Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,973,518	A→T	D254E (GAT→GAA)	motB ←	MotB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,973,518	0	A	T	100.0%	768.3 / NA	215	D254E (GAT→GAA)	motB	MotB
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (86/129); total (86/129)

Only 100 of 242 total aligned reads displayed.

CTGGCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCATCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAG  >  NC_000913/1973427‑1973607

 tGGCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGcttc                                                                                         <  1:1377951/93‑1 (MQ=255)

 tGGCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGGTGGCGGcttc                                                                                         >  2:3913703/1‑93 (MQ=255)

  ggCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGcttca                                                                                        <  2:7195886/93‑1 (MQ=255)

   gCTTATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGGTGATGCGACGGTTGACGGcttcat                                                                                       <  1:8228844/93‑1 (MQ=255)

    cTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGGTGGCGGtttcatt                                                                                      >  2:9333794/1‑92 (MQ=255)

     tCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTtcatca                                                                                     <  1:8384021/93‑1 (MQ=255)

       aTTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTTCGTACCAGCAGGCTGAAGCGACGGGTGACGGCATCATAAgg                                                                                   >  2:9168077/1‑93 (MQ=255)

        ttCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAggc                                                                                  >  1:2568977/1‑92 (MQ=255)

        ttCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGt                                                                                  >  1:6234438/1‑93 (MQ=255)

        ttCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGt                                                                                  >  1:4128742/1‑93 (MQ=255)

         tCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTc                                                                                 <  1:3215431/93‑1 (MQ=255)

          cTGGCTTTCGGCGTTTTCATGCAAAATGGACTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACCGTTGGCGGCTTCATCAGGTcc                                                                                >  2:1476927/1‑93 (MQ=255)

            ggCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCcgc                                                                              <  2:225939/93‑1 (MQ=255)

               tttCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGAt                                                                           <  2:3742501/93‑1 (MQ=255)

                ttCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATc                                                                          <  2:5245827/93‑1 (MQ=255)

                 tCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGATGGCTTCATCAGGTCCGCGATCg                                                                         <  1:2373270/93‑1 (MQ=255)

                   ggCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCt                                                                       <  2:2844273/93‑1 (MQ=255)

                     ggTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTa                                                                     <  2:8269180/92‑1 (MQ=255)

                     cGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTGCCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTa                                                                     <  1:2700929/93‑1 (MQ=255)

                     cGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTa                                                                     <  2:9896141/93‑1 (MQ=255)

                      gTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTaa                                                                    <  2:161446/93‑1 (MQ=255)

                       ttttCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAg                                                                   >  2:6306211/1‑93 (MQ=255)

                       ttttCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAg                                                                   >  2:10015566/1‑93 (MQ=255)

                       ttttCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAg                                                                   <  1:181884/93‑1 (MQ=255)

                         ttCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCCGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCCCGATCGCTTAAgcc                                                                 >  1:8007673/1‑92 (MQ=255)

                         ttCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAgcg                                                                 <  2:8998470/93‑1 (MQ=255)

                          tCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAgcgc                                                                <  1:7815001/93‑1 (MQ=255)

                            aTGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCAt                                                              <  2:6628647/93‑1 (MQ=255)

                             tGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATc                                                             <  2:5912693/93‑1 (MQ=255)

                             tGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATc                                                             <  1:6804519/93‑1 (MQ=255)

                             tGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATc                                                             <  1:6453693/93‑1 (MQ=255)

                              gCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCg                                                            <  1:128878/93‑1 (MQ=255)

                               cAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGt                                                           <  1:54564/93‑1 (MQ=255)

                               cAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGt                                                           <  1:2972084/93‑1 (MQ=255)

                                aaaaTGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGtt                                                          >  2:7981259/1‑93 (MQ=255)

                                aaaaTGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGtt                                                          >  2:4973092/1‑93 (MQ=255)

                                aaaaTGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGtt                                                          >  1:9075098/1‑93 (MQ=255)

                                 aaaTGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGATGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTg                                                         >  1:6011820/1‑93 (MQ=255)

                                  aaTGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTTATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTgc                                                        <  1:2950622/93‑1 (MQ=255)

                                  aaTGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTgc                                                        >  1:3965108/1‑93 (MQ=255)

                                        cTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCAt                                                  >  2:2344667/1‑93 (MQ=255)

                                        cTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCAt                                                  <  2:746501/93‑1 (MQ=255)

                                        cTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCAt                                                  <  1:4796884/93‑1 (MQ=255)

                                         tGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATg                                                 >  2:1696473/1‑93 (MQ=255)

                                         tGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATg                                                 >  2:8804047/1‑93 (MQ=255)

                                         tGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGCTGCCGCCATg                                                 >  2:4363017/1‑93 (MQ=255)

                                          gTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGc                                                <  1:865655/93‑1 (MQ=255)

                                          gTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGc                                                >  1:7195433/1‑93 (MQ=255)

                                          gTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGc                                                <  1:9494868/93‑1 (MQ=255)

                                            tCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCcg                                              >  1:289350/1‑93 (MQ=255)

                                            tCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCcg                                              >  1:7605920/1‑93 (MQ=255)

                                             cGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCcga                                             <  2:8465795/93‑1 (MQ=255)

                                             cGGCTTGGTTGTTCAGTGCCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCcga                                             <  1:1103875/93‑1 (MQ=255)

                                              ggCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTTCCGCCATGCcgac                                            >  2:5546782/1‑93 (MQ=255)

                                               gCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCcgacg                                           <  2:200120/93‑1 (MQ=255)

                                                 ttgtttgtTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCgacgac                                         <  2:5408538/93‑1 (MQ=255)

                                                 ttgtttgtTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCgacgac                                         <  1:4605988/93‑1 (MQ=255)

                                                   ttttgttCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGacac                                       <  2:3335197/92‑1 (MQ=255)

                                                   gtttgttCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGacac                                       <  2:9868662/93‑1 (MQ=255)

                                                     ttgttCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGt                                     >  1:4500951/1‑93 (MQ=255)

                                                     ttgttCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGt                                     >  2:2698268/1‑93 (MQ=255)

                                                       gttCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTaa                                   <  2:9425038/93‑1 (MQ=255)

                                                         tCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAaca                                 <  1:2266514/93‑1 (MQ=255)

                                                            gTACCAGCAGGCTGAGTCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACtt                              <  1:4674427/93‑1 (MQ=255)

                                                             tACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACttt                             <  1:9712287/93‑1 (MQ=255)

                                                             tACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACttt                             <  1:2679267/93‑1 (MQ=255)

                                                             tACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACttt                             <  2:6443564/93‑1 (MQ=255)

                                                                 agcagGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCg                         <  2:2581409/93‑1 (MQ=255)

                                                                  gcagGGTGATGCGACGGTGGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCACCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGc                        <  2:1953697/93‑1 (MQ=255)

                                                                  gcagGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGc                        <  2:4052119/93‑1 (MQ=255)

                                                                  gcagGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGc                        >  2:6064998/1‑93 (MQ=255)

                                                                    agGCTGATGCGACGGTTGACGGCTTTATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTa                      >  1:5936823/1‑93 (MQ=255)

                                                                      gCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATc                    <  1:6989274/93‑1 (MQ=255)

                                                                      gCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATc                    <  2:4105224/93‑1 (MQ=255)

                                                                       cTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATcc                   <  1:3037441/93‑1 (MQ=255)

                                                                       cTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATcc                   >  1:8157400/1‑93 (MQ=255)

                                                                        tGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCa                  >  2:8575495/1‑93 (MQ=255)

                                                                         gATGCGAGCGTCGTCGGCTTCAGCACGTACGCGAGCGCTGAACCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCaa                 <  2:4153299/93‑1 (MQ=255)

                                                                         gATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCaa                 <  2:1122624/93‑1 (MQ=255)

                                                                         gATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCaa                 >  1:8692937/1‑93 (MQ=255)

                                                                         gATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTT‑AGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAAc                >  1:5041146/1‑93 (MQ=255)

                                                                          aTGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAAc                >  1:5588901/1‑93 (MQ=255)

                                                                           tGCGACGGTTGCCGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAAcc               <  1:4377156/93‑1 (MQ=255)

                                                                           tGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCGGACGCCACCTAACACTTTGCCGCTATCTAAcc               >  1:7647692/1‑93 (MQ=255)

                                                                           tGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAAcc               <  2:7143085/93‑1 (MQ=255)

                                                                           tGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAAcc               <  1:4879115/93‑1 (MQ=255)

                                                                             cGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTACGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCt             <  1:167824/93‑1 (MQ=255)

                                                                               aCGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTcc           >  1:7427564/1‑93 (MQ=255)

                                                                               aCGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTcc           <  1:9337311/93‑1 (MQ=255)

                                                                               aCGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTcc           >  1:2213293/1‑93 (MQ=255)

                                                                                  gTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGAc        <  1:3388542/93‑1 (MQ=255)

                                                                                  gTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGAc        >  2:8274121/1‑93 (MQ=255)

                                                                                   ttGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGAcc       >  2:3828267/1‑93 (MQ=255)

                                                                                   ttGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGAcc       >  2:3218137/1‑93 (MQ=255)

                                                                                     gACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCAt     >  1:2107686/1‑93 (MQ=255)

                                                                                      aCGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATc    <  1:3068887/93‑1 (MQ=255)

                                                                                       cGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCa   <  2:464915/93‑1 (MQ=255)

                                                                                       cGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCa   <  1:5661546/93‑1 (MQ=255)

                                                                                        ggCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAg  <  2:7420846/93‑1 (MQ=255)

                                                                                        ggCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAg  >  1:9431380/1‑93 (MQ=255)

CTGGCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCATCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAG  >  NC_000913/1973427‑1973607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TACTGGCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCATCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAGTTCG  >  NC_000913/1973425‑1973611

TACTGGCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCT                                                                                               >  SRR4302540.469875/1‑94 (MQ=60)

 ACTGGCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTT                                                                                              >  SRR4302540.292230/1‑94 (MQ=60)

 ACTGGCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTT                                                                                              >  SRR4302540.6542395/1‑94 (MQ=60)

  CTGGCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTC                                                                                             <  SRR4302540.6956536/94‑1 (MQ=60)

  CTGGCTCATTCTGGCTTGCGGCGTTTACATGCAAAATGGCTTGTTCGGCTTGTTTGTTGAGTACCAGCAGGCTGATGCGACGGTTGACGGCATC                                                                                             <  SRR4302540.8306223/94‑1 (MQ=60)

   TGGCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCA                                                                                            <  SRR4302540.1392619/94‑1 (MQ=60)

    GTCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCAT                                                                                           <  SRR4302540.293024/94‑1 (MQ=60)

     GCTTATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGGTGATGCGACGGTTGACGGCTTCATC                                                                                          <  SRR4302540.8324496/94‑1 (MQ=60)

     GCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATC                                                                                          <  SRR4302540.8324497/94‑1 (MQ=60)

      CTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCA                                                                                         <  SRR4302540.3346499/94‑1 (MQ=60)

      CTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCA                                                                                         <  SRR4302540.6020600/94‑1 (MQ=60)

       TCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAG                                                                                        <  SRR4302540.7018000/94‑1 (MQ=60)

       TCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAG                                                                                        <  SRR4302540.2716783/94‑1 (MQ=60)

       TCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAG                                                                                        >  SRR4302540.4720677/1‑94 (MQ=60)

       TCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAG                                                                                        <  SRR4302540.8481294/94‑1 (MQ=60)

         ATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGT                                                                                      >  SRR4302540.4173367/1‑94 (MQ=60)

         ATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGT                                                                                      >  SRR4302540.4369749/1‑94 (MQ=60)

         ATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGT                                                                                      >  SRR4302540.6303777/1‑94 (MQ=60)

         ATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGT                                                                                      <  SRR4302540.991574/94‑1 (MQ=60)

         ATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGC                                                                                      >  SRR4302540.2596677/1‑94 (MQ=60)

           TCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCC                                                                                    <  SRR4302540.3250345/94‑1 (MQ=60)

           TCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCC                                                                                    >  SRR4302540.2643969/1‑94 (MQ=60)

            CTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCG                                                                                   <  SRR4302540.1436136/94‑1 (MQ=60)

            CTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCG                                                                                   <  SRR4302540.2857104/94‑1 (MQ=60)

                 TTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATC                                                                              <  SRR4302540.9553003/94‑1 (MQ=60)

                 TTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATC                                                                              >  SRR4302540.9127841/1‑94 (MQ=60)

                  TTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCG                                                                             >  SRR4302540.704827/1‑94 (MQ=60)

                  TTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGGTGACGGCTTCCTCAGGTCCGCGATCG                                                                             >  SRR4302540.563378/1‑94 (MQ=60)

                   TCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGATGGCTTCATCAGGTCCGCGATCGC                                                                            <  SRR4302540.2398842/94‑1 (MQ=60)

                   TCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGC                                                                            >  SRR4302540.2470386/1‑94 (MQ=60)

                      GCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTA                                                                         <  SRR4302540.8731353/94‑1 (MQ=60)

                      GCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTA                                                                         >  SRR4302540.8757837/1‑94 (MQ=60)

                       CGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTGCCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAA                                                                        <  SRR4302540.2730075/94‑1 (MQ=60)

                        GTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAG                                                                       >  SRR4302540.2236725/1‑94 (MQ=60)

                        GTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAG                                                                       >  SRR4302540.2323028/1‑94 (MQ=60)

                        GTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGGCCGCGATCGCTTAAG                                                                       >  SRR4302540.2327151/1‑94 (MQ=60)

                         TTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGC                                                                      <  SRR4302540.183698/94‑1 (MQ=60)

                         TTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGC                                                                      >  SRR4302540.2284901/1‑94 (MQ=60)

                          TTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCCGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCCCGATCGCTTAAGCC                                                                     >  SRR4302540.8100848/1‑94 (MQ=60)

                          TTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCG                                                                     >  SRR4302540.7859745/1‑94 (MQ=60)

                           TTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGC                                                                    <  SRR4302540.4892874/94‑1 (MQ=60)

                            TCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCA                                                                   <  SRR4302540.7906330/94‑1 (MQ=60)

                              ATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATC                                                                 <  SRR4302540.9978765/94‑1 (MQ=60)

                               TGCAAAATGTGCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCGGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCG                                                                <  SRR4302540.6525531/94‑1 (MQ=60)

                               TGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTNCGCGATCGCTTAAGCGCATCG                                                                >  SRR4302540.8050845/1‑94 (MQ=60)

                               TGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCG                                                                <  SRR4302540.6525532/94‑1 (MQ=60)

                               TGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCA                                                                <  SRR4302540.6879811/94‑1 (MQ=60)

                                GCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGT                                                               <  SRR4302540.130237/94‑1 (MQ=60)

                                 CAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTT                                                              <  SRR4302540.3004917/94‑1 (MQ=60)

                                 CAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTT                                                              <  SRR4302540.5526441/94‑1 (MQ=60)

                                 CAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTT                                                              <  SRR4302540.55110/94‑1 (MQ=60)

                                 CAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTT                                                              >  SRR4302540.9184085/1‑94 (MQ=60)

                                  AAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTG                                                             <  SRR4302540.1189508/94‑1 (MQ=60)

                                  AAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTG                                                             <  SRR4302540.7077447/94‑1 (MQ=60)

                                  AAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGATGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTG                                                             >  SRR4302540.6078488/1‑94 (MQ=60)

                                   AAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGC                                                            >  SRR4302540.4007859/1‑94 (MQ=60)

                                    AATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTTATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCC                                                           <  SRR4302540.2983100/94‑1 (MQ=60)

                                         CCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCAT                                                      >  SRR4302540.7443857/1‑94 (MQ=60)

                                          CTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATG                                                     <  SRR4302540.2657724/94‑1 (MQ=60)

                                          CTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATG                                                     <  SRR4302540.4848218/94‑1 (MQ=60)

                                          CTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATG                                                     >  SRR4302540.4809143/1‑94 (MQ=60)

                                           TGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGC                                                    >  SRR4302540.7275637/1‑94 (MQ=60)

                                            GTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCC                                                   <  SRR4302540.9607401/94‑1 (MQ=60)

                                            GTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCC                                                   >  SRR4302540.371405/1‑94 (MQ=60)

                                            GTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCC                                                   <  SRR4302540.874846/94‑1 (MQ=60)

                                            GTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCC                                                   >  SRR4302540.9151879/1‑94 (MQ=60)

                                             TTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCG                                                  >  SRR4302540.7691388/1‑94 (MQ=60)

                                             TTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCG                                                  >  SRR4302540.7691390/1‑94 (MQ=60)

                                             TTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCG                                                  >  SRR4302540.292209/1‑94 (MQ=60)

                                               CGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGAC                                                <  SRR4302540.1809390/94‑1 (MQ=60)

                                               CGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGAC                                                <  SRR4302540.1331893/94‑1 (MQ=60)

                                               CGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGAC                                                <  SRR4302540.4525434/94‑1 (MQ=60)

                                               CGGCTTGGTTGTTCAGTGCCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGAC                                                <  SRR4302540.1115253/94‑1 (MQ=60)

                                                GGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACG                                               >  SRR4302540.9631166/1‑94 (MQ=60)

                                                 GCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGA                                              <  SRR4302540.4673129/94‑1 (MQ=60)

                                                   TTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACA                                            <  SRR4302540.4655458/94‑1 (MQ=60)

                                                   TTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACA                                            <  SRR4302540.3147704/94‑1 (MQ=60)

                                                    TGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACAC                                           <  SRR4302540.5930573/94‑1 (MQ=60)

                                                      TTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGT                                         >  SRR4302540.4549742/1‑94 (MQ=60)

                                                      TTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGA                                         >  SRR4302540.1637210/1‑94 (MQ=60)

                                                      TTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATAGTTGCCGCCATGCCGACGACACGT                                         <  SRR4302540.5036035/94‑1 (MQ=60)

                                                        TGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAA                                       <  SRR4302540.4455670/94‑1 (MQ=60)

                                                         GTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAAC                                      <  SRR4302540.6281998/94‑1 (MQ=60)

                                                          TTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACA                                     >  SRR4302540.4578068/1‑94 (MQ=60)

                                                           TCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACAC                                    <  SRR4302540.2290833/94‑1 (MQ=60)

                                                           TCAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACAC                                    <  SRR4302540.3185195/94‑1 (MQ=60)

                                                            CAGTACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACT                                   <  SRR4302540.2777394/94‑1 (MQ=60)

                                                              GTACCAGCCGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTT                                 <  SRR4302540.7538804/94‑1 (MQ=60)

                                                              GTACCAGCAGGCTGAGTCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTT                                 <  SRR4302540.4724449/94‑1 (MQ=60)

                                                               TACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTG                                <  SRR4302540.9826428/94‑1 (MQ=60)

                                                               TACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTG                                <  SRR4302540.2708253/94‑1 (MQ=60)

                                                               TACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTG                                <  SRR4302540.3042286/94‑1 (MQ=60)

                                                               TACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTG                                >  SRR4302540.8206480/1‑94 (MQ=60)

                                                                ACCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGC                               >  SRR4302540.817614/1‑94 (MQ=60)

                                                                 CCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCC                              >  SRR4302540.2984988/1‑94 (MQ=60)

                                                                 CCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCC                              <  SRR4302540.4149764/94‑1 (MQ=60)

                                                                 CCAGCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCC                              >  SRR4302540.7716719/1‑94 (MQ=60)

                                                                    GCAGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCT                           <  SRR4302540.9256736/94‑1 (MQ=60)

                                                                     CAGGCTGATGCGACGGTTGACGGCTTTATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTA                          >  SRR4302540.6002450/1‑94 (MQ=60)

                                                                      AGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTAT                         >  SRR4302540.2066776/1‑94 (MQ=60)

                                                                      AGGCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTAT                         >  SRR4302540.1979539/1‑94 (MQ=60)

                                                                        GCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCC                       <  SRR4302540.9465307/94‑1 (MQ=60)

                                                                        GCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCC                       >  SRR4302540.8252108/1‑94 (MQ=60)

                                                                        GCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCC                       <  SRR4302540.582598/94‑1 (MQ=60)

                                                                        GCTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCC                       <  SRR4302540.7066863/94‑1 (MQ=60)

                                                                         CTGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCA                      <  SRR4302540.3070782/94‑1 (MQ=60)

                                                                          TGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAA                     >  SRR4302540.8793858/1‑94 (MQ=60)

                                                                          TGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAA                     <  SRR4302540.6749247/94‑1 (MQ=60)

                                                                          TGATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTT‑AGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAAC                    >  SRR4302540.5095676/1‑94 (MQ=60)

                                                                           GATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAAC                    >  SRR4302540.5650409/1‑94 (MQ=60)

                                                                           GATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAAC                    >  SRR4302540.3088727/1‑94 (MQ=60)

                                                                            ATGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCGGACGCCACCTAACACTTTGCCGCTATCTAACC                   >  SRR4302540.7733779/1‑94 (MQ=60)

                                                                             TGCGACGGTTGCCGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCC                  <  SRR4302540.4424686/94‑1 (MQ=60)

                                                                             TGCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCC                  <  SRR4302540.4931503/94‑1 (MQ=60)

                                                                              GCGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCT                 <  SRR4302540.8652170/94‑1 (MQ=60)

                                                                               CGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTACGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTC                <  SRR4302540.169508/94‑1 (MQ=60)

                                                                               CGACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTC                >  SRR4302540.5671059/1‑94 (MQ=60)

                                                                                GACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCC               >  SRR4302540.2237185/1‑94 (MQ=60)

                                                                                GACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCC               <  SRR4302540.5362570/94‑1 (MQ=60)

                                                                                GACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCC               >  SRR4302540.7510306/1‑94 (MQ=60)

                                                                                 ACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCG              <  SRR4302540.4078602/94‑1 (MQ=60)

                                                                                 ACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCG              <  SRR4302540.9448607/94‑1 (MQ=60)

                                                                                 ACGGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCG              <  SRR4302540.9448606/94‑1 (MQ=60)

                                                                                   GGTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGAC            >  SRR4302540.5057352/1‑94 (MQ=60)

                                                                                    GTTGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACC           <  SRR4302540.3425515/94‑1 (MQ=60)

                                                                                      TGACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCAT         >  SRR4302540.2130306/1‑94 (MQ=60)

                                                                                        ACGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCA       <  SRR4302540.3102556/94‑1 (MQ=60)

                                                                                         CGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAG      >  SRR4302540.9543412/1‑94 (MQ=60)

                                                                                         CGGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAG      <  SRR4302540.5723887/94‑1 (MQ=60)

                                                                                          GGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAGT     <  SRR4302540.3049160/94‑1 (MQ=60)

                                                                                          GGCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAGT     >  SRR4302540.8058964/1‑94 (MQ=60)

                                                                                           GCTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAGTT    >  SRR4302540.132185/1‑94 (MQ=60)

                                                                                            CTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAGTTC   <  SRR4302540.4235033/94‑1 (MQ=60)

                                                                                            CTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAGTTC   >  SRR4302540.5102161/1‑94 (MQ=60)

                                                                                            CTTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAGTTC   <  SRR4302540.8324711/94‑1 (MQ=60)

                                                                                             TTCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAGTTCG  >  SRR4302540.4661106/1‑94 (MQ=60)

TACTGGCTCATTCTGGCTTTCGGCGTTTTCATGCAAAATGGCCTGTTCGGCTTGTTTGTTCAGTACCAGCAGGCTGATGCGACGGTTGACGGCATCATCAGGTCCGCGATCGCTTAAGCGCATCGTTGCCGCCATGCCGACGACACGTAACACTTTGCCGCTATCCAACCCTCCGACCATCAGTTCG  >  NC_000913/1973425‑1973611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`