Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,938,811 |
T→C |
G262G (GGA→GGG) |
yebA ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,938,811 | 0 | T | C | 99.2%
| 854.0
/ ‑3.7
| 268 | G262G (GGA→GGG) | yebA | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (127/139); total (128/140) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.74e-01 |
Only 100 of 280 total aligned reads displayed.
TGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACG > NC_000913/1938721‑1938900
|
tggtgCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAAccc < 2:9757367/93‑1 (MQ=255)
ggtgCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCt < 1:3118723/93‑1 (MQ=255)
gtgCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCtt < 1:930500/93‑1 (MQ=255)
tgCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCttt < 1:2946185/93‑1 (MQ=255)
tgCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGATTCGCCGTCGGGAATCGAAAAAACCCttt > 1:5639136/1‑93 (MQ=255)
tcAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTc < 1:8102892/92‑1 (MQ=255)
gCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTc < 2:4953842/93‑1 (MQ=255)
cAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCg > 2:774483/1‑93 (MQ=255)
cgcgACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCa < 2:3961878/93‑1 (MQ=255)
cgcgACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCa < 1:9407849/93‑1 (MQ=255)
gcgACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAg > 2:6019157/1‑93 (MQ=255)
gcgACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAg < 1:7215083/93‑1 (MQ=255)
gACCAGTCACAGGATTAGTACGACGCGGGATAAAATTAGAAGAGATACGGACCTGTTTCGCCGTCGGGAATCGCAAGAGCCATATCGCCAGAc < 2:8926710/93‑1 (MQ=255)
ccGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCa < 1:9208783/93‑1 (MQ=255)
cGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGCCCAg > 1:7683350/1‑93 (MQ=255)
ggTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGt < 2:4689346/93‑1 (MQ=255)
ggTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGt > 2:3743128/1‑93 (MQ=255)
ggTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGt > 2:5006726/1‑93 (MQ=255)
cgTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGt < 1:8422093/92‑1 (MQ=255)
gTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTa < 1:9653759/93‑1 (MQ=255)
gTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTa < 1:9868768/93‑1 (MQ=255)
gTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTa < 1:2423208/93‑1 (MQ=255)
tCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTAc > 1:784171/1‑93 (MQ=255)
tCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTAc > 1:8742530/1‑93 (MQ=255)
tCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCAGTCGGGAATCGCAAGAACCCTTTTGCCAGAACAGTAc > 2:5296933/1‑93 (MQ=255)
aCCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCg < 1:6938613/93‑1 (MQ=255)
ccGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGCATCGCAAGAACCCTTTCGCCAGACCAGTACCGt > 1:9689438/1‑93 (MQ=255)
gATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGttcc > 1:8013215/1‑91 (MQ=255)
aTTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACg > 1:6005011/1‑93 (MQ=255)
ttAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGa < 2:625440/93‑1 (MQ=255)
tAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGAt < 2:1260002/93‑1 (MQ=255)
tAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGAt < 1:4769221/93‑1 (MQ=255)
tAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGAt > 1:3554650/1‑93 (MQ=255)
gTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCg > 2:5375707/1‑93 (MQ=255)
tACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGt > 1:1237443/1‑93 (MQ=255)
acgacgCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTa < 1:6756054/93‑1 (MQ=255)
acgacgCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTa < 1:6184620/93‑1 (MQ=255)
gacgCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGa > 2:2412273/1‑93 (MQ=255)
cgcgGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAAt < 2:4570178/93‑1 (MQ=255)
gcgGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAAtt > 1:8059398/1‑93 (MQ=255)
gcgGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAAtt > 1:4486516/1‑93 (MQ=255)
cgGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAAttt < 1:3160062/93‑1 (MQ=255)
gTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGcc < 2:1382112/93‑1 (MQ=255)
gTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGcc > 1:7006940/1‑93 (MQ=255)
ttAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCa > 2:6103281/1‑93 (MQ=255)
tAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCAt > 1:3761665/1‑93 (MQ=255)
aaaaTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATc < 1:4003157/93‑1 (MQ=255)
aaaaTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATc < 1:6539814/93‑1 (MQ=255)
aaTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCtt > 1:266250/1‑93 (MQ=255)
aTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGCATTTGCCATCTTc > 1:6762026/1‑93 (MQ=255)
aTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTc > 2:9079925/1‑93 (MQ=255)
aTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTc < 1:1581168/93‑1 (MQ=255)
aTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTc < 2:7890429/93‑1 (MQ=255)
aTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTc < 2:212092/93‑1 (MQ=255)
tAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAg > 2:5161777/1‑93 (MQ=255)
gACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAgcg < 2:5216084/93‑1 (MQ=255)
aCGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAgcgc < 2:6439774/93‑1 (MQ=255)
agaTACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGa > 1:9992625/1‑93 (MQ=255)
agaTACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGa < 2:4414486/93‑1 (MQ=255)
aTACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATa < 1:7487826/93‑1 (MQ=255)
tACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAg > 1:5798245/1‑93 (MQ=255)
aCGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAgg > 1:6026905/1‑92 (MQ=255)
aCGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGc < 1:910782/93‑1 (MQ=255)
cGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCg > 1:9749014/1‑93 (MQ=255)
ggAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGt < 2:9413612/93‑1 (MQ=255)
gAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGta > 1:1991934/1‑93 (MQ=255)
aaCTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaa > 1:1024371/1‑93 (MQ=255)
aaCTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaa > 1:9074165/1‑93 (MQ=255)
aCTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaat > 2:6994739/1‑93 (MQ=255)
cTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaata < 1:5500473/93‑1 (MQ=255)
cTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaata < 1:4201356/93‑1 (MQ=255)
tGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaataa > 1:2384842/1‑93 (MQ=255)
tGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaataa > 2:1836403/1‑93 (MQ=255)
tGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaataa < 2:9307849/93‑1 (MQ=255)
tGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaataa < 2:8713723/93‑1 (MQ=255)
gTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTaataat > 2:2752472/1‑93 (MQ=255)
gTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTaataat < 1:4895600/93‑1 (MQ=255)
tttCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATc < 1:1393157/93‑1 (MQ=255)
gCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTa > 2:7423567/1‑93 (MQ=255)
ccGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTAc > 2:8513999/1‑93 (MQ=255)
cGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTAcc > 2:5748823/1‑93 (MQ=255)
gTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCt < 2:4876997/93‑1 (MQ=255)
gTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCt > 2:4077886/1‑93 (MQ=255)
tCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGCTCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTTCCtt > 1:5983162/1‑93 (MQ=255)
tCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCtt > 2:2957057/1‑93 (MQ=255)
cGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTc > 2:299536/1‑93 (MQ=255)
cGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTc > 1:536783/1‑93 (MQ=255)
cGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTc > 2:7518724/1‑93 (MQ=255)
gggAATCGCAAGAATCCTTTCGCCACACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATACTCTTTTCCTTCt < 2:1488808/93‑1 (MQ=255)
gggAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCt > 2:3318467/1‑93 (MQ=255)
cggAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCt < 1:2861605/92‑1 (MQ=255)
aaTCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGaa < 1:7374319/93‑1 (MQ=255)
aaTCGCAAGAACCCTTTCGCCAGACCAGTACCATTACGATCGTAGAATTTGCCATCTTAAGCGCGGATAGCGTAATAATCTTTACCTTCTTaa > 1:5197718/1‑93 (MQ=255)
tCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACg < 2:3203350/93‑1 (MQ=255)
gCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCa > 2:350155/1‑93 (MQ=255)
cAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCaa < 2:3616090/93‑1 (MQ=255)
aaGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCaaa > 2:426284/1‑93 (MQ=255)
aaGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCaaa < 1:8902430/93‑1 (MQ=255)
aaGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCaaa < 1:4594651/93‑1 (MQ=255)
gAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACg > 2:8453150/1‑93 (MQ=255)
|
TGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACG > NC_000913/1938721‑1938900
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACG > NC_000913/1938718‑1938904
|
GTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAAC < SRR4302540.5399048/94‑1 (MQ=60)
TGTGGTGCAACGCTACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACC < SRR4302540.5258135/94‑1 (MQ=60)
TGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACC > SRR4302540.5719272/1‑94 (MQ=60)
TGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACC < SRR4302540.5258134/94‑1 (MQ=60)
TGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACC < SRR4302540.9719445/94‑1 (MQ=60)
GTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCC > SRR4302540.3610864/1‑94 (MQ=60)
GTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCC > SRR4302540.6956526/1‑94 (MQ=60)
TGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCT > SRR4302540.4561992/1‑94 (MQ=60)
GGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTT < SRR4302540.3152814/94‑1 (MQ=60)
GTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTT < SRR4302540.451172/94‑1 (MQ=60)
GTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTT < SRR4302540.940283/94‑1 (MQ=60)
GTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTT < SRR4302540.6808678/94‑1 (MQ=60)
GTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGATTCGCCGTCGGGAATCGCAAGAACCCTTT > SRR4302540.5701202/1‑94 (MQ=60)
GTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGATTCGCCGTCGGGAATCGAAAAAACCCTTT > SRR4302540.5701203/1‑94 (MQ=60)
TGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTC < SRR4302540.2978591/94‑1 (MQ=60)
GGCAACGCGACCGGTCACCCGATTAGTACGACGCCGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTC < SRR4302540.2978592/94‑1 (MQ=60)
TCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCG < SRR4302540.8196936/94‑1 (MQ=60)
GCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCG < SRR4302540.4554138/94‑1 (MQ=60)
AACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCC < SRR4302540.9413828/94‑1 (MQ=60)
TCGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCA > SRR4302540.6062159/1‑94 (MQ=60)
CGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAG < SRR4302540.9519731/94‑1 (MQ=60)
GCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGA < SRR4302540.7295506/94‑1 (MQ=60)
GACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACC < SRR4302540.5826698/94‑1 (MQ=60)
GACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACC < SRR4302540.5725325/94‑1 (MQ=60)
GACCGGTAACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACC > SRR4302540.6076621/1‑94 (MQ=60)
ACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGGACCCTTTCGCCAGACCA > SRR4302540.9756125/1‑94 (MQ=60)
ACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCC > SRR4302540.3962996/1‑94 (MQ=60)
ACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCA < SRR4302540.891698/94‑1 (MQ=60)
CCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAG < SRR4302540.9319280/94‑1 (MQ=60)
CCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGCCCAG > SRR4302540.7770409/1‑94 (MQ=60)
CCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAG > SRR4302540.2568396/1‑94 (MQ=60)
CCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACCGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAG < SRR4302540.3922811/94‑1 (MQ=60)
CGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGT < SRR4302540.9920577/94‑1 (MQ=60)
CGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTAGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGT > SRR4302540.5864012/1‑94 (MQ=60)
CGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTA < SRR4302540.8519851/94‑1 (MQ=60)
GTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTAC < SRR4302540.9984032/94‑1 (MQ=60)
GTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTAC > SRR4302540.792509/1‑94 (MQ=60)
GTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTAC < SRR4302540.2449316/94‑1 (MQ=60)
GTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTAC < SRR4302540.9767418/94‑1 (MQ=60)
GTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTAC > SRR4302540.8844009/1‑94 (MQ=60)
CACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCG < SRR4302540.7579473/94‑1 (MQ=60)
CACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCG < SRR4302540.168547/94‑1 (MQ=60)
CACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCG > SRR4302540.9497195/1‑94 (MQ=60)
CACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCG < SRR4302540.9363037/94‑1 (MQ=60)
CACCGAATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCG < SRR4302540.7127929/94‑1 (MQ=60)
ACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGCATCGCAAGAACCCTTTCGCCAGACCAGTACCGT > SRR4302540.9803409/1‑94 (MQ=60)
ACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGT < SRR4302540.7015845/94‑1 (MQ=60)
CCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTT < SRR4302540.617989/94‑1 (MQ=60)
CGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTA > SRR4302540.919011/1‑94 (MQ=60)
GGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTCC > SRR4302540.8106420/1‑94 (MQ=60)
GGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTAC < SRR4302540.5451628/94‑1 (MQ=60)
GGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTAC < SRR4302540.9857767/94‑1 (MQ=60)
GGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTAC < SRR4302540.472220/94‑1 (MQ=60)
GGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGCCGGGAATCGAAAGAACCCTTTCACCAGACCAGTACCGTTAG > SRR4302540.7721888/1‑94 (MQ=60)
GATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACG > SRR4302540.6071586/1‑94 (MQ=60)
TTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGAT > SRR4302540.3593488/1‑94 (MQ=60)
TTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGAT < SRR4302540.7441469/94‑1 (MQ=60)
TTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGAT < SRR4302540.5453154/94‑1 (MQ=60)
TAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGCTACGATC > SRR4302540.5067525/1‑94 (MQ=60)
TAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATC < SRR4302540.4820158/94‑1 (MQ=60)
TAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATC > SRR4302540.7021445/1‑94 (MQ=60)
GTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGT > SRR4302540.1250075/1‑94 (MQ=60)
TACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTA > SRR4302540.5097839/1‑94 (MQ=60)
ACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAG < SRR4302540.6830707/94‑1 (MQ=60)
ACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAG < SRR4302540.5627315/94‑1 (MQ=60)
ACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAG < SRR4302540.6253500/94‑1 (MQ=60)
CGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGA > SRR4302540.3533856/1‑94 (MQ=60)
CGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATT > SRR4302540.8152963/1‑94 (MQ=60)
CGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATT > SRR4302540.4535178/1‑94 (MQ=60)
CGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTG < SRR4302540.3194444/94‑1 (MQ=60)
GGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGC > SRR4302540.8532758/1‑94 (MQ=60)
GGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCC > SRR4302540.7084709/1‑94 (MQ=60)
GGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCC < SRR4302540.2845122/94‑1 (MQ=60)
TTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCAT < SRR4302540.9515674/94‑1 (MQ=60)
TTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCAT < SRR4302540.9635364/94‑1 (MQ=60)
TTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCAT > SRR4302540.3802705/1‑94 (MQ=60)
TAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATC < SRR4302540.3192503/94‑1 (MQ=60)
TAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATC > SRR4302540.8147979/1‑94 (MQ=60)
AAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCT < SRR4302540.6612387/94‑1 (MQ=60)
AAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCT > SRR4302540.298257/1‑94 (MQ=60)
AAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCT < SRR4302540.4046246/94‑1 (MQ=60)
AAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCT < SRR4302540.8556209/94‑1 (MQ=60)
AAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTT > SRR4302540.268864/1‑94 (MQ=60)
AAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTT < SRR4302540.9315716/94‑1 (MQ=60)
AAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTT > SRR4302540.1424467/1‑94 (MQ=60)
AATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGCATTTGCCATCTTC > SRR4302540.6836759/1‑94 (MQ=60)
AATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTC > SRR4302540.6836758/1‑94 (MQ=60)
ATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCA < SRR4302540.494536/94‑1 (MQ=60)
ATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCA < SRR4302540.1598445/94‑1 (MQ=60)
TAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGC < SRR4302540.8856550/94‑1 (MQ=60)
AGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCG > SRR4302540.10053312/1‑94 (MQ=60)
GACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGC < SRR4302540.4050733/94‑1 (MQ=60)
GAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGA > SRR4302540.10109081/1‑94 (MQ=60)
AGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGAT < SRR4302540.2080043/94‑1 (MQ=60)
AGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGAT < SRR4302540.9870820/94‑1 (MQ=60)
GATACGGAACTGTGTCGCGGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATA < SRR4302540.6539490/94‑1 (MQ=60)
ATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAG > SRR4302540.8089904/1‑94 (MQ=60)
ATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAG > SRR4302540.5862318/1‑94 (MQ=60)
ATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAG < SRR4302540.7571411/94‑1 (MQ=60)
TACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGG > SRR4302540.6093783/1‑94 (MQ=60)
TACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGC > SRR4302540.6093782/1‑94 (MQ=60)
TACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGC < SRR4302540.3373817/94‑1 (MQ=60)
ACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCG > SRR4302540.9863419/1‑94 (MQ=60)
ACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCG < SRR4302540.920426/94‑1 (MQ=60)
CGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGT < SRR4302540.3705956/94‑1 (MQ=60)
CGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGT < SRR4302540.7234874/94‑1 (MQ=60)
CGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGT > SRR4302540.9268932/1‑94 (MQ=60)
GGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTA > SRR4302540.9801929/1‑94 (MQ=60)
GGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTA < SRR4302540.2613587/94‑1 (MQ=60)
GGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTA > SRR4302540.2013521/1‑94 (MQ=60)
GGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTA > SRR4302540.418341/1‑94 (MQ=60)
GAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAA > SRR4302540.9183142/1‑94 (MQ=60)
GAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAA < SRR4302540.5867652/94‑1 (MQ=60)
GAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAA > SRR4302540.1034763/1‑94 (MQ=60)
AACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAAT < SRR4302540.8130287/94‑1 (MQ=60)
ACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATA > SRR4302540.8184989/1‑94 (MQ=60)
ACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATA < SRR4302540.2903546/94‑1 (MQ=60)
ACTGTGTCGCCCGCGGGGATCGCAAGAACCCTTTCGGCATACCAGTTCCGGTCCGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATA < SRR4302540.2903544/94‑1 (MQ=46)
CTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAA < SRR4302540.5561042/94‑1 (MQ=60)
CTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAA > SRR4302540.2410535/1‑94 (MQ=60)
CTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAA < SRR4302540.4247073/94‑1 (MQ=60)
GTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATC < SRR4302540.4948254/94‑1 (MQ=60)
GTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATC > SRR4302540.7845445/1‑94 (MQ=60)
TTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCT < SRR4302540.1408083/94‑1 (MQ=60)
TTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCT < SRR4302540.1492091/94‑1 (MQ=60)
TTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCT < SRR4302540.1408082/94‑1 (MQ=60)
TCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTT > SRR4302540.9113084/1‑94 (MQ=60)
TCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTT < SRR4302540.4825868/94‑1 (MQ=60)
TCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTT < SRR4302540.1007004/94‑1 (MQ=60)
CGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTA < SRR4302540.4745015/94‑1 (MQ=60)
GCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTAC > SRR4302540.6674678/1‑94 (MQ=60)
GCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTAC > SRR4302540.2067143/1‑94 (MQ=60)
CCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACC > SRR4302540.8270359/1‑94 (MQ=60)
GTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGCTCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTTCCTT > SRR4302540.6049426/1‑94 (MQ=60)
GTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCCGCGCGGTTAGCGAGATAATCTTTcactc > SRR4302540.7851607/1‑89 (MQ=60)
GTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTT < SRR4302540.2411695/94‑1 (MQ=60)
TCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTC < SRR4302540.6192721/94‑1 (MQ=60)
TCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTC < SRR4302540.745722/94‑1 (MQ=60)
TCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTC > SRR4302540.542597/1‑94 (MQ=60)
CGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCT < SRR4302540.7970740/94‑1 (MQ=60)
CGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCT < SRR4302540.7334196/94‑1 (MQ=60)
GGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTG > SRR4302540.526661/1‑94 (MQ=60)
GGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTG < SRR4302540.6904535/94‑1 (MQ=60)
GGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTG > SRR4302540.1237443/1‑94 (MQ=60)
CGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTG < SRR4302540.2892632/94‑1 (MQ=60)
GAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAA < SRR4302540.1261235/94‑1 (MQ=60)
GAATCGCAAGAACCCTTTCGCCAGACCAGTACCATTACGATCGTAGAATTTGCCATCTTAAGCGCGGATAGCGTAATAATCTTTACCTTCTTAA > SRR4302540.5254317/1‑94 (MQ=60)
AATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAAC < SRR4302540.7456512/94‑1 (MQ=60)
ATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATCTGCCATCTTCAGCGCGGATAGCGTAATAATATTTACCTTCTGAACG > SRR4302540.9149365/1‑94 (MQ=60)
TCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGC < SRR4302540.7929193/94‑1 (MQ=60)
TCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGC < SRR4302540.184032/94‑1 (MQ=60)
CGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGGCATCTTGAGCGCGGCTAGCGTAATAATCCTTACCTTCTGAACTCA > SRR4302540.9825120/1‑94 (MQ=60)
CAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAA > SRR4302540.2812479/1‑94 (MQ=60)
AAGAACTCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAAC > SRR4302540.5924240/1‑94 (MQ=60)
AAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAAC < SRR4302540.8460682/94‑1 (MQ=60)
AAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAAC < SRR4302540.4644076/94‑1 (MQ=60)
AAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAAC > SRR4302540.7042316/1‑94 (MQ=60)
AAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAAC < SRR4302540.9005494/94‑1 (MQ=60)
AGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACG < SRR4302540.981831/94‑1 (MQ=60)
GAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGT > SRR4302540.9528528/1‑94 (MQ=60)
GAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGT < SRR4302540.6575784/94‑1 (MQ=60)
GAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGT > SRR4302540.151408/1‑94 (MQ=60)
GAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACACAAACGA > SRR4302540.33582/1‑94 (MQ=60)
AACCCTTTCGCCCGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCCGCGCGGATAGCGTAATCATCTTTACCTTCTGAACGCCAACGTC > SRR4302540.7923474/1‑94 (MQ=60)
ACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTAC < SRR4302540.3892483/94‑1 (MQ=60)
CCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACG < SRR4302540.1991081/94‑1 (MQ=60)
CCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACG < SRR4302540.8670998/94‑1 (MQ=60)
CCCTTTCGCCAGACCAGTACCGTTACGATCGGAGAATTTGCCATCTTCAGCGCGGATATCGTAATAATCTTTACCTTCTGAACGCAAACGTACG < SRR4302540.8670996/94‑1 (MQ=60)
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GTGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACG > NC_000913/1938718‑1938904
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
