Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,973,993	T→C	E96G (GAA→GGA)	motB ←	MotB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,973,993	0	T	C	100.0%	588.1 / NA	182	E96G (GAA→GGA)	motB	MotB
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (95/87); total (95/87)

Only 100 of 198 total aligned reads displayed.

ATCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑TCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGCCAG  >  NC_000913/1973903‑1974084

aTCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑ccc                                                                                           >  1:3746521/1‑93 (MQ=255)

aTCAACTGGTCGAGATCACACCGCAATTTCCGCAATCAACTTTGCTCCATGCGGTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑ccc                                                                                           >  2:5113371/1‑93 (MQ=255)

 tCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑cccc                                                                                          >  1:5044993/1‑93 (MQ=255)

 tCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑cccc                                                                                          >  1:3492795/1‑93 (MQ=255)

   aaCTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑cccccc                                                                                        >  1:886607/1‑93 (MQ=255)

    aCTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCt                                                                                       >  1:7299619/1‑93 (MQ=255)

     cTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTg                                                                                      >  1:2102372/1‑93 (MQ=255)

       ggTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGc                                                                                    >  2:1832335/1‑93 (MQ=255)

       ggTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGc                                                                                    <  2:3161475/93‑1 (MQ=255)

       ggTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGc                                                                                    <  1:3276208/93‑1 (MQ=255)

           gagaTCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTg                                                                                <  2:6553154/93‑1 (MQ=255)

             gaTCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTggg                                                                              <  1:1054940/93‑1 (MQ=255)

               tCACCCCGCAATTTACTCAATCGACTTCGCTTCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCCCT‑TCCCCCTGGCTTTGGctg                                                                            >  1:5696623/1‑93 (MQ=255)

                cgccccGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGgtgt                                                                           <  2:7861379/91‑1 (MQ=255)

                cACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGgtgt                                                                           <  1:7247837/93‑1 (MQ=255)

                cACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGgtgt                                                                           >  2:1571048/1‑93 (MQ=255)

                 aCCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTa                                                                          >  2:7696974/1‑93 (MQ=255)

                 aCCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTa                                                                          >  2:6726928/1‑93 (MQ=255)

                 aCCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTa                                                                          <  1:9062338/93‑1 (MQ=255)

                  ccccGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTaa                                                                         >  2:1136642/1‑93 (MQ=255)

                  ccccGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTaa                                                                         >  2:485183/1‑93 (MQ=255)

                  ccccGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTaa                                                                         >  1:1437038/1‑93 (MQ=255)

                   cccGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAat                                                                        <  1:1859478/93‑1 (MQ=255)

                   cccGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGATGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAat                                                                        >  1:8117474/1‑93 (MQ=255)

                    ccGCAATTTTCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAatc                                                                       >  1:7773062/1‑93 (MQ=255)

                    ccGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAatc                                                                       >  1:7137690/1‑93 (MQ=255)

                     cGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAatca                                                                      <  2:5608779/93‑1 (MQ=255)

                     cGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAatca                                                                      >  1:9846385/1‑93 (MQ=255)

                     cGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAatca                                                                      <  1:2561534/93‑1 (MQ=255)

                      gCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAatcat                                                                     >  1:7942383/1‑93 (MQ=255)

                       cAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAatcatc                                                                    <  2:9143826/93‑1 (MQ=255)

                       cAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCAGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAatcatc                                                                    <  2:9014424/93‑1 (MQ=255)

                         aTTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATcac                                                                  >  2:3971810/1‑93 (MQ=255)

                           ttCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATcacca                                                                <  2:8120575/93‑1 (MQ=255)

                           ttCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATcacca                                                                <  2:3310708/93‑1 (MQ=255)

                            tCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATcaccac                                                               <  1:5217865/93‑1 (MQ=255)

                            tCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATcaccac                                                               <  2:6385949/93‑1 (MQ=255)

                            tCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGGGTAATCATcaccac                                                               <  1:9784330/93‑1 (MQ=255)

                             ccGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCaccacc                                                              >  1:2200234/1‑93 (MQ=255)

                              cGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCAccg                                                             >  1:31570/1‑93 (MQ=255)

                               gCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCAccgc                                                            >  1:8394009/1‑93 (MQ=255)

                               gCAATCGACTTTGCTCCATGCGTCTTTTCAGCTCTTCGATGTTCGGCTGCTTATCCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCAccgc                                                            <  2:5499676/93‑1 (MQ=255)

                                 aaTCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCAccgccg                                                          >  2:4614796/1‑93 (MQ=255)

                                  aTCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCgg                                                         <  1:863560/93‑1 (MQ=255)

                                   tCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCggg                                                        >  1:5152247/1‑93 (MQ=255)

                                      aCTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAAt                                                     <  1:6959185/93‑1 (MQ=255)

                                      aCTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAAt                                                     <  2:7527506/93‑1 (MQ=255)

                                       cTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAAtt                                                    >  2:2662808/1‑93 (MQ=255)

                                        tttGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTg                                                   <  2:2510163/93‑1 (MQ=255)

                                         ttGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTgg                                                  >  2:21071/1‑93 (MQ=255)

                                           gCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGc                                                <  2:1639512/93‑1 (MQ=255)

                                              ccATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCttt                                             <  1:2442685/93‑1 (MQ=255)

                                              ccATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACAACCGCCGGGAATTGGGCttt                                             <  2:9263996/93‑1 (MQ=255)

                                               cATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTc                                            >  2:5041588/1‑93 (MQ=255)

                                               cATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTc                                            <  1:3545746/93‑1 (MQ=255)

                                                aTGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCa                                           <  2:9969749/93‑1 (MQ=255)

                                                aTGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCa                                           <  2:3154512/93‑1 (MQ=255)

                                                aTGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCa                                           <  1:164319/93‑1 (MQ=255)

                                                aTGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCa                                           >  1:9338180/1‑93 (MQ=255)

                                                aTGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCa                                           >  1:4487372/1‑93 (MQ=255)

                                                 tGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCAc                                          <  1:1743104/93‑1 (MQ=255)

                                                  gCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACt                                         <  1:6684996/93‑1 (MQ=255)

                                                   cGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTa                                        <  1:6088711/93‑1 (MQ=255)

                                                     ttttttCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTAtt                                      >  1:6953223/1‑93 (MQ=255)

                                                     ttttttCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTAtt                                      >  2:7317516/1‑93 (MQ=255)

                                                     ttttttCAGCTCTTCGACGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTAtt                                      <  2:5471187/93‑1 (MQ=255)

                                                        tttCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGa                                   <  1:5416449/93‑1 (MQ=255)

                                                         ttCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGaa                                  <  1:6154021/93‑1 (MQ=255)

                                                          tCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGaaa                                 <  2:32900/93‑1 (MQ=255)

                                                            aGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATg                               <  2:7413821/93‑1 (MQ=255)

                                                            aGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATg                               >  1:4020669/1‑93 (MQ=255)

                                                            aGCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATg                               >  2:9425439/1‑93 (MQ=255)

                                                             gCTCTTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGc                              <  1:7629480/93‑1 (MQ=255)

                                                              ctctTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCg                             <  2:2428946/93‑1 (MQ=255)

                                                               ttttCGATGTTCGGCTGCTTATTCTCT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGa                            <  2:4790424/91‑1 (MQ=255)

                                                               tctTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGa                            <  2:9321060/93‑1 (MQ=255)

                                                               tctTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGa                            >  2:1155154/1‑93 (MQ=255)

                                                               tctTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGa                            >  1:4826855/1‑93 (MQ=255)

                                                                ctTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGAt                           <  2:3746521/93‑1 (MQ=255)

                                                                ctTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGAt                           >  2:3604795/1‑93 (MQ=255)

                                                                ctTCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGAt                           >  1:6783553/1‑93 (MQ=255)

                                                                 ttCGATGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATc                          <  2:2995366/93‑1 (MQ=255)

                                                                   cGATGTTCGGCTGCTTATTCACTCCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATcg                         >  2:8339419/1‑93 (MQ=255)

                                                                     aTGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATcgccg                      >  2:5334028/1‑93 (MQ=255)

                                                                      tGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATcgccgc                     >  1:8620633/1‑93 (MQ=255)

                                                                      tGTTCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATcgccgc                     <  2:600984/93‑1 (MQ=255)

                                                                       tttCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCgccgcc                    <  2:2941171/92‑1 (MQ=255)

                                                                        ttCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGccc                   >  2:3425761/1‑93 (MQ=255)

                                                                         tCGGCTGCTTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCg                  >  1:1329223/1‑93 (MQ=255)

                                                                           ggCTGCTTATTCGCT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTa                <  1:1201295/93‑1 (MQ=255)

                                                                            gctgctTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTaa               >  1:1289788/1‑93 (MQ=255)

                                                                               gctTATTCACT‑CCCCTCTGGATTTGGGTGTAATCATCACCGCCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCg            <  2:6199029/93‑1 (MQ=255)

                                                                                ctTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGc           >  2:6999158/1‑93 (MQ=255)

                                                                                ctTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGc           >  1:7480355/1‑93 (MQ=255)

                                                                                ctTATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGc           <  2:2129960/93‑1 (MQ=255)

                                                                                 ttATTCACG‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCa          <  2:4127342/93‑1 (MQ=255)

                                                                                 ttATGCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCa          >  2:1910326/1‑93 (MQ=255)

                                                                                  tATTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAg         >  1:2740652/1‑93 (MQ=255)

                                                                                   aTTCTCT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGt        <  1:4113227/93‑1 (MQ=255)

                                                                                   aTTCACT‑CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGt        >  1:3374174/1‑93 (MQ=255)

ATCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACT‑TCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGCCAG  >  NC_000913/1973903‑1974084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCTATCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTTCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGCCAGTG  >  NC_000913/1973900‑1974086

TCTATCAACTTGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTC                                                                                               <  SRR4302540.8866771/94‑1 (MQ=60)

 CTATCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCC                                                                                              <  SRR4302540.6810256/94‑1 (MQ=60)

  TATCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCC                                                                                             >  SRR4302540.3787403/1‑94 (MQ=60)

   ATCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCC                                                                                            >  SRR4302540.3530836/1‑94 (MQ=60)

   ATCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCC                                                                                            >  SRR4302540.5099557/1‑94 (MQ=60)

   ATCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCC                                                                                            <  SRR4302540.6169132/94‑1 (MQ=60)

     CAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCC                                                                                          >  SRR4302540.896016/1‑94 (MQ=60)

      AACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCT                                                                                         >  SRR4302540.4128627/1‑94 (MQ=60)

      AACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCT                                                                                         >  SRR4302540.7381097/1‑94 (MQ=60)

       ACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTG                                                                                        >  SRR4302540.2124936/1‑94 (MQ=60)

          GGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCT                                                                                     <  SRR4302540.3311988/94‑1 (MQ=60)

             CGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGCTCGGCTGCTTATTCACTCCCCCCTGGCTTTG                                                                                  >  SRR4302540.8675931/1‑94 (MQ=60)

               AGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGG                                                                                <  SRR4302540.6784582/94‑1 (MQ=60)

                GATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGT                                                                               <  SRR4302540.1065679/94‑1 (MQ=60)

                 ATCACCCCGCAATTTACTCAATCGACTTCGCTTCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCCCTTCCCCCTGGCTTTGGCTG                                                                              >  SRR4302540.5759342/1‑94 (MQ=60)

                  TCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGT                                                                             <  SRR4302540.3250975/94‑1 (MQ=60)

                   CACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTA                                                                            >  SRR4302540.711510/1‑94 (MQ=60)

                   CACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTA                                                                            <  SRR4302540.7328701/94‑1 (MQ=60)

                    ACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAA                                                                           >  SRR4302540.1452624/1‑94 (MQ=60)

                    ACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAA                                                                           <  SRR4302540.9171148/94‑1 (MQ=60)

                     CCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGATGCTTATTCACTCCCCCCTGGCTTTGGGTGTAAT                                                                          >  SRR4302540.8211674/1‑94 (MQ=60)

                      CCCGCAATTTTCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATC                                                                         >  SRR4302540.7863930/1‑94 (MQ=60)

                      CCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATC                                                                         <  SRR4302540.1879872/94‑1 (MQ=60)

                      CCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATC                                                                         >  SRR4302540.7217210/1‑94 (MQ=60)

                      CCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATC                                                                         >  SRR4302540.2183645/1‑94 (MQ=60)

                       CCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCA                                                                        >  SRR4302540.9961486/1‑94 (MQ=60)

                        CGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCAT                                                                       <  SRR4302540.2589148/94‑1 (MQ=60)

                        CGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCAT                                                                       >  SRR4302540.8034949/1‑94 (MQ=60)

                           AATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCAC                                                                    <  SRR4302540.7905816/94‑1 (MQ=60)

                           AATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCAC                                                                    <  SRR4302540.9116513/94‑1 (MQ=60)

                              TTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTCTTCACTCCCCCCTGGCTTTGGGTGTAATCttcacatc                                                                 >  SRR4302540.3438489/1‑86 (MQ=60)

                              TTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCAC                                                                 >  SRR4302540.7610863/1‑94 (MQ=60)

                               TCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACC                                                                <  SRR4302540.311223/94‑1 (MQ=60)

                               TCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACC                                                                >  SRR4302540.2223995/1‑94 (MQ=60)

                               TCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACC                                                                <  SRR4302540.5274743/94‑1 (MQ=60)

                               TCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACC                                                                <  SRR4302540.1341149/94‑1 (MQ=60)

                               TCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGGGTAATCATCACCACC                                                                <  SRR4302540.9898982/94‑1 (MQ=60)

                                CCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCG                                                               >  SRR4302540.31902/1‑94 (MQ=60)

                                 CGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGC                                                              >  SRR4302540.8491418/1‑94 (MQ=60)

                                 CGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGC                                                              >  SRR4302540.4332492/1‑94 (MQ=60)

                                    AATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGG                                                           >  SRR4302540.4858643/1‑94 (MQ=60)

                                     ATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGG                                                          <  SRR4302540.872733/94‑1 (MQ=60)

                                     ATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGG                                                          >  SRR4302540.5208148/1‑94 (MQ=60)

                                       CGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAA                                                        >  SRR4302540.9779639/1‑94 (MQ=60)

                                         ACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATT                                                      <  SRR4302540.7036602/94‑1 (MQ=60)

                                          CTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTG                                                     >  SRR4302540.8305952/1‑94 (MQ=60)

                                                 CCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTC                                              <  SRR4302540.2468990/94‑1 (MQ=60)

                                                 CCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTC                                              <  SRR4302540.2741630/94‑1 (MQ=60)

                                                  CATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCA                                             >  SRR4302540.9449478/1‑94 (MQ=60)

                                                  CATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCA                                             <  SRR4302540.3584469/94‑1 (MQ=60)

                                                  CATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCA                                             >  SRR4302540.4536042/1‑94 (MQ=60)

                                                  CATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCA                                             >  SRR4302540.8877629/1‑94 (MQ=60)

                                                   ATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCAC                                            >  SRR4302540.4897215/1‑94 (MQ=60)

                                                   ATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCAC                                            <  SRR4302540.165964/94‑1 (MQ=60)

                                                   ATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCAC                                            >  SRR4302540.9903519/1‑94 (MQ=60)

                                                    TGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACT                                           >  SRR4302540.2495902/1‑94 (MQ=60)

                                                    TGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACT                                           <  SRR4302540.1761968/94‑1 (MQ=60)

                                                    TGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACT                                           <  SRR4302540.6833856/94‑1 (MQ=60)

                                                     GCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTA                                          >  SRR4302540.1488141/1‑94 (MQ=60)

                                                     GCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTA                                          <  SRR4302540.6758817/94‑1 (MQ=60)

                                                      CGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTAT                                         <  SRR4302540.6156475/94‑1 (MQ=60)

                                                       GTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATT                                        >  SRR4302540.7030584/1‑94 (MQ=60)

                                                       GTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATT                                        >  SRR4302540.7030582/1‑94 (MQ=60)

                                                        TTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTA                                       >  SRR4302540.10036717/1‑94 (MQ=60)

                                                         TTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGTGAATTGGGCTTTCACTATTAG                                      <  SRR4302540.6923392/94‑1 (MQ=60)

                                                         TTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAG                                      <  SRR4302540.2287880/94‑1 (MQ=60)

                                                         TTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAG                                      <  SRR4302540.5203921/94‑1 (MQ=60)

                                                           TTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAA                                    <  SRR4302540.5476011/94‑1 (MQ=60)

                                                           TTTCAGCGCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAA                                    <  SRR4302540.3697001/94‑1 (MQ=60)

                                                            TTCAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAA                                   <  SRR4302540.6222573/94‑1 (MQ=60)

                                                              CAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATG                                 <  SRR4302540.5309382/94‑1 (MQ=60)

                                                              CAGCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATG                                 >  SRR4302540.4063990/1‑94 (MQ=60)

                                                                GCTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCG                               <  SRR4302540.7715288/94‑1 (MQ=60)

                                                                 CTCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGA                              >  SRR4302540.4878543/1‑94 (MQ=60)

                                                                  TCTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGAT                             >  SRR4302540.6858564/1‑94 (MQ=60)

                                                                   CTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATC                            <  SRR4302540.3826202/94‑1 (MQ=60)

                                                                   CTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATC                            <  SRR4302540.1665056/94‑1 (MQ=60)

                                                                   CTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATC                            <  SRR4302540.9365032/94‑1 (MQ=60)

                                                                   CTTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATC                            <  SRR4302540.7736500/94‑1 (MQ=60)

                                                                   CTTCGATGTTCGGCTGCTTATTCACCCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATC                            <  SRR4302540.7444509/94‑1 (MQ=60)

                                                                    TTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCG                           >  SRR4302540.1450494/1‑94 (MQ=60)

                                                                    TTCGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCG                           >  SRR4302540.8721910/1‑94 (MQ=60)

                                                                      CGATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCC                         >  SRR4302540.7231430/1‑94 (MQ=60)

                                                                       GATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCG                        >  SRR4302540.657315/1‑94 (MQ=60)

                                                                        ATGTTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGC                       >  SRR4302540.8720770/1‑94 (MQ=60)

                                                                         TGTTCGGCTGCTTATTCACTCCCCCCTGGCCTTGGGTGTAATCATCACCCCCGCCGGGAATTGGGCTTTCACTATTAAAAATGagttccgctcc                      >  SRR4302540.2204708/1‑83 (MQ=60)

                                                                           TTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCG                    >  SRR4302540.573265/1‑94 (MQ=60)

                                                                           TTCGGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCG                    >  SRR4302540.1343114/1‑94 (MQ=60)

                                                                              GGCTGCTTATTCGCTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAA                 <  SRR4302540.1213651/94‑1 (MQ=60)

                                                                              GGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAA                 >  SRR4302540.1303117/1‑94 (MQ=60)

                                                                              GGCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAA                 <  SRR4302540.1213936/94‑1 (MQ=60)

                                                                               GCTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAAC                <  SRR4302540.1844285/94‑1 (MQ=60)

                                                                                CTGCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACC               <  SRR4302540.526970/94‑1 (MQ=60)

                                                                                  GCTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGC             >  SRR4302540.7563843/1‑94 (MQ=60)

                                                                                   CTTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGNGAATTGGGGTTTCACTATTAGAANTNNGANCGCCGCCNGNAACgnnn            >  SRR4302540.8042998/1‑90 (MQ=60)

                                                                                    TTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAG           >  SRR4302540.809295/1‑94 (MQ=60)

                                                                                    TTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAG           >  SRR4302540.2770245/1‑94 (MQ=60)

                                                                                    TTATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACAGCAG           >  SRR4302540.5907968/1‑94 (MQ=60)

                                                                                     TATTCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGT          >  SRR4302540.3411048/1‑94 (MQ=60)

                                                                                      ATTCTCTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTC         <  SRR4302540.4157638/94‑1 (MQ=60)

                                                                                        TCACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGC       >  SRR4302540.3371391/1‑94 (MQ=60)

                                                                                         CACTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGCC      >  SRR4302540.2068799/1‑94 (MQ=60)

                                                                                           CTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGCCAG    <  SRR4302540.9209101/94‑1 (MQ=60)

                                                                                           CTCCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGCCAG    >  SRR4302540.3052448/1‑94 (MQ=60)

                                                                                            TTCCCGCTGGCTTTGGGTCTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGCCAGT   <  SRR4302540.7350129/94‑1 (MQ=60)

                                                                                             CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGCCAGTG  >  SRR4302540.4403504/1‑94 (MQ=60)

                                                                                             CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGCCAGTG  <  SRR4302540.7425021/94‑1 (MQ=60)

                                                                                             CCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGCCAGTG  <  SRR4302540.626295/94‑1 (MQ=60)

TCTATCAACTGGTCGAGATCACCCCGCAATTTCCGCAATCGACTTTGCTCCATGCGTTTTTTCAGCTCTTCGATGTTCGGCTGCTTATTCACTTCCCCCTGGCTTTGGGTGTAATCATCACCACCGCCGGGAATTGGGCTTTCACTATTAGAAATGCGATCGCCGCCCGTAACCGCAGTCGCCAGTG  >  NC_000913/1973900‑1974086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`