Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,974,585	A→G	R193R (CGT→CGC)	motA ←	MotA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,974,585	0	A	G	100.0%	663.3 / NA	210	R193R (CGT→CGC)	motA	MotA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (86/124); total (86/124)

Only 100 of 228 total aligned reads displayed.

TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT  >  NC_000913/1974495‑1974674

tAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCg                                                                                          >  1:5996773/1‑93 (MQ=255)

 aaTGGGGAAATAAATCCGTAAGACAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGa                                                                                         >  1:529131/1‑93 (MQ=255)

 aaTGGGGAAATAAACCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGa                                                                                         <  2:3560411/93‑1 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                       >  2:112344/1‑93 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                       >  1:4408287/1‑93 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                       >  2:9589057/1‑93 (MQ=255)

    ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCg                                                                                      >  1:7424031/1‑93 (MQ=255)

     gggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCgg                                                                                     >  1:3520002/1‑93 (MQ=255)

     gggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCgg                                                                                     >  2:1921111/1‑93 (MQ=255)

      ggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGc                                                                                    <  1:6108574/93‑1 (MQ=255)

      gaaaataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGc                                                                                    <  2:4075843/91‑1 (MQ=255)

       gAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCt                                                                                   >  1:1034057/1‑93 (MQ=255)

        aaataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTg                                                                                  >  2:3206639/1‑93 (MQ=255)

           taaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAc                                                                               >  1:7173421/1‑93 (MQ=255)

           taaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAc                                                                               >  2:7137991/1‑93 (MQ=255)

            aaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAcc                                                                              <  2:4809653/93‑1 (MQ=255)

            aaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAcc                                                                              >  1:8772681/1‑93 (MQ=255)

              atCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTa                                                                            >  1:533216/1‑93 (MQ=255)

              atCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTa                                                                            >  1:3728343/1‑93 (MQ=255)

              atCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTa                                                                            <  2:1418732/93‑1 (MQ=255)

               tCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTaa                                                                           >  2:4588659/1‑93 (MQ=255)

               cccGAAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGTCAGGGCGATCGGCTGAACCTaa                                                                           <  1:1212794/92‑1 (MQ=255)

                ccGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAc                                                                          <  1:821952/93‑1 (MQ=255)

                ccGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAc                                                                          <  1:7778754/93‑1 (MQ=255)

                ccGTAAGCCAATAAAATGCCGAGGAAAGGCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAc                                                                          <  1:8319306/93‑1 (MQ=255)

                 cGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcg                                                                         >  2:3081164/1‑93 (MQ=255)

                  gTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcgc                                                                        >  1:9242474/1‑93 (MQ=255)

                   tAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcgcg                                                                       >  2:1170165/1‑93 (MQ=255)

                    aaGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGt                                                                      <  1:2063441/93‑1 (MQ=255)

                     aGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTg                                                                     >  1:6286946/1‑93 (MQ=255)

                      gCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGa                                                                    >  2:5095645/1‑93 (MQ=255)

                       ccAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGaa                                                                   <  2:484800/93‑1 (MQ=255)

                       ccAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGaa                                                                   <  1:1003601/93‑1 (MQ=255)

                       ccAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACCCGTGaa                                                                   <  2:9759785/93‑1 (MQ=255)

                        cAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAc                                                                  >  1:4684341/1‑93 (MQ=255)

                        cAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCCGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAc                                                                  >  1:3221018/1‑93 (MQ=255)

                          aTAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGa                                                                <  1:9823135/93‑1 (MQ=255)

                             aaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccc                                                             >  1:2791686/1‑93 (MQ=255)

                              aaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAcccc                                                            >  1:1923300/1‑93 (MQ=255)

                               aTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccccc                                                           <  1:1468118/93‑1 (MQ=255)

                               aTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccccc                                                           <  2:2685829/93‑1 (MQ=255)

                                agCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCa                                                          <  1:8009349/92‑1 (MQ=255)

                                 gCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAt                                                         <  1:8889606/93‑1 (MQ=255)

                                 gCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCCGAACCTAACGCGTGAACGACCCCCAt                                                         >  2:5210675/1‑93 (MQ=255)

                                  ccGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccccactt                                                        >  1:7555944/1‑89 (MQ=255)

                                  ccGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAtt                                                        <  2:7292605/93‑1 (MQ=255)

                                   cGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTa                                                       >  1:7010942/1‑93 (MQ=255)

                                    gAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTAc                                                      <  1:7914403/93‑1 (MQ=255)

                                     aGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACa                                                     <  2:5620318/93‑1 (MQ=255)

                                         aaGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑Cg                                                >  1:9349357/1‑93 (MQ=255)

                                           gTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGca                                              >  2:7212403/1‑93 (MQ=255)

                                            tCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGcaa                                             >  1:5754757/1‑93 (MQ=255)

                                             ccccACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGcaac                                            <  2:8216516/93‑1 (MQ=255)

                                             ccccACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGcaac                                            <  2:6702759/93‑1 (MQ=255)

                                               ccaccaTCGCATGTGCCATAAGCACACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGcaacaa                                          <  1:48266/93‑1 (MQ=255)

                                                caccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAAt                                         <  1:5467984/93‑1 (MQ=255)

                                                 accaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGA‑CGCAACAATa                                        >  1:3806695/1‑93 (MQ=255)

                                                 accaTCGCATGTGCGATAAGCGCAACCAGCTCGGCGGCATGGCGATCGGCTGAACCTAACTCGTGAACGACCCCCA‑TACAACGCGCAACAAtc                                        >  2:3520664/1‑92 (MQ=255)

                                                  ccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAATGCGTGAACGACCCCCATTACAGC‑CGCAACAATAc                                       >  2:8403671/1‑93 (MQ=255)

                                                  ccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATAc                                       >  2:3788443/1‑93 (MQ=255)

                                                  ccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATAc                                       >  2:3168734/1‑93 (MQ=255)

                                                  ccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCAGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATAc                                       <  1:1640680/93‑1 (MQ=255)

                                                   caTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATAcc                                      >  2:1565866/1‑93 (MQ=255)

                                                     tCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCaa                                    >  1:8609657/1‑93 (MQ=255)

                                                     tCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCaa                                    >  2:9136592/1‑93 (MQ=255)

                                                      cGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCaaa                                   >  1:2590920/1‑93 (MQ=255)

                                                      cGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCaaa                                   <  1:3342855/93‑1 (MQ=255)

                                                       gCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAAc                                  <  2:2343632/93‑1 (MQ=255)

                                                       gCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAAc                                  <  2:4361947/93‑1 (MQ=255)

                                                        cATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACAAAAcc                                 >  1:6744735/1‑92 (MQ=255)

                                                           gtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCg                              <  2:9617197/93‑1 (MQ=255)

                                                             gCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGa                            <  1:1587617/93‑1 (MQ=255)

                                                              cGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGaa                           <  2:3267923/93‑1 (MQ=255)

                                                               gATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAg                          <  2:3684055/93‑1 (MQ=255)

                                                               gATAAGCGCACCCAGCGCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAg                          <  1:5566514/93‑1 (MQ=255)

                                                                aTAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGt                         <  2:2578508/93‑1 (MQ=255)

                                                                 tAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTg                        >  1:4211973/1‑93 (MQ=255)

                                                                  aaGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGa                       <  1:10016829/93‑1 (MQ=255)

                                                                   aGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAg                      <  1:2941456/93‑1 (MQ=255)

                                                                     cgcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTc                    <  1:9507667/93‑1 (MQ=255)

                                                                      gcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTcc                   >  1:4008454/1‑93 (MQ=255)

                                                                       cACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTccc                  <  2:3907482/93‑1 (MQ=255)

                                                                       cACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTccc                  <  1:7748340/93‑1 (MQ=255)

                                                                       cACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTccc                  >  2:7688563/1‑93 (MQ=255)

                                                                        aCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGAcccc                 >  2:1395391/1‑93 (MQ=255)

                                                                         cccAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCg                <  1:8492520/93‑1 (MQ=255)

                                                                          ccAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGa               >  1:2218048/1‑93 (MQ=255)

                                                                          ccAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGa               <  1:5210548/93‑1 (MQ=255)

                                                                           cAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAc              <  2:8660125/93‑1 (MQ=255)

                                                                            aGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAcc             >  1:5262874/1‑93 (MQ=255)

                                                                            aGCTCGGCGGCAGGGCGAGCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAcc             <  1:804400/93‑1 (MQ=255)

                                                                             gCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCa            >  2:5484504/1‑93 (MQ=255)

                                                                              cTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGTCCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAg           <  1:6074449/93‑1 (MQ=255)

                                                                                cggcggCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgcg         <  1:6922591/93‑1 (MQ=255)

                                                                                 cgcggcAGGGCGATCGGCTGAACCTAACTCGTGAACGCCCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgcgc        <  1:1427012/92‑1 (MQ=255)

                                                                                  gcggcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGcc       <  1:9670065/93‑1 (MQ=255)

                                                                                   cggcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCa      <  2:6032153/93‑1 (MQ=255)

                                                                                     gcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGa    <  1:6594616/93‑1 (MQ=255)

                                                                                     gcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGa    <  2:7980729/93‑1 (MQ=255)

                                                                                       aGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACt  <  1:4831874/93‑1 (MQ=255)

TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC‑CGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT  >  NC_000913/1974495‑1974674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  >  NC_000913/1974492‑1974678

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGG                                                                                               >  SRR4302540.6578792/1‑94 (MQ=60)

 GCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGC                                                                                              <  SRR4302540.3096576/94‑1 (MQ=60)

 GCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGC                                                                                              >  SRR4302540.5732921/1‑94 (MQ=60)

  CTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCG                                                                                             >  SRR4302540.9886169/1‑94 (MQ=60)

  CTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCG                                                                                             <  SRR4302540.3501146/94‑1 (MQ=60)

  CTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCG                                                                                             >  SRR4302540.6089332/1‑94 (MQ=60)

  CTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCG                                                                                             >  SRR4302540.930893/1‑94 (MQ=60)

  CTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCG                                                                                             >  SRR4302540.6063225/1‑94 (MQ=60)

   TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGA                                                                                            >  SRR4302540.534849/1‑94 (MQ=60)

   TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGA                                                                                            >  SRR4302540.1720940/1‑94 (MQ=60)

   TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGA                                                                                            >  SRR4302540.5447444/1‑94 (MQ=60)

   TAATGGGGAAATAAATCCGTAAGACAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGA                                                                                            >  SRR4302540.534850/1‑94 (MQ=60)

    AATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGAT                                                                                           <  SRR4302540.3769560/94‑1 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          >  SRR4302540.3544713/1‑94 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          >  SRR4302540.4456080/1‑94 (MQ=60)

     AGGGGGAAATAAAACCGAAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCAGGTGCGATAAGCGCAACCAGCTCGGCGGCAGGGCGATC                                                                                          <  SRR4302540.7144342/94‑1 (MQ=60)

      TGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCG                                                                                         >  SRR4302540.5408057/1‑94 (MQ=60)

      TGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCG                                                                                         >  SRR4302540.7056680/1‑94 (MQ=60)

      TGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCG                                                                                         >  SRR4302540.7506729/1‑94 (MQ=60)

      TGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCG                                                                                         <  SRR4302540.1706122/94‑1 (MQ=60)

       GGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGG                                                                                        >  SRR4302540.3558359/1‑94 (MQ=60)

       GGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGG                                                                                        <  SRR4302540.8429759/94‑1 (MQ=60)

       GGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGG                                                                                        <  SRR4302540.8429757/94‑1 (MQ=60)

        GGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGC                                                                                       >  SRR4302540.7448369/1‑94 (MQ=60)

         gaaaagaaaacagaAAGCCAATAAAATGCCGAGGAAAGTCCCCTCCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCT                                                                                      <  SRR4302540.2057145/80‑1 (MQ=60)

         GGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCT                                                                                      <  SRR4302540.9951631/94‑1 (MQ=60)

         GGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCT                                                                                      >  SRR4302540.1044570/1‑94 (MQ=60)

         GGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCT                                                                                      <  SRR4302540.6176603/94‑1 (MQ=60)

         GGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCT                                                                                      <  SRR4302540.6176604/94‑1 (MQ=60)

          GAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTG                                                                                     >  SRR4302540.8052074/1‑94 (MQ=60)

             ATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAC                                                                                  >  SRR4302540.7253376/1‑94 (MQ=60)

             ATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAGAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAC                                                                                  <  SRR4302540.4269017/94‑1 (MQ=60)

              TAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACC                                                                                 >  SRR4302540.8874324/1‑94 (MQ=60)

              AAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACC                                                                                 <  SRR4302540.8125114/94‑1 (MQ=60)

               taatcgtTAAGCCACTAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTGGGCGGCAGGGCGATCGGCTGAACCT                                                                                <  SRR4302540.9035009/87‑1 (MQ=60)

                AATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTA                                                                               >  SRR4302540.538982/1‑94 (MQ=60)

                AATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTA                                                                               >  SRR4302540.3769016/1‑94 (MQ=60)

                 ATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAA                                                                              <  SRR4302540.1561931/94‑1 (MQ=60)

                  cccgaAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGTCAGGGCGATCGGCTGAACCTAAC                                                                             <  SRR4302540.1225226/89‑1 (MQ=60)

                  TCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAC                                                                             <  SRR4302540.164672/94‑1 (MQ=60)

                   CCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACG                                                                            <  SRR4302540.830691/94‑1 (MQ=60)

                   CCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACG                                                                            <  SRR4302540.7869685/94‑1 (MQ=60)

                   CCGTAAGCCAATAAAATGCCGAGGAAAGGCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACG                                                                            <  SRR4302540.8415879/94‑1 (MQ=60)

                   CCGTAAGACAATAAAATGCCGAAGAAAGGCCCCCCCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACG                                                                            <  SRR4302540.7869686/94‑1 (MQ=60)

                    CGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGC                                                                           >  SRR4302540.9353170/1‑94 (MQ=60)

                     GTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCG                                                                          >  SRR4302540.892499/1‑94 (MQ=60)

                       AAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTG                                                                        <  SRR4302540.2386073/94‑1 (MQ=60)

                       AAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTG                                                                        >  SRR4302540.6356924/1‑94 (MQ=60)

                       AAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTG                                                                        <  SRR4302540.2085643/94‑1 (MQ=60)

                        AGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGA                                                                       <  SRR4302540.3717555/94‑1 (MQ=60)

                          CCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAC                                                                     <  SRR4302540.6176547/94‑1 (MQ=60)

                          CCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAC                                                                     <  SRR4302540.9445735/94‑1 (MQ=60)

                          CCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAC                                                                     >  SRR4302540.9535233/1‑94 (MQ=60)

                          CCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAC                                                                     <  SRR4302540.1013789/94‑1 (MQ=60)

                          CCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAC                                                                     >  SRR4302540.4734447/1‑94 (MQ=60)

                          CCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAC                                                                     <  SRR4302540.10141875/94‑1 (MQ=60)

                          CCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCCGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAC                                                                     >  SRR4302540.3256020/1‑94 (MQ=60)

                           CAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACG                                                                    <  SRR4302540.5290386/94‑1 (MQ=60)

                             ATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGCACCTAACGCGTGAACGAC                                                                  >  SRR4302540.5034057/1‑94 (MQ=60)

                             ATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAC                                                                  <  SRR4302540.9938055/94‑1 (MQ=60)

                               AAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCC                                                                >  SRR4302540.2821827/1‑94 (MQ=60)

                                AAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCC                                                               >  SRR4302540.1944268/1‑94 (MQ=60)

                                  ATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCA                                                             >  SRR4302540.764374/1‑94 (MQ=60)

                                  ATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCA                                                             <  SRR4302540.1484141/94‑1 (MQ=60)

                                   TGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAT                                                            <  SRR4302540.1192882/94‑1 (MQ=60)

                                   TGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAT                                                            <  SRR4302540.6908877/94‑1 (MQ=60)

                                   AGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAT                                                            <  SRR4302540.8102534/94‑1 (MQ=60)

                                    GCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCactt                                                           >  SRR4302540.7640671/1‑90 (MQ=60)

                                    GCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATT                                                           <  SRR4302540.8992515/94‑1 (MQ=60)

                                     CCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTA                                                          >  SRR4302540.7088770/1‑94 (MQ=60)

                                      cgcaGAAAGTCCCCCCCATGGCATGTGCGATAGGCGCACCAAGCTGGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTAC                                                         <  SRR4302540.8994025/90‑1 (MQ=60)

                                      CGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCCTTAC                                                         >  SRR4302540.2108755/1‑94 (MQ=60)

                                      CGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTAC                                                         <  SRR4302540.3189250/94‑1 (MQ=60)

                                       GAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACA                                                        <  SRR4302540.8006673/94‑1 (MQ=60)

                                          GAAAGTCCCCCCCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCC                                                     <  SRR4302540.831205/94‑1 (MQ=60)

                                          GAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCC                                                     >  SRR4302540.6106999/1‑94 (MQ=60)

                                           AAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCG                                                    >  SRR4302540.9460721/1‑94 (MQ=60)

                                             AGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCA                                                  <  SRR4302540.3351449/94‑1 (MQ=60)

                                              GTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAA                                                 >  SRR4302540.5818280/1‑94 (MQ=60)

                                               TCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAAC                                                <  SRR4302540.964857/94‑1 (MQ=60)

                                                CCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGCCCCCCATTACAGCCGCAACA                                               >  SRR4302540.6462201/1‑94 (MQ=60)

                                                CCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACA                                               >  SRR4302540.7226264/1‑94 (MQ=60)

                                                CCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACA                                               >  SRR4302540.9146329/1‑94 (MQ=60)

                                                CCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACA                                               <  SRR4302540.2049985/94‑1 (MQ=60)

                                                CCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCACTACAGCCGCAACA                                               >  SRR4302540.7743672/1‑94 (MQ=60)

                                                  CCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAAT                                             <  SRR4302540.4476306/94‑1 (MQ=60)

                                                  CCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAAT                                             <  SRR4302540.8209045/94‑1 (MQ=60)

                                                  CCACCATCGCATGTGCCATAAGCACACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAAT                                             <  SRR4302540.48754/94‑1 (MQ=60)

                                                   CACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATA                                            >  SRR4302540.3848157/1‑94 (MQ=60)

                                                   CACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATA                                            <  SRR4302540.5528173/94‑1 (MQ=60)

                                                   CACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGACGCAACAATA                                            >  SRR4302540.3848158/1‑94 (MQ=60)

                                                     CCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACC                                          <  SRR4302540.1360931/94‑1 (MQ=60)

                                                     CCATCGCATGTGCGATAAGCGCACCCAGCTCGGCAGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACC                                          <  SRR4302540.1658612/94‑1 (MQ=60)

                                                      CATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCA                                         <  SRR4302540.9903822/94‑1 (MQ=60)

                                                       ATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAA                                        >  SRR4302540.418982/1‑94 (MQ=60)

                                                       ATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAA                                        >  SRR4302540.8709701/1‑94 (MQ=60)

                                                        TCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAA                                       >  SRR4302540.2378645/1‑94 (MQ=60)

                                                        TCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAA                                       >  SRR4302540.2618856/1‑94 (MQ=60)

                                                        TCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAA                                       <  SRR4302540.6652219/94‑1 (MQ=60)

                                                         ggcaggtcCGATAAGCGCCCCCAGCTCGGCGGCAGTGCGATCGGCTGAACCTAACGCGTGAACGTCCCCCATTACAGCCGCAACAATACCAAAC                                      <  SRR4302540.2949531/86‑1 (MQ=60)

                                                         CGCATGTGCGATAAGCGCACCCAGCTGGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAC                                      <  SRR4302540.1240336/94‑1 (MQ=60)

                                                         CGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAC                                      >  SRR4302540.327271/1‑94 (MQ=60)

                                                         CGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAC                                      <  SRR4302540.3379534/94‑1 (MQ=60)

                                                         CGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAC                                      <  SRR4302540.7851052/94‑1 (MQ=60)

                                                          GCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACG                                     >  SRR4302540.6819260/1‑94 (MQ=60)

                                                          GCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACAAAACC                                     >  SRR4302540.6819261/1‑94 (MQ=60)

                                                           CATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGC                                    <  SRR4302540.2847640/94‑1 (MQ=60)

                                                              GTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGG                                 <  SRR4302540.5666800/94‑1 (MQ=60)

                                                                GCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAA                               >  SRR4302540.4828754/1‑94 (MQ=60)

                                                                GCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAA                               <  SRR4302540.1604957/94‑1 (MQ=60)

                                                                 CGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAG                              <  SRR4302540.8617678/94‑1 (MQ=60)

                                                                  GATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGT                             <  SRR4302540.4562950/94‑1 (MQ=60)

                                                                  GATAAGCGCACCCAGCGCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGT                             <  SRR4302540.5627811/94‑1 (MQ=60)

                                                                   ATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTG                            >  SRR4302540.4257833/1‑94 (MQ=60)

                                                                     AAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAG                          <  SRR4302540.10133426/94‑1 (MQ=60)

                                                                     AAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAG                          <  SRR4302540.8798161/94‑1 (MQ=60)

                                                                     AAGCGCACCAAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACTCGTGAACGGCCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAG                          <  SRR4302540.5033635/94‑1 (MQ=60)

                                                                      AGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGT                         <  SRR4302540.2973772/94‑1 (MQ=60)

                                                                      AGCGCACCCAGCGTGGAGGCAGGGCGATCGGCTTAACCGAACGCGTTAACGACCCCAATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGT                         <  SRR4302540.1458711/94‑1 (MQ=60)

                                                                        CGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCC                       <  SRR4302540.9620301/94‑1 (MQ=60)

                                                                        CGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCC                       >  SRR4302540.4051612/1‑94 (MQ=60)

                                                                         GCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCC                      <  SRR4302540.8129782/94‑1 (MQ=60)

                                                                          CACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCC                     <  SRR4302540.7838805/94‑1 (MQ=60)

                                                                            CCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGA                   >  SRR4302540.2241970/1‑94 (MQ=60)

                                                                            CCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGA                   <  SRR4302540.8591196/94‑1 (MQ=60)

                                                                            CCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGCTCCCGA                   >  SRR4302540.5601142/1‑94 (MQ=60)

                                                                             CCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAC                  <  SRR4302540.5954145/94‑1 (MQ=60)

                                                                             CCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAC                  <  SRR4302540.5267318/94‑1 (MQ=60)

                                                                              CAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACC                 >  SRR4302540.5320299/1‑94 (MQ=60)

                                                                              CAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCCGAAGTGAGTCCCCGACC                 <  SRR4302540.7594092/94‑1 (MQ=60)

                                                                               AGCTCGGCGGCAGGGCGAGCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCA                <  SRR4302540.812944/94‑1 (MQ=60)

                                                                                 CTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGTCCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGC              <  SRR4302540.6141997/94‑1 (MQ=60)

                                                                                   CGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGC            <  SRR4302540.6999624/94‑1 (MQ=60)

                                                                                    CGCGGCAGGGCGATCGGCTGAACCTAACTCGTGAACGCCCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCC           <  SRR4302540.1442459/94‑1 (MQ=60)

                                                                                     GCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCA          <  SRR4302540.9783871/94‑1 (MQ=60)

                                                                                       GGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGA        >  SRR4302540.2625932/1‑94 (MQ=60)

                                                                                        GCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCCACAATACCAAACGCCGGAAGAGAGTCCCAGACCAGCGCCAGAC       >  SRR4302540.5384788/1‑94 (MQ=60)

                                                                                        GCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGAC       <  SRR4302540.6667650/94‑1 (MQ=60)

                                                                                         CAGGGCGATCGGCTGAACCTAACGCGTTAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT      <  SRR4302540.3905261/94‑1 (MQ=60)

                                                                                         CAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT      <  SRR4302540.10155537/94‑1 (MQ=60)

                                                                                          AGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTG     >  SRR4302540.7921651/1‑94 (MQ=60)

                                                                                          AGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTG     <  SRR4302540.4883319/94‑1 (MQ=60)

                                                                                          AGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTG     <  SRR4302540.4883635/94‑1 (MQ=60)

                                                                                          AGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTACCCGACCAGCGCCAGACTG     >  SRR4302540.4851711/1‑94 (MQ=60)

                                                                                             GCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  >  SRR4302540.4960615/1‑94 (MQ=60)

                                                                                             GCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  <  SRR4302540.6154324/94‑1 (MQ=60)

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  >  NC_000913/1974492‑1974678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`