Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,863,065 G→A A199V (GCC→GTC)  b1781 ← putative aldehyde reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,863,0650GA100.0% 736.4 / NA 202A199V (GCC→GTC) b1781putative aldehyde reductase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (115/87);  total (115/87)

Only 100 of 206 total aligned reads displayed.

GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA  >  NC_000913/1862975‑1863154
                                                                                          |                                                                                         
gCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGAcc                                                                                         >  1:52049/1‑93 (MQ=255)
gCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGAcc                                                                                         <  2:3220993/93‑1 (MQ=255)
gCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGAcc                                                                                         >  2:4793188/1‑93 (MQ=255)
gCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGAcc                                                                                         >  1:2345029/1‑93 (MQ=255)
 ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCt                                                                                        <  2:5336592/93‑1 (MQ=255)
  caacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTg                                                                                       <  2:2675029/93‑1 (MQ=255)
  caacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTg                                                                                       <  1:2703293/93‑1 (MQ=255)
  caacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTg                                                                                       <  2:5819518/93‑1 (MQ=255)
   aacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTgg                                                                                      <  2:3270802/93‑1 (MQ=255)
   aacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTgg                                                                                      >  1:5326779/1‑93 (MQ=255)
   aacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTgg                                                                                      >  2:621272/1‑93 (MQ=255)
    acaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTggg                                                                                     >  1:2779296/1‑93 (MQ=255)
     caaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGc                                                                                    <  1:2240332/93‑1 (MQ=255)
      aaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCt                                                                                   >  2:3383584/1‑93 (MQ=255)
         aCTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAc                                                                                >  1:3051056/1‑93 (MQ=255)
          cTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACg                                                                               >  1:1338047/1‑93 (MQ=255)
          cTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACg                                                                               >  1:3316909/1‑93 (MQ=255)
            tgtgCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGa                                                                             <  1:4026875/93‑1 (MQ=255)
            tgtgCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGa                                                                             <  2:6256491/93‑1 (MQ=255)
              tgCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACt                                                                           <  1:2667091/93‑1 (MQ=255)
              tgCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACt                                                                           <  2:1102183/93‑1 (MQ=255)
               gCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTg                                                                          >  1:545691/1‑93 (MQ=255)
               gCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTg                                                                          >  1:1537678/1‑93 (MQ=255)
                 cgcgCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTa                                                                        <  1:1382661/93‑1 (MQ=255)
                  gcgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTaa                                                                       >  1:5088053/1‑93 (MQ=255)
                  gcgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTaa                                                                       >  2:3441859/1‑93 (MQ=255)
                   cgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAg                                                                      >  1:2247897/1‑93 (MQ=255)
                    gcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGc                                                                     >  2:1753603/1‑93 (MQ=255)
                      tGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCa                                                                   >  1:3815644/1‑93 (MQ=255)
                      tGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCa                                                                   >  1:651182/1‑93 (MQ=255)
                       gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt                                                                  >  2:5392339/1‑93 (MQ=255)
                       gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt                                                                  >  2:5504377/1‑93 (MQ=255)
                       gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt                                                                  <  1:909789/93‑1 (MQ=255)
                       gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt                                                                  >  2:5624289/1‑93 (MQ=255)
                       gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt                                                                  >  2:2140851/1‑93 (MQ=255)
                        atatTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATc                                                                 <  1:3522658/93‑1 (MQ=255)
                           ttGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAcc                                                              >  2:1578532/1‑93 (MQ=255)
                           ttGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAcc                                                              >  2:87634/1‑93 (MQ=255)
                            tgtgAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCg                                                             <  1:1898564/93‑1 (MQ=255)
                             gtgAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCgg                                                            >  1:68383/1‑93 (MQ=255)
                             gtgAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCgg                                                            <  2:4816521/93‑1 (MQ=255)
                               gAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCa                                                          <  2:2551412/93‑1 (MQ=255)
                                   aTGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctg                                                      >  2:4163851/1‑93 (MQ=255)
                                   aTGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctg                                                      >  2:5935639/1‑93 (MQ=255)
                                    tgtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgc                                                     >  2:2325749/1‑93 (MQ=255)
                                          aTTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGc                                               >  2:887977/1‑93 (MQ=255)
                                           tttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCt                                              >  2:2306506/1‑93 (MQ=255)
                                             tCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTgg                                            <  1:4213023/93‑1 (MQ=255)
                                              cGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGc                                           >  2:4378762/1‑93 (MQ=255)
                                                ttGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAc                                         <  1:383039/93‑1 (MQ=255)
                                                ttGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAc                                         >  2:4533423/1‑93 (MQ=255)
                                                ttGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAc                                         >  2:761039/1‑93 (MQ=255)
                                                  gACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCa                                       <  1:4175902/93‑1 (MQ=255)
                                                   aCTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAg                                      <  1:4470041/93‑1 (MQ=255)
                                                   aCTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAg                                      <  1:5932609/93‑1 (MQ=255)
                                                    cTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgg                                     <  1:5028500/93‑1 (MQ=255)
                                                    cTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgg                                     <  2:3409570/93‑1 (MQ=255)
                                                    cTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgg                                     <  1:5861952/93‑1 (MQ=255)
                                                     tACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAggg                                    <  2:639776/93‑1 (MQ=255)
                                                     tACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAggg                                    <  1:12163/93‑1 (MQ=255)
                                                      aCCGCGTTTTTTAACAGTCTATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTGGCTGGCACCAgggg                                   <  2:16148/93‑1 (MQ=255)
                                                      aCCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgggg                                   <  2:5382591/93‑1 (MQ=255)
                                                      aCCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgggg                                   >  1:39875/1‑93 (MQ=255)
                                                      aCCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgggg                                   >  2:4584820/1‑93 (MQ=255)
                                                       ccGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGa                                  <  2:1370102/93‑1 (MQ=255)
                                                       ccGCGTTTTTGAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGa                                  <  1:2096874/93‑1 (MQ=255)
                                                        cgcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAg                                 <  1:2018615/93‑1 (MQ=255)
                                                        cgcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAg                                 >  1:3944697/1‑93 (MQ=255)
                                                        cgcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAg                                 <  2:3019657/93‑1 (MQ=255)
                                                          cgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTa                               >  2:3826013/1‑93 (MQ=255)
                                                           gTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAg                              >  2:6028937/1‑93 (MQ=255)
                                                             tttttAACAGTCGATTGCGCAACCGCCCGACCTGGTCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAt                            <  1:5554044/93‑1 (MQ=255)
                                                             tttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAt                            <  1:4321777/93‑1 (MQ=255)
                                                             tttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAt                            >  1:453774/1‑93 (MQ=255)
                                                               tttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCg                          >  1:1769676/1‑93 (MQ=255)
                                                                ttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGt                         >  2:3501176/1‑93 (MQ=255)
                                                                ttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGt                         >  1:3742558/1‑93 (MQ=255)
                                                                   aCAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACt                      >  1:2067758/1‑93 (MQ=255)
                                                                   aCAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACt                      >  2:2787116/1‑93 (MQ=255)
                                                                    cAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTc                     >  2:1300746/1‑93 (MQ=255)
                                                                      gTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCaa                   >  1:5342987/1‑93 (MQ=255)
                                                                       tCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAt                  <  1:300984/93‑1 (MQ=255)
                                                                        ccATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAtt                 >  2:1861183/1‑93 (MQ=255)
                                                                          aTTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTcc               >  1:3356771/1‑93 (MQ=255)
                                                                           ttGCGCAACCGCCCGACCTGGGCTAACAGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCt              >  1:1046488/1‑93 (MQ=255)
                                                                            tGCGCATCCTCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTc             <  1:2462980/93‑1 (MQ=255)
                                                                            tGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTc             <  2:4017295/93‑1 (MQ=255)
                                                                             gcgcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCg            <  1:3875758/93‑1 (MQ=255)
                                                                              cgcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGt           >  1:5678193/1‑93 (MQ=255)
                                                                               gcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTg          >  2:3681189/1‑93 (MQ=255)
                                                                                cacccgcccgcCTTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTCCTCAATTCCTCGTGa         <  2:3064948/90‑1 (MQ=255)
                                                                                cAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGa         >  1:4516113/1‑93 (MQ=255)
                                                                                cAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGa         >  1:4826760/1‑93 (MQ=255)
                                                                                 aaCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGaa        >  1:990018/1‑93 (MQ=255)
                                                                                  aCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTCCTCAATTCCTCGTGAAc       <  1:3207654/93‑1 (MQ=255)
                                                                                     gCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCga    >  1:4457599/1‑93 (MQ=255)
                                                                                       ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga  <  1:3339521/93‑1 (MQ=255)
                                                                                       ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga  >  2:2919280/1‑93 (MQ=255)
                                                                                       ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga  <  2:1272343/93‑1 (MQ=255)
                                                                                       ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga  <  1:4937062/93‑1 (MQ=255)
                                                                                          |                                                                                         
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA  >  NC_000913/1862975‑1863154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG  >  NC_000913/1862974‑1863157
                                                                                           |                                                                                            
CGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACC                                                                                            >  SRR4302533.2359541/1‑94 (MQ=60)
CGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACC                                                                                            >  SRR4302533.52400/1‑94 (MQ=60)
 GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT                                                                                           <  SRR4302533.930780/94‑1 (MQ=60)
  CCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTG                                                                                          <  SRR4302533.1375760/94‑1 (MQ=60)
  CCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTATTTAACAGTCCATTGCGCAACCGCCCGACCTG                                                                                          >  SRR4302533.320809/1‑94 (MQ=60)
   CAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGG                                                                                         >  SRR4302533.5358701/1‑94 (MQ=60)
   CAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGG                                                                                         <  SRR4302533.2719873/94‑1 (MQ=60)
    AACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGG                                                                                        >  SRR4302533.2796370/1‑94 (MQ=60)
      CAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCT                                                                                      <  SRR4302533.2254177/94‑1 (MQ=60)
      CAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCT                                                                                      <  SRR4302533.3864019/94‑1 (MQ=60)
         TACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAC                                                                                   >  SRR4302533.3069737/1‑94 (MQ=60)
         TACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAC                                                                                   <  SRR4302533.131719/94‑1 (MQ=60)
          ACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG                                                                                  >  SRR4302533.3337393/1‑94 (MQ=60)
          ACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG                                                                                  >  SRR4302533.1346099/1‑94 (MQ=60)
          ACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG                                                                                  <  SRR4302533.2051043/94‑1 (MQ=60)
           CTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGG                                                                                 >  SRR4302533.4535506/1‑94 (MQ=60)
            TTGTGCCGCGCTGATATTGTGAGCATGTTCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGA                                                                                <  SRR4302533.3057156/94‑1 (MQ=60)
            TTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGA                                                                                >  SRR4302533.391200/1‑94 (MQ=60)
             TGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGAC                                                                               <  SRR4302533.4051388/94‑1 (MQ=60)
               TGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTG                                                                             <  SRR4302533.2683456/94‑1 (MQ=60)
               TGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTG                                                                             >  SRR4302533.548937/1‑94 (MQ=60)
               TGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTG                                                                             >  SRR4302533.1546916/1‑94 (MQ=60)
                GCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGT                                                                            <  SRR4302533.4562417/94‑1 (MQ=60)
                  CGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAA                                                                          <  SRR4302533.1390985/94‑1 (MQ=60)
                  CGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAA                                                                          >  SRR4302533.5118797/1‑94 (MQ=60)
                   GCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAG                                                                         >  SRR4302533.2261790/1‑94 (MQ=60)
                    CGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGC                                                                        >  SRR4302533.3322749/1‑94 (MQ=60)
                     GCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCC                                                                       <  SRR4302533.2082884/94‑1 (MQ=60)
                      CTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCA                                                                      >  SRR4302533.3838975/1‑94 (MQ=60)
                      CTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCA                                                                      >  SRR4302533.655031/1‑94 (MQ=60)
                      CTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCA                                                                      >  SRR4302533.4865779/1‑94 (MQ=60)
                       TGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAT                                                                     >  SRR4302533.5502842/1‑94 (MQ=60)
                        GATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATC                                                                    <  SRR4302533.4643835/94‑1 (MQ=60)
                        GATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATC                                                                    <  SRR4302533.915124/94‑1 (MQ=60)
                        GATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATC                                                                    <  SRR4302533.5828698/94‑1 (MQ=60)
                         ATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCA                                                                   <  SRR4302533.3544371/94‑1 (MQ=60)
                         ATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCA                                                                   >  SRR4302533.2396134/1‑94 (MQ=60)
                            TTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCG                                                                <  SRR4302533.3841134/94‑1 (MQ=60)
                             TGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGG                                                               <  SRR4302533.1910155/94‑1 (MQ=60)
                             TGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGG                                                               >  SRR4302533.68830/1‑94 (MQ=60)
                               TGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCA                                                             >  SRR4302533.4298044/1‑94 (MQ=60)
                                  GCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCT                                                          >  SRR4302533.4492610/1‑94 (MQ=60)
                                        GCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTT                                                    <  SRR4302533.2702966/94‑1 (MQ=60)
                                           ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT                                                 >  SRR4302533.4205928/1‑94 (MQ=60)
                                           ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT                                                 <  SRR4302533.2844273/94‑1 (MQ=60)
                                           ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT                                                 <  SRR4302533.5947299/94‑1 (MQ=60)
                                            TTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTG                                                <  SRR4302533.3344313/94‑1 (MQ=60)
                                            TTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTG                                                >  SRR4302533.5671635/1‑94 (MQ=60)
                                             TTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGG                                               <  SRR4302533.667927/94‑1 (MQ=60)
                                              TCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGC                                              <  SRR4302533.4238508/94‑1 (MQ=60)
                                              TCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGC                                              >  SRR4302533.4449620/1‑94 (MQ=60)
                                              TCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGC                                              <  SRR4302533.2266630/94‑1 (MQ=60)
                                                 TTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACC                                           <  SRR4302533.385352/94‑1 (MQ=60)
                                                   GACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAG                                         <  SRR4302533.4201204/94‑1 (MQ=60)
                                                   GACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAG                                         <  SRR4302533.5403938/94‑1 (MQ=60)
                                                   GACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAG                                         <  SRR4302533.364382/94‑1 (MQ=60)
                                                    ACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGG                                        <  SRR4302533.4497076/94‑1 (MQ=60)
                                                    ACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGG                                        <  SRR4302533.801442/94‑1 (MQ=60)
                                                    ACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGG                                        <  SRR4302533.5968473/94‑1 (MQ=60)
                                                     CTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGG                                       >  SRR4302533.2260865/1‑94 (MQ=60)
                                                     CTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGG                                       <  SRR4302533.5897395/94‑1 (MQ=60)
                                                     CTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGG                                       <  SRR4302533.1895466/94‑1 (MQ=60)
                                                     CTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGG                                       <  SRR4302533.5058948/94‑1 (MQ=60)
                                                      TACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGG                                      >  SRR4302533.40141/1‑94 (MQ=60)
                                                      TACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGG                                      <  SRR4302533.12257/94‑1 (MQ=60)
                                                       ACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGA                                     <  SRR4302533.2171653/94‑1 (MQ=60)
                                                       ACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGA                                     <  SRR4302533.3772827/94‑1 (MQ=60)
                                                        CCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAG                                    >  SRR4302533.3968759/1‑94 (MQ=60)
                                                        CCGCGTTTTTGAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAG                                    <  SRR4302533.2109783/94‑1 (MQ=60)
                                                         CGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGT                                   <  SRR4302533.2031051/94‑1 (MQ=60)
                                                           CGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAG                                 >  SRR4302533.6269492/1‑94 (MQ=60)
                                                           CGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAG                                 <  SRR4302533.2959824/94‑1 (MQ=60)
                                                           CGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAG                                 >  SRR4302533.2776259/1‑94 (MQ=60)
                                                             TTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAT                               >  SRR4302533.456488/1‑94 (MQ=60)
                                                              TTTTTAACAGTCGATTGCGCAACCGCCCGACCTGGTCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATC                              <  SRR4302533.5587585/94‑1 (MQ=60)
                                                              TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATC                              >  SRR4302533.11668/1‑94 (MQ=60)
                                                              TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATC                              <  SRR4302533.4347807/94‑1 (MQ=60)
                                                               TTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCG                             >  SRR4302533.1780451/1‑94 (MQ=60)
                                                                TTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGT                            >  SRR4302533.3765513/1‑94 (MQ=60)
                                                                   AACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACT                         >  SRR4302533.2080496/1‑94 (MQ=60)
                                                                   AACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATAACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACT                         <  SRR4302533.3404473/94‑1 (MQ=60)
                                                                    ACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTC                        >  SRR4302533.6278051/1‑94 (MQ=60)
                                                                      AGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAA                      >  SRR4302533.5060732/1‑94 (MQ=60)
                                                                      AGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAA                      >  SRR4302533.5375027/1‑94 (MQ=60)
                                                                       GTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAT                     <  SRR4302533.405033/94‑1 (MQ=60)
                                                                        TCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATT                    <  SRR4302533.302825/94‑1 (MQ=60)
                                                                        TCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATT                    <  SRR4302533.5259356/94‑1 (MQ=60)
                                                                         CCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTC                   >  SRR4302533.4461700/1‑94 (MQ=60)
                                                                          CATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCC                  >  SRR4302533.3377512/1‑94 (MQ=60)
                                                                          CATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCC                  <  SRR4302533.1455719/94‑1 (MQ=60)
                                                                           ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTTTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCT                 >  SRR4302533.4010604/1‑94 (MQ=60)
                                                                           ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTACT                 >  SRR4302533.518123/1‑94 (MQ=60)
                                                                           ATTGCGCAACCGCCCGACCTGGGCTAACAGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCT                 >  SRR4302533.1052637/1‑94 (MQ=60)
                                                                            TTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTC                <  SRR4302533.408715/94‑1 (MQ=60)
                                                                             TGCGCATCCTCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCG               <  SRR4302533.2478172/94‑1 (MQ=60)
                                                                              GCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGT              >  SRR4302533.5712487/1‑94 (MQ=60)
                                                                              GCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGT              <  SRR4302533.3899416/94‑1 (MQ=60)
                                                                              GCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGT              <  SRR4302533.5372277/94‑1 (MQ=60)
                                                                                GCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGA            >  SRR4302533.4976960/1‑94 (MQ=60)
                                                                                GCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGA            >  SRR4302533.2027534/1‑94 (MQ=60)
                                                                                GCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGA            >  SRR4302533.4856009/1‑94 (MQ=60)
                                                                                GCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGA            >  SRR4302533.4543458/1‑94 (MQ=60)
                                                                                GCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGA            >  SRR4302533.2583459/1‑94 (MQ=60)
                                                                                 CAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAA           >  SRR4302533.995810/1‑94 (MQ=60)
                                                                                  AACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAC          >  SRR4302533.1744283/1‑94 (MQ=60)
                                                                                   ACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTCCTCAATTCCTCGTGAACC         <  SRR4302533.3227406/94‑1 (MQ=60)
                                                                                   ACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACC         <  SRR4302533.3369155/94‑1 (MQ=60)
                                                                                     CGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGA       >  SRR4302533.4484554/1‑94 (MQ=60)
                                                                                        CCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGAT    <  SRR4302533.3360161/94‑1 (MQ=60)
                                                                                        CCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGAT    >  SRR4302533.80560/1‑94 (MQ=60)
                                                                                        CCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGAT    <  SRR4302533.4966953/94‑1 (MQ=60)
                                                                                         CGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATG   <  SRR4302533.2248997/94‑1 (MQ=60)
                                                                                          GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG  >  SRR4302533.3767955/1‑94 (MQ=60)
                                                                                          GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG  >  SRR4302533.228798/1‑94 (MQ=60)
                                                                                          GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG  <  SRR4302533.5637119/94‑1 (MQ=60)
                                                                                          GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG  >  SRR4302533.5191024/1‑94 (MQ=60)
                                                                                           |                                                                                            
CGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG  >  NC_000913/1862974‑1863157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑