Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,863,065	G→A	A199V (GCC→GTC)	b1781 ←	putative aldehyde reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,863,065	0	G	A	99.6%	838.5 / NA	237	A199V (GCC→GTC)	b1781	putative aldehyde reductase
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (124/112); minor base T (1/0); total (125/112)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 246 total aligned reads displayed.

GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA  >  NC_000913/1862975‑1863154

gCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGAcc                                                                                         >  1:9372170/1‑93 (MQ=255)

gCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGGTTTTTAACAGTCCATTGCGCAACCGCCCGAcc                                                                                         >  1:7414475/1‑93 (MQ=255)

gCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCG‑TTTTTAACAGTCCATTGCGCAACCGCCCGACCt                                                                                        <  1:2237644/93‑1 (MQ=255)

 ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCt                                                                                        <  1:186908/93‑1 (MQ=255)

 ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCt                                                                                        <  1:2998146/93‑1 (MQ=255)

 ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCG‑TTTTTAACAGTCCATTGCGCAACCGCCCGACCTg                                                                                       <  2:2270582/93‑1 (MQ=255)

  caacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTg                                                                                       >  1:3888608/1‑93 (MQ=255)

  caacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGAGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTg                                                                                       >  1:6928719/1‑93 (MQ=255)

   aacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTgg                                                                                      >  2:1854941/1‑93 (MQ=255)

   aacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTgg                                                                                      >  1:4373455/1‑93 (MQ=255)

    acaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTggg                                                                                     >  2:975906/1‑93 (MQ=255)

    acaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTggg                                                                                     >  2:1512252/1‑93 (MQ=255)

      aaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCt                                                                                   >  2:6902038/1‑93 (MQ=255)

        tACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTaa                                                                                 >  1:2443233/1‑93 (MQ=255)

        tACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTaa                                                                                 >  2:5700643/1‑93 (MQ=255)

        tACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTaa                                                                                 >  1:5786212/1‑93 (MQ=255)

         aCTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAc                                                                                <  1:1025839/93‑1 (MQ=255)

         aCTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAc                                                                                >  2:3417918/1‑93 (MQ=255)

         aCTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAc                                                                                >  1:6601139/1‑93 (MQ=255)

         aCTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAc                                                                                <  1:6486406/93‑1 (MQ=255)

          cTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACg                                                                               <  1:3622298/93‑1 (MQ=255)

          cTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACg                                                                               >  1:1444860/1‑93 (MQ=255)

          cTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCG‑TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACgg                                                                              >  2:6467173/1‑93 (MQ=255)

            tgtgCCGCGATGATATTGTGAGCATGTGCAATTTCGTTGACTCCCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGa                                                                             <  2:7142118/93‑1 (MQ=255)

                 cgcgCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTa                                                                        <  1:9198157/93‑1 (MQ=255)

                  gcgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTaa                                                                       <  1:857035/93‑1 (MQ=255)

                  gcgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTaa                                                                       <  2:777205/93‑1 (MQ=255)

                   cgcTGATATTGTGAGCGTGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAg                                                                      <  2:5792904/93‑1 (MQ=255)

                    gcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGc                                                                     >  2:4629883/1‑93 (MQ=255)

                       gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt                                                                  >  2:8340453/1‑93 (MQ=255)

                       gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt                                                                  >  2:8800020/1‑93 (MQ=255)

                       gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt                                                                  >  2:2686560/1‑93 (MQ=255)

                         tatTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCa                                                                >  1:9303861/1‑93 (MQ=255)

                         taatgtgAATATGTCCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCACGACCTGGGCTATCGGACTGTAAGCCATCa                                                                <  2:8611685/90‑1 (MQ=255)

                          atTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAc                                                               >  1:2444098/1‑93 (MQ=255)

                          atTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAc                                                               >  1:7103011/1‑93 (MQ=255)

                           ttGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAcc                                                              >  2:5332495/1‑93 (MQ=255)

                           ttGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAcc                                                              <  1:4209258/93‑1 (MQ=255)

                           ttGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAcc                                                              >  1:1811214/1‑93 (MQ=255)

                              tgAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGc                                                           >  1:3981709/1‑93 (MQ=255)

                                 gCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATc                                                        <  1:6245536/93‑1 (MQ=255)

                                  cATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATct                                                       >  1:8735571/1‑93 (MQ=255)

                                   aTGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctg                                                      <  2:7911775/93‑1 (MQ=255)

                                   aTGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctg                                                      >  2:2661216/1‑93 (MQ=255)

                                    tgtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgc                                                     >  2:917183/1‑93 (MQ=255)

                                    tgtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgc                                                     >  2:8067580/1‑93 (MQ=255)

                                           tttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGcg                                              >  1:1352631/1‑92 (MQ=255)

                                           tttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCt                                              <  1:7560903/93‑1 (MQ=255)

                                           tttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCt                                              <  1:6040878/93‑1 (MQ=255)

                                           tttCGTTGACTACCGCG‑TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTg                                             <  2:9202783/93‑1 (MQ=255)

                                            ttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTg                                             <  1:4551114/93‑1 (MQ=255)

                                             tCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTgg                                            <  1:2601570/93‑1 (MQ=255)

                                              cGTTGACTACCGCG‑TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCa                                          <  2:485928/93‑1 (MQ=255)

                                               gTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCa                                          >  2:3609004/1‑93 (MQ=255)

                                               gTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCa                                          >  2:20872/1‑93 (MQ=255)

                                                 tGACTACCGCGTTTTTTAACAGTACATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTATGCCACCACCGGCATCTGCTGTTGCTGGCAcc                                        >  2:704443/1‑93 (MQ=255)

                                                    cTACCGCG‑TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAggg                                    <  1:4904925/93‑1 (MQ=255)

                                                      aCCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgggg                                   >  1:510393/1‑93 (MQ=255)

                                                      aCCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgggg                                   >  2:8697175/1‑93 (MQ=255)

                                                        cgcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAg                                 <  2:866790/93‑1 (MQ=255)

                                                         gcgTTTTTTAACAGTGCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGt                                <  2:6554718/93‑1 (MQ=255)

                                                         gcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGt                                >  2:1805799/1‑93 (MQ=255)

                                                          cgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTa                               >  1:2526958/1‑93 (MQ=255)

                                                          cgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTa                               <  2:4689737/93‑1 (MQ=255)

                                                          cgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTa                               <  2:4504525/93‑1 (MQ=255)

                                                          cgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTa                               <  1:6240304/93‑1 (MQ=255)

                                                            ttttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGa                             >  1:4297628/1‑93 (MQ=255)

                                                            ttttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGa                             >  2:2823260/1‑93 (MQ=255)

                                                            ttttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGa                             >  2:1441155/1‑93 (MQ=255)

                                                             tttttAACAGTCCATTGCGCAACCGGCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAt                            <  1:1109004/93‑1 (MQ=255)

                                                             tttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAt                            <  2:6769792/93‑1 (MQ=255)

                                                              ttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATc                           <  2:6246263/93‑1 (MQ=255)

                                                               tttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCg                          <  1:9668045/93‑1 (MQ=255)

                                                                ttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGt                         <  2:3639382/93‑1 (MQ=255)

                                                                   aCAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACt                      >  1:8437629/1‑93 (MQ=255)

                                                                   aCAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACt                      >  1:8040443/1‑93 (MQ=255)

                                                                   aCAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACt                      <  1:5373235/93‑1 (MQ=255)

                                                                    cAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTc                     >  2:3038813/1‑93 (MQ=255)

                                                                      gTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGTCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCaa                   >  1:5509757/1‑93 (MQ=255)

                                                                      gTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCaa                   <  1:2329987/93‑1 (MQ=255)

                                                                       tCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAt                  >  2:429467/1‑93 (MQ=255)

                                                                        ccATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAtt                 >  2:7243586/1‑93 (MQ=255)

                                                                        ccATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAtt                 >  1:494450/1‑93 (MQ=255)

                                                                        ccATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAtt                 >  2:1172279/1‑93 (MQ=255)

                                                                          aTTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTcc               <  2:8890286/93‑1 (MQ=255)

                                                                          aTTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTcc               <  2:8177275/93‑1 (MQ=255)

                                                                           ttGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTGCTCAGTTCCt              >  1:7491651/1‑93 (MQ=255)

                                                                            tGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTc             <  1:9425233/93‑1 (MQ=255)

                                                                            tGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTc             <  1:4712426/93‑1 (MQ=255)

                                                                            tGCGCAACAGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTc             <  1:7779111/93‑1 (MQ=255)

                                                                             gcggAACCGCCCGACCTGGTCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCg            <  1:4877903/93‑1 (MQ=255)

                                                                             gcgcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCg            <  2:722145/93‑1 (MQ=255)

                                                                              cgcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGt           >  2:9493942/1‑93 (MQ=255)

                                                                               gcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTg          >  1:4497422/1‑93 (MQ=255)

                                                                                cAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGa         >  2:7951715/1‑93 (MQ=255)

                                                                                cAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGa         <  1:1124594/93‑1 (MQ=255)

                                                                                   ccGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAcc      >  2:1285473/1‑93 (MQ=255)

                                                                                     gCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCCCCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgg    >  1:5745098/1‑92 (MQ=255)

                                                                                       ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga  >  1:6327142/1‑93 (MQ=255)

                                                                                       ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga  <  1:8840624/93‑1 (MQ=255)

GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA  >  NC_000913/1862975‑1863154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CACGCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGGT  >  NC_000913/1862972‑1863158

CACGCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGA                                                                                               <  SRR4302540.6951366/94‑1 (MQ=60)

CACGCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGA                                                                                               <  SRR4302540.60804/94‑1 (MQ=60)

CACGCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGA                                                                                               <  SRR4302540.8759561/94‑1 (MQ=60)

  CGCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACC                                                                                             >  SRR4302540.9483753/1‑94 (MQ=60)

  CGCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGGTTTTTAACAGTCCATTGCGCAACCGCCCGACC                                                                                             >  SRR4302540.7497061/1‑94 (MQ=60)

   GCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT                                                                                            >  SRR4302540.1230738/1‑94 (MQ=60)

   GCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT                                                                                            >  SRR4302540.497321/1‑94 (MQ=60)

   GCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT                                                                                            <  SRR4302540.4470269/94‑1 (MQ=60)

   GCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCG‑TTTTTAACAGTCCATTGCGCAACCGCCCGACCTG                                                                                           <  SRR4302540.2261708/94‑1 (MQ=60)

   GCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCG‑TTTTTAACAGTCCATTGCGCAACCACCCGACCTG                                                                                           <  SRR4302540.1144823/94‑1 (MQ=60)

    CCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTG                                                                                           >  SRR4302540.3930835/1‑94 (MQ=60)

    CCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTG                                                                                           <  SRR4302540.3031177/94‑1 (MQ=60)

    CCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTG                                                                                           <  SRR4302540.188765/94‑1 (MQ=60)

    CCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGAGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTG                                                                                           >  SRR4302540.7005822/1‑94 (MQ=60)

     CAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGG                                                                                          >  SRR4302540.7291510/1‑94 (MQ=60)

     CAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGG                                                                                          >  SRR4302540.4420952/1‑94 (MQ=60)

        CAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCT                                                                                       <  SRR4302540.6429900/94‑1 (MQ=60)

          ATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAA                                                                                     >  SRR4302540.5850131/1‑94 (MQ=60)

          ATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAA                                                                                     >  SRR4302540.2469545/1‑94 (MQ=60)

           TACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAC                                                                                    <  SRR4302540.6310854/94‑1 (MQ=60)

           TACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAC                                                                                    >  SRR4302540.6674236/1‑94 (MQ=60)

            ACTTGTGTCCCGCGC‑‑ATATTGTGAGCATGTGCCAGTGTGTTGACTACCGCGTTTTTTAACAGTCCATTGCCCAACCGCCCGACCGGGGCTAACG                                                                                   <  SRR4302540.9275589/94‑1 (MQ=42)

            ACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG                                                                                   <  SRR4302540.1036245/94‑1 (MQ=60)

            ACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG                                                                                   >  SRR4302540.1460566/1‑94 (MQ=60)

            ACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG                                                                                   <  SRR4302540.6558540/94‑1 (MQ=60)

             CTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGG                                                                                  >  SRR4302540.6871092/1‑94 (MQ=60)

             CTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGG                                                                                  <  SRR4302540.3661926/94‑1 (MQ=60)

                     CAGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTA                                                                            <  SRR4302540.4052378/94‑1 (MQ=60)

                      CGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAA                                                                           <  SRR4302540.6131204/94‑1 (MQ=60)

                      CGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAA                                                                           <  SRR4302540.9308495/94‑1 (MQ=60)

                       GCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAG                                                                          <  SRR4302540.866137/94‑1 (MQ=60)

                       GCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAG                                                                          <  SRR4302540.7663411/94‑1 (MQ=60)

                        CGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGC                                                                         <  SRR4302540.6433616/94‑1 (MQ=60)

                        CGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGC                                                                         <  SRR4302540.7093299/94‑1 (MQ=60)

                          CTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCA                                                                       <  SRR4302540.1374453/94‑1 (MQ=60)

                          CTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCA                                                                       <  SRR4302540.254052/94‑1 (MQ=60)

                          CTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCA                                                                       >  SRR4302540.4365527/1‑94 (MQ=60)

                           TGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAT                                                                      >  SRR4302540.9704158/1‑94 (MQ=60)

                           TGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTGTTAACAGTCCATTGCGCAGCCGCCCGACCTGGGCTAACGGACTGTAAGCCAT                                                                      <  SRR4302540.9486059/94‑1 (MQ=60)

                             ATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCA                                                                    >  SRR4302540.9414992/1‑94 (MQ=60)

                             ATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCA                                                                    >  SRR4302540.9414988/1‑94 (MQ=60)

                             ATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCA                                                                    >  SRR4302540.299988/1‑94 (MQ=60)

                              TATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAC                                                                   >  SRR4302540.7182041/1‑94 (MQ=60)

                              TATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAC                                                                   >  SRR4302540.2470421/1‑94 (MQ=60)

                              TATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAC                                                                   >  SRR4302540.2470420/1‑94 (MQ=60)

                               ATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACC                                                                  >  SRR4302540.1830970/1‑94 (MQ=60)

                                TTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCG                                                                 <  SRR4302540.4255085/94‑1 (MQ=60)

                                TTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCG                                                                 <  SRR4302540.4255084/94‑1 (MQ=60)

                                  GTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGC                                                               >  SRR4302540.4024594/1‑94 (MQ=60)

                                   TGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCA                                                              <  SRR4302540.3884525/94‑1 (MQ=60)

                                   TGAGCATGTGCAATTTCGTTGACTACCGCG‑TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCAT                                                             <  SRR4302540.4581816/94‑1 (MQ=60)

                                     AGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATC                                                            <  SRR4302540.6592442/94‑1 (MQ=60)

                                      GCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCT                                                           <  SRR4302540.6315043/94‑1 (MQ=60)

                                      GCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCT                                                           >  SRR4302540.8837003/1‑94 (MQ=60)

                                      GCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCT                                                           >  SRR4302540.1857977/1‑94 (MQ=60)

                                       CATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTG                                                          >  SRR4302540.7553462/1‑94 (MQ=60)

                                        ATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGC                                                         >  SRR4302540.1807416/1‑94 (MQ=60)

                                        ATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGC                                                         >  SRR4302540.5940096/1‑94 (MQ=60)

                                        ATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGACATCACCGGCATCTGC                                                         >  SRR4302540.4889400/1‑94 (MQ=60)

                                            TCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTT                                                     <  SRR4302540.2003141/94‑1 (MQ=60)

                                            GCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTT                                                     >  SRR4302540.4947394/1‑94 (MQ=60)

                                            GCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTT                                                     <  SRR4302540.8799737/94‑1 (MQ=60)

                                            GCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCACCTGCTGTT                                                     >  SRR4302540.4947393/1‑94 (MQ=60)

                                              AATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGC                                                   <  SRR4302540.6382000/94‑1 (MQ=60)

                                               ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT                                                  <  SRR4302540.8708344/94‑1 (MQ=60)

                                               ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCG                                                  >  SRR4302540.1366862/1‑94 (MQ=60)

                                                TTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTG                                                 <  SRR4302540.9430638/94‑1 (MQ=60)

                                                TTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTG                                                 <  SRR4302540.6107965/94‑1 (MQ=60)

                                                TTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTG                                                 <  SRR4302540.7645705/94‑1 (MQ=60)

                                                 TTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGG                                                >  SRR4302540.1091427/1‑94 (MQ=60)

                                                 TTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGG                                                <  SRR4302540.4600334/94‑1 (MQ=60)

                                                  TCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGC                                               <  SRR4302540.5138258/94‑1 (MQ=60)

                                                  TCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGC                                               <  SRR4302540.2629632/94‑1 (MQ=60)

                                                     TTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACC                                            <  SRR4302540.8206626/94‑1 (MQ=60)

                                                      TGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCA                                           <  SRR4302540.355037/94‑1 (MQ=60)

                                                       GACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAG                                          <  SRR4302540.5665852/94‑1 (MQ=60)

                                                        ACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGG                                         <  SRR4302540.8856788/94‑1 (MQ=60)

                                                         CTACCGCG‑TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGG                                       >  SRR4302540.2508304/1‑94 (MQ=60)

                                                         CTACCGCG‑TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGG                                       <  SRR4302540.4957705/94‑1 (MQ=60)

                                                          TACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGG                                       >  SRR4302540.515874/1‑94 (MQ=60)

                                                            CCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAG                                     >  SRR4302540.5949090/1‑94 (MQ=60)

                                                              GCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTA                                   >  SRR4302540.569512/1‑94 (MQ=60)

                                                              GCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTA                                   >  SRR4302540.2554231/1‑94 (MQ=60)

                                                              GCG‑TTTTTAACAGTCAATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAACAGGGGAGTAG                                  <  SRR4302540.9078590/94‑1 (MQ=60)

                                                               CGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAG                                  <  SRR4302540.2406481/94‑1 (MQ=60)

                                                               CGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAG                                  <  SRR4302540.6309744/94‑1 (MQ=60)

                                                               CGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAG                                  <  SRR4302540.3537710/94‑1 (MQ=60)

                                                                GTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGA                                 <  SRR4302540.9324889/94‑1 (MQ=60)

                                                                GTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGA                                 >  SRR4302540.4344401/1‑94 (MQ=60)

                                                                GTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGGAGA                                 >  SRR4302540.4344399/1‑94 (MQ=60)

                                                                 TTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAT                                <  SRR4302540.2604051/94‑1 (MQ=60)

                                                                  TTTTTAACAGTCCATTGCGCAACCGGCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATC                               <  SRR4302540.1120467/94‑1 (MQ=60)

                                                                  TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATC                               <  SRR4302540.8260321/94‑1 (MQ=60)

                                                                  GTTTTAACAGTCCAGTGCTCAGCCGCCCTTGCTGGGCTAACGGACGGTACGCCAGCACCGGCATCTGCTCTTGCTGGCACCAGGGGAGTAGATC                               <  SRR4302540.8260322/94‑1 (MQ=40)

                                                                    TTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGT                             <  SRR4302540.9781839/94‑1 (MQ=60)

                                                                     TTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTA                            >  SRR4302540.63060/1‑94 (MQ=60)

                                                                      TAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTAC                           <  SRR4302540.5436134/94‑1 (MQ=60)

                                                                       AACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACT                          >  SRR4302540.8133874/1‑94 (MQ=60)

                                                                       AACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACT                          >  SRR4302540.8535584/1‑94 (MQ=60)

                                                                        ACAGTCCATTGCGCAACCGCTCGACCTGGGCTAACGGACTGTAAGCCATCACTGGCATCTGCTGTTGCTGTCACCAGGGGAGTAGATCGTACTC                         >  SRR4302540.9070911/1‑94 (MQ=60)

                                                                        ACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTC                         <  SRR4302540.5432303/94‑1 (MQ=60)

                                                                          AGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGTCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAA                       >  SRR4302540.5570440/1‑94 (MQ=60)

                                                                          AGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGCAGATCGTACTCAA                       >  SRR4302540.9969124/1‑94 (MQ=60)

                                                                           GTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAT                      <  SRR4302540.2355090/94‑1 (MQ=60)

                                                                           GTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAT                      <  SRR4302540.2355091/94‑1 (MQ=60)

                                                                           GTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAT                      >  SRR4302540.5343895/1‑94 (MQ=60)

                                                                            TCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCGCCAGGGGAGTAGATCGTACTCAATT                     <  SRR4302540.4746770/94‑1 (MQ=60)

                                                                            TCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATT                     >  SRR4302540.499751/1‑94 (MQ=60)

                                                                             CCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTC                    <  SRR4302540.6885531/94‑1 (MQ=60)

                                                                               ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTGCTCAGTTCCT                  >  SRR4302540.7575300/1‑94 (MQ=60)

                                                                               ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCT                  >  SRR4302540.7519592/1‑94 (MQ=60)

                                                                               ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCT                  >  SRR4302540.8109404/1‑94 (MQ=60)

                                                                               ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCT                  >  SRR4302540.7575301/1‑94 (MQ=60)

                                                                                 TGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCG                <  SRR4302540.3947884/94‑1 (MQ=60)

                                                                                 TGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCG                <  SRR4302540.9537230/94‑1 (MQ=60)

                                                                                 TGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCG                <  SRR4302540.4762783/94‑1 (MQ=60)

                                                                                 TGCGCAACAGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCG                <  SRR4302540.7870044/94‑1 (MQ=60)

                                                                                  gcctAACCGCCCGACCTGGGCTAACGGACGGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGT               <  SRR4302540.4609309/90‑1 (MQ=60)

                                                                                  GCGGAACCGCCCGACCTGGTCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGT               <  SRR4302540.4930271/94‑1 (MQ=60)

                                                                                  GCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGT               <  SRR4302540.779015/94‑1 (MQ=60)

                                                                                   CGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTG              >  SRR4302540.4546180/1‑94 (MQ=60)

                                                                                     CAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAA            <  SRR4302540.1136287/94‑1 (MQ=60)

                                                                                     CAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAA            >  SRR4302540.3970025/1‑94 (MQ=60)

                                                                                     CAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAA            <  SRR4302540.1136288/94‑1 (MQ=60)

                                                                                     CAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAA            >  SRR4302540.224213/1‑94 (MQ=60)

                                                                                      AACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAC           >  SRR4302540.2278211/1‑94 (MQ=60)

                                                                                         CGCCCGACCTGGGCTAACGGTCTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACTGA        >  SRR4302540.5808445/1‑94 (MQ=60)

                                                                                         CGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCCCCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGG        >  SRR4302540.5808444/1‑94 (MQ=60)

                                                                                          GCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAG       >  SRR4302540.5293686/1‑94 (MQ=60)

                                                                                           CCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA      >  SRR4302540.6397603/1‑94 (MQ=60)

                                                                                           CCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA      <  SRR4302540.8594561/94‑1 (MQ=60)

                                                                                           CCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA      <  SRR4302540.4544918/94‑1 (MQ=60)

                                                                                            CCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGAT     <  SRR4302540.1678735/94‑1 (MQ=60)

                                                                                            CCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGAT     <  SRR4302540.8942881/94‑1 (MQ=60)

                                                                                             CGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATG    >  SRR4302540.2551648/1‑94 (MQ=60)

                                                                                              GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG   >  SRR4302540.2644676/1‑94 (MQ=60)

                                                                                              GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG   >  SRR4302540.5613546/1‑94 (MQ=60)

                                                                                              GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG   <  SRR4302540.9891700/94‑1 (MQ=60)

                                                                                               ACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGGT  >  SRR4302540.3544647/1‑94 (MQ=60)

CACGCCAACAATACTTGTG‑‑CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGGT  >  NC_000913/1862972‑1863158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`