                               ATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGAACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGCAGAGGCGCTGCA                              >  SRR4302540.925744/1‑94 (MQ=60)
                                                                 CTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTTCCCTGACGGGGCGCTGCAAT                            >  SRR4302540.7925396/1‑94 (MQ=60)
                                                                 CTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAAT                            <  SRR4302540.2466393/94‑1 (MQ=60)
                                                                 CTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAAT                            >  SRR4302540.7925395/1‑94 (MQ=60)
                                                                   TCATTCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATAT                          <  SRR4302540.7402921/94‑1 (MQ=60)
                                                                   TCATGGCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATAT                          <  SRR4302540.7402920/94‑1 (MQ=60)
                                                                   TCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATAT                          <  SRR4302540.6227609/94‑1 (MQ=60)
                                                                   TCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATAT                          <  SRR4302540.440478/94‑1 (MQ=60)
                                                                   TCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATAT                          <  SRR4302540.4203371/94‑1 (MQ=60)
                                                                     ATGCCTGGCACGTACCCGCCTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCC                        <  SRR4302540.2794516/94‑1 (MQ=60)
                                                                     ATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCC                        <  SRR4302540.7261216/94‑1 (MQ=60)
                                                                        CCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCT                     >  SRR4302540.5815863/1‑94 (MQ=60)
                                                                         CTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTG                    <  SRR4302540.9121939/94‑1 (MQ=60)
                                                                         CTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTG                    <  SRR4302540.7974147/94‑1 (MQ=60)
                                                                         CTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTG                    <  SRR4302540.5950585/94‑1 (MQ=60)
                                                                          TGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGG                   <  SRR4302540.5359570/94‑1 (MQ=60)
                                                                           GGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGC                  <  SRR4302540.9207321/94‑1 (MQ=60)
                                                                             CACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCC                >  SRR4302540.6452763/1‑94 (MQ=60)
                                                                              ACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCC               <  SRR4302540.8497172/94‑1 (MQ=60)
                                                                              ACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCC               >  SRR4302540.6096663/1‑94 (MQ=60)
                                                                               CGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCT              >  SRR4302540.1403703/1‑94 (MQ=60)
                                                                               CGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCT              >  SRR4302540.8516238/1‑94 (MQ=60)
                                                                               CGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCT              >  SRR4302540.8516239/1‑94 (MQ=60)
                                                                               CGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCT              >  SRR4302540.1403704/1‑94 (MQ=60)
                                                                               CGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCT              <  SRR4302540.1907069/94‑1 (MQ=60)
                                                                                GTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTG             >  SRR4302540.4101905/1‑94 (MQ=60)
                                                                                GTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTG             <  SRR4302540.3872613/94‑1 (MQ=60)
                                                                                GTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTG             >  SRR4302540.9625902/1‑94 (MQ=60)
                                                                                GTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTG             >  SRR4302540.3864906/1‑94 (MQ=60)
                                                                                GTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGGGCTTACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTG             >  SRR4302540.4223849/1‑94 (MQ=60)
                                                                                 TACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGC            >  SRR4302540.4018890/1‑94 (MQ=60)
                                                                                 TACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGC            >  SRR4302540.3540806/1‑94 (MQ=60)
                                                                                  ACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCT           <  SRR4302540.7190796/94‑1 (MQ=60)
                                                                                  ACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCT           >  SRR4302540.2287091/1‑94 (MQ=60)
                                                                                   CCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTG          >  SRR4302540.771894/1‑94 (MQ=60)
                                                                                    CCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGA         >  SRR4302540.1822081/1‑94 (MQ=60)
                                                                                     CGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGAC        <  SRR4302540.4165667/94‑1 (MQ=60)
                                                                                      GACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACA       >  SRR4302540.1190814/1‑94 (MQ=60)
                                                                                       CCTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACAT      <  SRR4302540.1110752/94‑1 (MQ=60)
                                                                                       ACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACAT      <  SRR4302540.1167046/94‑1 (MQ=60)
                                                                                       ACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACAT      <  SRR4302540.10044987/94‑1 (MQ=60)
                                                                                        CTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATC     >  SRR4302540.1763287/1‑94 (MQ=60)
                                                                                         TTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTC    <  SRR4302540.9158106/94‑1 (MQ=60)
                                                                                         TTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTC    <  SRR4302540.811873/94‑1 (MQ=60)
                                                                                           CCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCA  >  SRR4302540.3121556/1‑94 (MQ=60)
                                                                                             |                                                                                           
TCGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCA  >  NC_000913/1839689‑1839873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑