Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,974,585	A→G	R193R (CGT→CGC)	motA ←	MotA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,974,585	0	A	G	100.0%	622.6 / NA	197	R193R (CGT→CGC)	motA	MotA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (110/87); total (110/87)

Only 100 of 208 total aligned reads displayed.

TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGAC  >  NC_000913/1974495‑1974673

tAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCg                                                                                        >  2:6106543/1‑93 (MQ=255)

tAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCg                                                                                        >  2:5757587/1‑93 (MQ=255)

 aaTGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGa                                                                                       <  2:442553/93‑1 (MQ=255)

  aTGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGAt                                                                                      <  2:296475/93‑1 (MQ=255)

  aTGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGAt                                                                                      <  1:4537633/93‑1 (MQ=255)

  aTGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGAt                                                                                      <  1:2828271/93‑1 (MQ=255)

   tGGGGAAATAAGTCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCTCCCAGCTCGGCGGCAGGGCGATc                                                                                     <  1:473808/93‑1 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                     >  1:1225287/1‑93 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                     <  2:961787/93‑1 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                     <  2:2081219/93‑1 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                     >  1:5996293/1‑93 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                     >  1:4906998/1‑93 (MQ=255)

     gggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCgg                                                                                   >  1:2927505/1‑93 (MQ=255)

      ggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGc                                                                                  >  1:2789834/1‑93 (MQ=255)

       gAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCt                                                                                 <  1:908022/93‑1 (MQ=255)

        aaataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTg                                                                                >  2:747082/1‑93 (MQ=255)

         aataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGa                                                                               >  1:559119/1‑93 (MQ=255)

           taaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAc                                                                             <  1:4472744/93‑1 (MQ=255)

           taaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAc                                                                             >  2:561872/1‑93 (MQ=255)

             aatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGTGCGATCGGCTGAACCt                                                                           >  1:4393201/1‑93 (MQ=255)

              atCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTa                                                                          >  1:2512308/1‑93 (MQ=255)

               tCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTaa                                                                         >  1:2645925/1‑93 (MQ=255)

               tCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTaa                                                                         <  1:4399368/93‑1 (MQ=255)

               accGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTaa                                                                         <  2:4092893/92‑1 (MQ=255)

                ccGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAc                                                                        >  2:1871649/1‑93 (MQ=255)

                 cGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcg                                                                       >  2:3073547/1‑93 (MQ=255)

                  gTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcgc                                                                      >  1:6017786/1‑93 (MQ=255)

                  gTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcgc                                                                      <  1:578730/93‑1 (MQ=255)

                    aaGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcgcgg                                                                    >  2:4659083/1‑92 (MQ=255)

                    aaGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGt                                                                    <  1:3889621/93‑1 (MQ=255)

                     aGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTg                                                                   <  2:4605165/93‑1 (MQ=255)

                      gCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGa                                                                  >  2:1079852/1‑93 (MQ=255)

                       ccAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGaa                                                                 <  2:4531111/93‑1 (MQ=255)

                        cAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAc                                                                <  2:7318/93‑1 (MQ=255)

                        cAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAc                                                                <  1:3412591/93‑1 (MQ=255)

                        cAATAAAATGACAAGGAAAGTCCCCACCATCGCACGTGCGATAAGCGCACCCAGCTCGCCGGCAGCGCGATCGGCTGAACCTCACGCGTGAAc                                                                >  2:499147/1‑93 (MQ=255)

                         aaTAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACg                                                               >  1:3349883/1‑93 (MQ=255)

                           tAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGCACCTAACGCGTGAACGAc                                                             >  1:2722147/1‑93 (MQ=255)

                             aaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccc                                                           <  2:1217743/93‑1 (MQ=255)

                               aTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccccc                                                         >  2:4377462/1‑93 (MQ=255)

                               aTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccccc                                                         <  2:5283592/93‑1 (MQ=255)

                               aTGCCGAGGAAAGTACCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccccc                                                         >  2:5440647/1‑93 (MQ=255)

                                tGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCa                                                        >  1:3176701/1‑93 (MQ=255)

                                 gCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAt                                                       <  2:169474/93‑1 (MQ=255)

                                   cGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTa                                                     <  1:5482416/93‑1 (MQ=255)

                                   cGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTa                                                     >  1:2430388/1‑93 (MQ=255)

                                   cGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTa                                                     >  1:6150504/1‑93 (MQ=255)

                                    gAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTAc                                                    >  1:4007983/1‑93 (MQ=255)

                                    gAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTAc                                                    >  2:549289/1‑93 (MQ=255)

                                      ggAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAg                                                  >  2:2415015/1‑93 (MQ=255)

                                       gAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGc                                                 <  1:793269/93‑1 (MQ=255)

                                        aaaGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGcc                                                <  2:1560018/93‑1 (MQ=255)

                                           gTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGca                                             >  1:45761/1‑93 (MQ=255)

                                             ccccACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGcaac                                           >  1:5233086/1‑93 (MQ=255)

                                              cccACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGcaaca                                          <  2:4767913/93‑1 (MQ=255)

                                               ccaccaTCGCATGTGCGATAAGCGCACCGAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGcaacaa                                         <  1:6213647/93‑1 (MQ=255)

                                               ccaccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGcaacaa                                         >  2:2489794/1‑93 (MQ=255)

                                                caccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCACAACAAt                                        >  1:3158673/1‑93 (MQ=255)

                                                 accaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATa                                       >  2:2027477/1‑93 (MQ=255)

                                                   caTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATAcc                                     >  1:1009200/1‑93 (MQ=255)

                                                    aTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCa                                    >  1:363542/1‑93 (MQ=255)

                                                    aTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCa                                    >  1:3474955/1‑93 (MQ=255)

                                                     tCGCATGTGCGATAGGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCaa                                   <  2:1846591/93‑1 (MQ=255)

                                                     tCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCaa                                   >  2:2893486/1‑93 (MQ=255)

                                                     tCGCATCTGCGATAAGCTCACCCAGCTCGGCTGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATTCCaa                                   <  2:2652795/93‑1 (MQ=255)

                                                      cGCATGTGCGATAAGCGCGCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCaaa                                  <  2:2594796/93‑1 (MQ=255)

                                                      cGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCaaa                                  <  1:184706/93‑1 (MQ=255)

                                                      cGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCaaa                                  <  1:1580319/93‑1 (MQ=255)

                                                       gCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAc                                 <  1:2011615/93‑1 (MQ=255)

                                                       ccATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAc                                 <  2:682349/92‑1 (MQ=255)

                                                        cATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACGCCCATTACAGCCGCAACAATACCAAACg                                >  2:3715096/1‑93 (MQ=255)

                                                          tgtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACggc                              >  1:1891937/1‑91 (MQ=255)

                                                          tgtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGcc                              >  1:5830800/1‑93 (MQ=255)

                                                           gtgCGATAAGCGCACCCAGTTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCg                             >  2:6144902/1‑93 (MQ=255)

                                                           gtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCg                             <  1:3576366/93‑1 (MQ=255)

                                                           gtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCg                             >  1:411495/1‑93 (MQ=255)

                                                           gtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCg                             <  1:4256012/93‑1 (MQ=255)

                                                             gCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGa                           >  1:850160/1‑93 (MQ=255)

                                                              cGATAAGCGCCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGaa                          <  1:1286491/93‑1 (MQ=255)

                                                              cGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGACCCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGaa                          <  2:3348687/93‑1 (MQ=255)

                                                              cGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGaa                          <  2:513734/93‑1 (MQ=255)

                                                               gATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACTCCCATTACAGCCGCAACAATACCAAACGCCGGAAg                         >  2:4252816/1‑93 (MQ=255)

                                                               gATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAg                         >  2:1365532/1‑93 (MQ=255)

                                                                  aaGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGa                      <  1:5960286/93‑1 (MQ=255)

                                                                   aGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAg                     <  1:6083161/93‑1 (MQ=255)

                                                                     cgcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTc                   <  2:2312190/93‑1 (MQ=255)

                                                                      gcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTcc                  >  1:6247503/1‑93 (MQ=255)

                                                                      gcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTcc                  >  1:5657977/1‑93 (MQ=255)

                                                                      gcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTcc                  >  2:5764482/1‑93 (MQ=255)

                                                                       cACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTccc                 <  2:4928555/93‑1 (MQ=255)

                                                                        aCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTcccc                >  2:4876658/1‑93 (MQ=255)

                                                                        aCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTcccc                >  2:272225/1‑93 (MQ=255)

                                                                          ccAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGa              >  2:785765/1‑93 (MQ=255)

                                                                           cAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGAc             >  2:1940243/1‑93 (MQ=255)

                                                                               tCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgc         >  1:4032047/1‑93 (MQ=255)

                                                                               tCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgc         >  1:3085643/1‑93 (MQ=255)

                                                                               tCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACACCGGAAGTGAGTCCCCGACCAgc         >  1:1715938/1‑93 (MQ=255)

                                                                                 ggcggcAGGGCGATCGGCTGAACCTAACTCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgcgc       <  1:1480232/93‑1 (MQ=255)

                                                                                 ggcggcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgcgc       <  1:2202250/93‑1 (MQ=255)

                                                                                      cAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGAc  <  2:2557243/93‑1 (MQ=255)

TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGAC  >  NC_000913/1974495‑1974673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  >  NC_000913/1974492‑1974678

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGG                                                                                               <  SRR4302533.2789127/94‑1 (MQ=60)

 GCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGC                                                                                              <  SRR4302533.5151676/94‑1 (MQ=60)

  CTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCG                                                                                             >  SRR4302533.2825606/1‑94 (MQ=60)

  CTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCG                                                                                             >  SRR4302533.5926857/1‑94 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          <  SRR4302533.4565105/94‑1 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          <  SRR4302533.2845671/94‑1 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          >  SRR4302533.4936728/1‑94 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          >  SRR4302533.1232630/1‑94 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          >  SRR4302533.6032609/1‑94 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          <  SRR4302533.6143266/94‑1 (MQ=60)

      TGGGGAAATAAGTCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCTCCCAGCTCGGCGGCAGGGCGATCG                                                                                         <  SRR4302533.476638/94‑1 (MQ=60)

      TGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCG                                                                                         <  SRR4302533.219156/94‑1 (MQ=60)

       GGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGG                                                                                        >  SRR4302533.1856897/1‑94 (MQ=60)

       GGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGG                                                                                        >  SRR4302533.2945418/1‑94 (MQ=60)

        GGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGC                                                                                       >  SRR4302533.2806990/1‑94 (MQ=60)

         GGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCT                                                                                      <  SRR4302533.4178175/94‑1 (MQ=60)

         GAAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCT                                                                                      <  SRR4302533.459114/94‑1 (MQ=60)

          GAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTG                                                                                     <  SRR4302533.913348/94‑1 (MQ=60)

           AAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGA                                                                                    >  SRR4302533.562441/1‑94 (MQ=60)

           AAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGA                                                                                    >  SRR4302533.6025697/1‑94 (MQ=60)

            AATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAA                                                                                   <  SRR4302533.4117827/94‑1 (MQ=60)

             ATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAC                                                                                  >  SRR4302533.2795886/1‑94 (MQ=60)

             ATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAC                                                                                  >  SRR4302533.5322111/1‑94 (MQ=60)

              TAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACC                                                                                 <  SRR4302533.4499797/94‑1 (MQ=60)

               AAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGTGCGATCGGCTGAACCT                                                                                >  SRR4302533.4419722/1‑94 (MQ=60)

                AATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTA                                                                               >  SRR4302533.2527786/1‑94 (MQ=60)

                 ATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAA                                                                              <  SRR4302533.4393200/94‑1 (MQ=60)

                 ATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAA                                                                              >  SRR4302533.2662184/1‑94 (MQ=60)

                 ATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAA                                                                              >  SRR4302533.6070619/1‑94 (MQ=60)

                 ATCCGTAAGCCAATAAAATGCCGAGGAAAGCCCCCACCATCGCATGTGCGATAAGCGCCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAA                                                                              <  SRR4302533.3161074/94‑1 (MQ=60)

                  TCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAC                                                                             <  SRR4302533.4425930/94‑1 (MQ=60)

                  TCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAC                                                                             >  SRR4302533.5177355/1‑94 (MQ=60)

                   CCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACG                                                                            <  SRR4302533.979410/94‑1 (MQ=60)

                   CCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACG                                                                            <  SRR4302533.1372847/94‑1 (MQ=60)

                    CGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGC                                                                           >  SRR4302533.6054251/1‑94 (MQ=60)

                    CGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGC                                                                           >  SRR4302533.1872848/1‑94 (MQ=60)

                     GTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCG                                                                          <  SRR4302533.582141/94‑1 (MQ=60)

                      TAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGT                                                                         <  SRR4302533.3065486/94‑1 (MQ=60)

                       AAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCTCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTG                                                                        <  SRR4302533.3409585/94‑1 (MQ=60)

                       AAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTG                                                                        <  SRR4302533.3913354/94‑1 (MQ=60)

                           CAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACG                                                                    >  SRR4302533.3370578/1‑94 (MQ=60)

                           CAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACG                                                                    <  SRR4302533.3433670/94‑1 (MQ=60)

                             ATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGCACCTAACGCGTGAACGAC                                                                  >  SRR4302533.2738853/1‑94 (MQ=60)

                             ATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAC                                                                  >  SRR4302533.2697293/1‑94 (MQ=60)

                             ATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAC                                                                  >  SRR4302533.6274530/1‑94 (MQ=60)

                                 AATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCC                                                              >  SRR4302533.6050024/1‑94 (MQ=60)

                                  ATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCA                                                             >  SRR4302533.3196240/1‑94 (MQ=60)

                                   TGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAT                                                            <  SRR4302533.635508/94‑1 (MQ=60)

                                     CCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTA                                                          >  SRR4302533.6187525/1‑94 (MQ=60)

                                     CCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTA                                                          >  SRR4302533.2445411/1‑94 (MQ=60)

                                     CCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTA                                                          >  SRR4302533.2537266/1‑94 (MQ=60)

                                     CCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTA                                                          >  SRR4302533.65798/1‑94 (MQ=60)

                                      CGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTAC                                                         >  SRR4302533.4032388/1‑94 (MQ=60)

                                      CGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTAC                                                         >  SRR4302533.4056311/1‑94 (MQ=60)

                                      CGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTAC                                                         <  SRR4302533.5515466/94‑1 (MQ=60)

                                      CGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTAA                                                         >  SRR4302533.4511025/1‑94 (MQ=60)

                                        AGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAG                                                       <  SRR4302533.5514086/94‑1 (MQ=60)

                                        AGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGCGAACGACCCCCATTACAG                                                       >  SRR4302533.2408829/1‑94 (MQ=60)

                                          GAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCC                                                     <  SRR4302533.797937/94‑1 (MQ=60)

                                             AGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCA                                                  >  SRR4302533.46080/1‑94 (MQ=60)

                                               TCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAAC                                                >  SRR4302533.5264558/1‑94 (MQ=60)

                                               TCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAAC                                                >  SRR4302533.3550584/1‑94 (MQ=60)

                                                  CCACCATCGCATGTGCGATAAGCGCACCGAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAAT                                             <  SRR4302533.6250906/94‑1 (MQ=60)

                                                  CCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAAT                                             >  SRR4302533.4420054/1‑94 (MQ=60)

                                                  CCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCACAACAAT                                             >  SRR4302533.3178111/1‑94 (MQ=60)

                                                    ACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATAC                                           <  SRR4302533.1084510/94‑1 (MQ=60)

                                                     CCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACC                                          <  SRR4302533.4493712/94‑1 (MQ=60)

                                                     CCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACC                                          >  SRR4302533.1015104/1‑94 (MQ=60)

                                                      CATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCA                                         >  SRR4302533.564413/1‑94 (MQ=60)

                                                      CATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCA                                         >  SRR4302533.365751/1‑94 (MQ=60)

                                                      CATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCA                                         >  SRR4302533.3496396/1‑94 (MQ=60)

                                                       ATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAA                                        >  SRR4302533.851680/1‑94 (MQ=60)

                                                         CGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAC                                      >  SRR4302533.5622431/1‑94 (MQ=60)

                                                         CGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAC                                      <  SRR4302533.1589837/94‑1 (MQ=60)

                                                         CGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAC                                      <  SRR4302533.185854/94‑1 (MQ=60)

                                                          GCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACG                                     <  SRR4302533.2024008/94‑1 (MQ=60)

                                                          GCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACG                                     <  SRR4302533.3863059/94‑1 (MQ=60)

                                                            ATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGGC                                   >  SRR4302533.1903484/1‑94 (MQ=60)

                                                            ATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCC                                   >  SRR4302533.880131/1‑94 (MQ=60)

                                                            ATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCC                                   >  SRR4302533.5866038/1‑94 (MQ=60)

                                                             TGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCG                                  >  SRR4302533.413963/1‑94 (MQ=60)

                                                              GTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGG                                 <  SRR4302533.3598407/94‑1 (MQ=60)

                                                              GTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGG                                 <  SRR4302533.4281671/94‑1 (MQ=60)

                                                               TGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGA                                >  SRR4302533.855136/1‑94 (MQ=60)

                                                                 CGATAAGCGCCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAG                              <  SRR4302533.1294231/94‑1 (MQ=60)

                                                                 CGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAG                              <  SRR4302533.5864341/94‑1 (MQ=60)

                                                                   ATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTG                            >  SRR4302533.3939446/1‑94 (MQ=60)

                                                                    TAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGA                           <  SRR4302533.2517772/94‑1 (MQ=60)

                                                                     AAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAG                          <  SRR4302533.5996344/94‑1 (MQ=60)

                                                                      AGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGT                         <  SRR4302533.6119944/94‑1 (MQ=60)

                                                                      AGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGT                         >  SRR4302533.346363/1‑94 (MQ=60)

                                                                        CGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCC                       >  SRR4302533.6284889/1‑94 (MQ=60)

                                                                        CGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCC                       <  SRR4302533.2903843/94‑1 (MQ=60)

                                                                        CGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCC                       >  SRR4302533.5692167/1‑94 (MQ=60)

                                                                        CGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGACGCAACAATACCAAACGCCGGAAGTGAGTCC                       >  SRR4302533.1941128/1‑94 (MQ=60)

                                                                          CACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCC                     <  SRR4302533.6218516/94‑1 (MQ=60)

                                                                              CAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACC                 <  SRR4302533.3599650/94‑1 (MQ=60)

                                                                               AGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCA                <  SRR4302533.1511182/94‑1 (MQ=60)

                                                                               AGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCA                >  SRR4302533.1697427/1‑94 (MQ=60)

                                                                                GCGCGGCGGCAGGGCGAGCGGCTGAACCTACCGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAG               <  SRR4302533.460397/94‑1 (MQ=60)

                                                                                 CTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGC              >  SRR4302533.4056593/1‑94 (MQ=60)

                                                                                 CTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGC              >  SRR4302533.3848761/1‑94 (MQ=60)

                                                                                 CTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGC              >  SRR4302533.3104614/1‑94 (MQ=60)

                                                                                 CTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACACCGGAAGTGAGTCCCCGACCAGC              >  SRR4302533.1726342/1‑94 (MQ=60)

                                                                                  TCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCACCGACCAGCG             >  SRR4302533.4884143/1‑94 (MQ=60)

                                                                                   CGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGC            >  SRR4302533.272945/1‑94 (MQ=60)

                                                                                   CGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGC            <  SRR4302533.3187376/94‑1 (MQ=60)

                                                                                   CGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACCCCGGAAGTGAGTCCCCGACCAGCGC            >  SRR4302533.1265377/1‑94 (MQ=60)

                                                                                    GGCGGCAGGGCGATCGGCTGAACCTAACTCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCC           <  SRR4302533.1489171/94‑1 (MQ=60)

                                                                                    GGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAACCGCCGGAAGTGAGTCCCCGACCAGCGCC           <  SRR4302533.5797235/94‑1 (MQ=60)

                                                                                    GGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCC           <  SRR4302533.3223850/94‑1 (MQ=60)

                                                                                    GGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCC           <  SRR4302533.2215822/94‑1 (MQ=60)

                                                                                       GGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGA        <  SRR4302533.4775764/94‑1 (MQ=60)

                                                                                          AGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTG     >  SRR4302533.4168414/1‑94 (MQ=60)

                                                                                          AGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTG     >  SRR4302533.4961812/1‑94 (MQ=60)

                                                                                            GGCGATCGGCTGAACCTACCGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTT   <  SRR4302533.5464226/94‑1 (MQ=60)

                                                                                             GCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  >  SRR4302533.5264072/1‑94 (MQ=60)

                                                                                             GCGATCGGCTCAACCTAACGCGTGAACGCCCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  <  SRR4302533.2340603/94‑1 (MQ=60)

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  >  NC_000913/1974492‑1974678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`