Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,839,782 A→G H90R (CAC→CGC)  b1759 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,839,7820AG100.0% 578.4 / NA 180H90R (CAC→CGC) b1759hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (100/80);  total (100/80)

Only 100 of 186 total aligned reads displayed.

AAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATT  >  NC_000913/1839692‑1839870
                                                                                          |                                                                                        
 aGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGTAGTTTCGGGGCGGATTATCAATCTTCATGCCTGGGACGTAACCGGCTTCCGCgg                                                                                       >  2:5799933/1‑93 (MQ=255)
  gCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCggg                                                                                      >  1:5609650/1‑93 (MQ=255)
      cTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGt                                                                                  >  2:5263991/1‑93 (MQ=255)
       tgtgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGtt                                                                                 <  2:5524423/93‑1 (MQ=255)
       tgtgGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGtt                                                                                 <  1:3718090/93‑1 (MQ=255)
          gggTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTAcg                                                                              >  1:3294421/1‑92 (MQ=255)
            gTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAgg                                                                            >  1:4995724/1‑93 (MQ=255)
            gTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAgg                                                                            <  1:1331874/93‑1 (MQ=255)
            gTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAgg                                                                            >  2:3962638/1‑93 (MQ=255)
              gAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGca                                                                          <  2:3474755/93‑1 (MQ=255)
              gAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGca                                                                          >  1:2132879/1‑93 (MQ=255)
              gAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGca                                                                          >  2:4099039/1‑93 (MQ=255)
                atatGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGcaca                                                                        <  2:5986109/93‑1 (MQ=255)
                atatGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGcaca                                                                        <  1:2026899/93‑1 (MQ=255)
                 tatGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACAt                                                                       >  1:3208469/1‑93 (MQ=255)
                  atGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATg                                                                      <  1:510207/93‑1 (MQ=255)
                   tGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGa                                                                     <  2:4187007/93‑1 (MQ=255)
                   tGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGa                                                                     <  1:5688441/93‑1 (MQ=255)
                   tGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGa                                                                     >  1:4834605/1‑93 (MQ=255)
                    gTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGaa                                                                    >  1:2002380/1‑93 (MQ=255)
                     ttGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAAc                                                                   >  2:5979926/1‑93 (MQ=255)
                      tGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACa                                                                  <  1:3607809/93‑1 (MQ=255)
                        ccagccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATc                                                                >  2:3616681/1‑93 (MQ=255)
                        ccagccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATc                                                                <  2:2567833/93‑1 (MQ=255)
                        ccagccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATc                                                                <  2:2383349/93‑1 (MQ=255)
                         cagccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCa                                                               >  1:5898741/1‑93 (MQ=255)
                          agccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAg                                                              <  2:1407941/93‑1 (MQ=255)
                          agccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAg                                                              >  2:5884401/1‑93 (MQ=255)
                          agccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAg                                                              <  1:341649/93‑1 (MQ=255)
                           gccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAgg                                                             >  1:5247943/1‑93 (MQ=255)
                           gccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAgg                                                             >  1:4661961/1‑93 (MQ=255)
                           gccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAgg                                                             >  2:1508168/1‑93 (MQ=255)
                            ccaTCAGCGAGAAGTTTCGGGTCGGATTATCCATCCTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGgc                                                            >  2:1073524/1‑93 (MQ=255)
                            ccaTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGgc                                                            <  1:5159810/93‑1 (MQ=255)
                              aTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGgcgc                                                          >  2:5581408/1‑93 (MQ=255)
                              aTCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGgcgc                                                          >  2:4990315/1‑93 (MQ=255)
                               tCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGct                                                         >  2:3227104/1‑93 (MQ=255)
                               tCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGct                                                         <  2:581859/93‑1 (MQ=255)
                                 aGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctgg                                                       <  1:2363286/93‑1 (MQ=255)
                                  gCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggt                                                      >  2:5743048/1‑93 (MQ=255)
                                  gCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggt                                                      >  2:2226777/1‑93 (MQ=255)
                                  gCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggt                                                      >  2:3400108/1‑93 (MQ=255)
                                   cGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtc                                                     <  2:3106222/93‑1 (MQ=255)
                                    gagaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtct                                                    <  2:6212521/93‑1 (MQ=255)
                                     agaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctg                                                   <  2:4583703/93‑1 (MQ=255)
                                     agaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctg                                                   >  1:2809890/1‑93 (MQ=255)
                                     agaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctg                                                   >  2:218020/1‑93 (MQ=255)
                                     agaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctg                                                   >  1:1193943/1‑93 (MQ=255)
                                      gaAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGctggtctgg                                                  >  2:1225251/1‑93 (MQ=255)
                                              ggggCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCAcc                                          >  1:3461213/1‑93 (MQ=255)
                                              ggggCGGATTATCCATCTTCATGCCTGGCACGTACACGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCAcc                                          <  1:240625/93‑1 (MQ=255)
                                                ggCTGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTg                                        <  2:1773071/93‑1 (MQ=255)
                                                ggCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGTCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTg                                        >  1:955605/1‑93 (MQ=255)
                                                ggCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTg                                        <  1:2612546/93‑1 (MQ=255)
                                                 gCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGa                                       <  1:1823750/93‑1 (MQ=255)
                                                  cGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGaa                                      <  2:2571537/93‑1 (MQ=255)
                                                  cGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGaa                                      <  1:6084515/93‑1 (MQ=255)
                                                  cGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGaa                                      >  2:1685518/1‑93 (MQ=255)
                                                   ggATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAag                                     <  2:815820/93‑1 (MQ=255)
                                                   ggATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAag                                     >  2:5806411/1‑93 (MQ=255)
                                                    gATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAaga                                    <  2:2473001/93‑1 (MQ=255)
                                                    gATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAaga                                    >  2:5722336/1‑93 (MQ=255)
                                                    gATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAaga                                    >  1:1679496/1‑93 (MQ=255)
                                                      ttATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAgg                                  <  1:6035037/93‑1 (MQ=255)
                                                        aTCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGgcg                                >  1:2750044/1‑93 (MQ=255)
                                                         tCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGgcgc                               <  2:1587648/93‑1 (MQ=255)
                                                          ccATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCt                              <  1:4753218/93‑1 (MQ=255)
                                                           cATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTg                             >  1:3922798/1‑93 (MQ=255)
                                                            aTCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGc                            >  1:2972333/1‑93 (MQ=255)
                                                             tCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCa                           >  1:1065684/1‑93 (MQ=255)
                                                             tCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGCTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCa                           >  2:3892441/1‑93 (MQ=255)
                                                              cTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCaa                          <  1:5287195/93‑1 (MQ=255)
                                                               ttCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAat                         >  2:3050997/1‑93 (MQ=255)
                                                               ttCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCCGCAat                         >  1:1159809/1‑93 (MQ=255)
                                                                tCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAata                        <  1:1857084/93‑1 (MQ=255)
                                                                  aTGCCTGGCACGTTCCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATc                      <  2:63402/93‑1 (MQ=255)
                                                                  aTGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATc                      >  1:1627023/1‑93 (MQ=255)
                                                                  aTGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATc                      <  1:4403809/93‑1 (MQ=255)
                                                                  aTGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATc                      <  2:4240979/93‑1 (MQ=255)
                                                                   tGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATcc                     <  1:1558977/93‑1 (MQ=255)
                                                                     ccTGGCACTTCCCCTACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTTAAGAGGCGCTCCAATATcctc                   <  2:2579758/93‑3 (MQ=255)
                                                                     ccTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGc                   <  1:4776548/93‑1 (MQ=255)
                                                                      cTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCt                  >  1:1124451/1‑93 (MQ=255)
                                                                          cACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGcc              >  2:5386813/1‑93 (MQ=255)
                                                                          cACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGcc              <  1:3181273/93‑1 (MQ=255)
                                                                           ccGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGccc             <  1:578789/92‑1 (MQ=255)
                                                                           aCGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGccc             >  1:285562/1‑93 (MQ=255)
                                                                             gTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCct           >  1:730227/1‑93 (MQ=255)
                                                                              tACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctg          >  1:3728491/1‑93 (MQ=255)
                                                                              tACCCGACGTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctg          >  2:6152176/1‑93 (MQ=255)
                                                                               aCCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctgc         <  1:6251965/93‑1 (MQ=255)
                                                                               aCCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctgc         >  1:4324624/1‑93 (MQ=255)
                                                                                accGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctgct        >  1:5945494/2‑93 (MQ=255)
                                                                                 ccGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCctgctg       >  2:3366447/1‑93 (MQ=255)
                                                                                  cGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGa      >  1:3139634/1‑93 (MQ=255)
                                                                                  cGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGa      <  1:4096267/93‑1 (MQ=255)
                                                                                  cGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGa      >  2:279841/1‑93 (MQ=255)
                                                                                   gACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGAc     >  2:3605420/1‑93 (MQ=255)
                                                                                    aCTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACa    <  1:1041939/93‑1 (MQ=255)
                                                                                     cTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACAt   >  2:676709/1‑93 (MQ=255)
                                                                                          |                                                                                        
AAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATT  >  NC_000913/1839692‑1839870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATT  >  NC_000913/1839690‑1839875
                                                                                            |                                                                                             
CGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGC                                                                                              >  SRR4302533.6219297/1‑94 (MQ=60)
 GAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCG                                                                                             <  SRR4302533.6239920/94‑1 (MQ=60)
   AGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGG                                                                                           >  SRR4302533.5643551/1‑94 (MQ=60)
         TGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTA                                                                                     <  SRR4302533.3740909/94‑1 (MQ=60)
          GTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTAC                                                                                    >  SRR4302533.2334300/1‑94 (MQ=60)
           TGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACG                                                                                   >  SRR4302533.3314754/1‑94 (MQ=60)
           TGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACA                                                                                   <  SRR4302533.1124340/94‑1 (MQ=60)
           TGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACA                                                                                   >  SRR4302533.4107304/1‑94 (MQ=60)
           TGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACA                                                                                   <  SRR4302533.3631339/94‑1 (MQ=60)
             GGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGG                                                                                 >  SRR4302533.5026009/1‑94 (MQ=60)
              GTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGC                                                                                <  SRR4302533.1339864/94‑1 (MQ=60)
               TGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCA                                                                               >  SRR4302533.2146034/1‑94 (MQ=60)
                GAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCAC                                                                              >  SRR4302533.1835787/1‑94 (MQ=60)
                GAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCAC                                                                              >  SRR4302533.1697913/1‑94 (MQ=60)
                 AATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACA                                                                             >  SRR4302533.309323/1‑94 (MQ=60)
                  ATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACAT                                                                            >  SRR4302533.3228230/1‑94 (MQ=60)
                  ATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACAT                                                                            <  SRR4302533.2039413/94‑1 (MQ=60)
                    ATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGA                                                                          <  SRR4302533.2104854/94‑1 (MQ=60)
                    ATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGA                                                                          >  SRR4302533.4863906/1‑94 (MQ=60)
                    ATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGA                                                                          <  SRR4302533.513238/94‑1 (MQ=60)
                     TGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAA                                                                         <  SRR4302533.5722800/94‑1 (MQ=60)
                     TGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAA                                                                         >  SRR4302533.2014710/1‑94 (MQ=60)
                      GTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAAC                                                                        <  SRR4302533.3529384/94‑1 (MQ=60)
                        TGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACAT                                                                      <  SRR4302533.3630020/94‑1 (MQ=60)
                        TGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACAT                                                                      <  SRR4302533.1554789/94‑1 (MQ=60)
                          CCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCA                                                                    >  SRR4302533.5934365/1‑94 (MQ=60)
                           CAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAG                                                                   <  SRR4302533.1138294/94‑1 (MQ=60)
                           CAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAG                                                                   <  SRR4302533.258363/94‑1 (MQ=60)
                            AGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGG                                                                  >  SRR4302533.4690211/1‑94 (MQ=60)
                            AGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGG                                                                  >  SRR4302533.5279492/1‑94 (MQ=60)
                            AGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGG                                                                  <  SRR4302533.343735/94‑1 (MQ=60)
                              CCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCG                                                                <  SRR4302533.5190952/94‑1 (MQ=60)
                               CATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGC                                                               >  SRR4302533.3201176/1‑94 (MQ=60)
                               CATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGC                                                               <  SRR4302533.4318976/94‑1 (MQ=60)
                                ATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCT                                                              >  SRR4302533.1204267/1‑94 (MQ=60)
                                ATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCT                                                              <  SRR4302533.4421340/94‑1 (MQ=60)
                                  CAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGG                                                            >  SRR4302533.1195311/1‑94 (MQ=60)
                                   AGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGT                                                           <  SRR4302533.2377907/94‑1 (MQ=60)
                                      GAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGCACATCAGGCGCTGGTCTG                                                        >  SRR4302533.4923910/1‑94 (MQ=60)
                                      GAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTG                                                        >  SRR4302533.2827181/1‑94 (MQ=60)
                                      GAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTG                                                        >  SRR4302533.6010955/1‑94 (MQ=60)
                                      GAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTG                                                        >  SRR4302533.1201121/1‑94 (MQ=60)
                                       AGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGG                                                       >  SRR4302533.159790/1‑94 (MQ=60)
                                        GAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGCACATCAGGCGCTGGTCTGGT                                                      >  SRR4302533.57554/1‑94 (MQ=60)
                                        GAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGT                                                      >  SRR4302533.5027027/1‑94 (MQ=60)
                                        GAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGT                                                      <  SRR4302533.519245/94‑1 (MQ=60)
                                        GAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGT                                                      >  SRR4302533.884782/1‑94 (MQ=60)
                                            TTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTC                                                  <  SRR4302533.3259735/94‑1 (MQ=60)
                                               CGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACC                                               >  SRR4302533.3482578/1‑94 (MQ=60)
                                                GGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCT                                              >  SRR4302533.3430165/1‑94 (MQ=60)
                                                GGGGCGGATTATCCATCTTCATGCCTGGCACGTACACGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCT                                              <  SRR4302533.242119/94‑1 (MQ=60)
                                                 GGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGTCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTG                                             >  SRR4302533.961216/1‑94 (MQ=60)
                                                 GGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTG                                             >  SRR4302533.2016159/1‑94 (MQ=60)
                                                  GGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGA                                            <  SRR4302533.2628581/94‑1 (MQ=60)
                                                   GCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAA                                           <  SRR4302533.1834895/94‑1 (MQ=60)
                                                   GCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAA                                           <  SRR4302533.4819637/94‑1 (MQ=60)
                                                    CGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAG                                          <  SRR4302533.6121303/94‑1 (MQ=60)
                                                     TGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGA                                         <  SRR4302533.4509414/94‑1 (MQ=60)
                                                     GGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGA                                         >  SRR4302533.1689669/1‑94 (MQ=60)
                                                        TTATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGC                                      <  SRR4302533.6071610/94‑1 (MQ=60)
                                                         TATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCG                                     >  SRR4302533.2766903/1‑94 (MQ=60)
                                                         TATCCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCG                                     <  SRR4302533.4754917/94‑1 (MQ=60)
                                                            CCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTG                                  >  SRR4302533.2780229/1‑94 (MQ=60)
                                                            CCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTG                                  >  SRR4302533.3946750/1‑94 (MQ=60)
                                                            CCATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTG                                  <  SRR4302533.4782033/94‑1 (MQ=60)
                                                             CATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGC                                 >  SRR4302533.2990521/1‑94 (MQ=60)
                                                              ATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCA                                >  SRR4302533.1991019/1‑94 (MQ=60)
                                                              ATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCA                                >  SRR4302533.1071943/1‑94 (MQ=60)
                                                              ATCTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCA                                >  SRR4302533.2952447/1‑94 (MQ=60)
                                                                CTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAAT                              <  SRR4302533.5318863/94‑1 (MQ=60)
                                                                CTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAAT                              >  SRR4302533.6112759/1‑94 (MQ=60)
                                                                CTTCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCCGCAAT                              >  SRR4302533.1166768/1‑94 (MQ=60)
                                                                  TCATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATAT                            <  SRR4302533.1868411/94‑1 (MQ=60)
                                                                   CATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATC                           >  SRR4302533.1636876/1‑94 (MQ=60)
                                                                    ATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCC                          >  SRR4302533.6160302/1‑94 (MQ=60)
                                                                    ATGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCC                          <  SRR4302533.4430398/94‑1 (MQ=60)
                                                                     TGCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCG                         <  SRR4302533.1568364/94‑1 (MQ=60)
                                                                      GCCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGC                        <  SRR4302533.3930783/94‑1 (MQ=60)
                                                                       CCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCT                       <  SRR4302533.4805485/94‑1 (MQ=60)
                                                                       CCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCT                       <  SRR4302533.2868134/94‑1 (MQ=60)
                                                                       CCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCT                       >  SRR4302533.1131124/1‑94 (MQ=60)
                                                                       CCTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCT                       <  SRR4302533.3449105/94‑1 (MQ=60)
                                                                        CTGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTG                      <  SRR4302533.5286616/94‑1 (MQ=60)
                                                                         TGGCACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGG                     >  SRR4302533.5149907/1‑94 (MQ=60)
                                                                            CACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCC                  >  SRR4302533.287306/1‑94 (MQ=60)
                                                                            CACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCC                  <  SRR4302533.3200844/94‑1 (MQ=60)
                                                                             CCGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCC                 <  SRR4302533.582200/94‑1 (MQ=60)
                                                                             ACGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCC                 >  SRR4302533.2735365/1‑94 (MQ=60)
                                                                              CGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCT                >  SRR4302533.5905765/1‑94 (MQ=60)
                                                                              CGTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCT                >  SRR4302533.734532/1‑94 (MQ=60)
                                                                               GTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTG               >  SRR4302533.5962219/1‑94 (MQ=60)
                                                                               GTACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTG               >  SRR4302533.3751362/1‑94 (MQ=60)
                                                                                TACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGC              >  SRR4302533.4350668/1‑94 (MQ=60)
                                                                                 ACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCT             >  SRR4302533.5677780/1‑94 (MQ=60)
                                                                                 ACCCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCT             <  SRR4302533.6289363/94‑1 (MQ=60)
                                                                                 AACCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCT             >  SRR4302533.5981449/1‑94 (MQ=60)
                                                                                   CCGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGA           >  SRR4302533.3158935/1‑94 (MQ=60)
                                                                                    CGACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGAC          <  SRR4302533.4121204/94‑1 (MQ=60)
                                                                                      ACTTCCGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACAT        <  SRR4302533.1048065/94‑1 (MQ=60)
                                                                                           CGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCAT   >  SRR4302533.6330244/1‑94 (MQ=60)
                                                                                           CGCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCAT   >  SRR4302533.2432579/1‑94 (MQ=60)
                                                                                            GCGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATT  <  SRR4302533.3673253/94‑1 (MQ=60)
                                                                                            |                                                                                             
CGAAGCAACTGTGGGTGAATATGTTGCCAGCCATCAGCGAGAAGTTTCGGGGCGGATTATCCATCTTCATGCCTGGCACGTACCCGACTTCCACGGGACGTTACAGGCACATGAACATCAGGCGCTGGTCTGGTGCTCACCTGAAGAGGCGCTGCAATATCCGCTGGCCCCTGCTGACATTCCATT  >  NC_000913/1839690‑1839875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑