Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,981,425	T→C	T48A (ACC→GCC)	araH ←	ABC‑type arabinose transport system permease component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,981,425	0	T	C	99.2%	776.3 / ‑4.6	242	T48A (ACC→GCC)	araH	ABC‑type arabinose transport system permease component
Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (125/115); total (126/116)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 248 total aligned reads displayed.

AGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGTGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGC  >  NC_000913/1981335‑1981514

  tCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGACATTGCCAGGCCCAATCCGTTCATATTAATGACGGCGGCa                                                                                       >  2:5265755/1‑93 (MQ=255)

      cGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGCCCCAACCCTTTCATATTAATAAAGGCGCCAAAAt                                                                                   >  1:8412343/1‑93 (MQ=255)

        gAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAAttt                                                                                 >  1:3616236/1‑93 (MQ=255)

         aaGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTg                                                                                <  1:6603702/93‑1 (MQ=255)

          aGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTgg                                                                               >  1:5647443/1‑93 (MQ=255)

          aGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTgg                                                                               <  2:8323537/93‑1 (MQ=255)

          aGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTgg                                                                               >  1:7397903/1‑93 (MQ=255)

            cGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGa                                                                             >  2:3886944/1‑93 (MQ=255)

             gAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGAc                                                                            <  2:4576022/93‑1 (MQ=255)

              aGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACa                                                                           <  2:4382576/93‑1 (MQ=255)

              aGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACa                                                                           <  1:3393518/93‑1 (MQ=255)

               ggCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACaa                                                                          >  1:4940292/1‑93 (MQ=255)

                   gAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAACTTTGGGACAAAAAt                                                                      >  2:2286929/1‑93 (MQ=255)

                   gAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAAt                                                                      <  2:3465924/93‑1 (MQ=255)

                      caacaTGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGc                                                                   <  1:4064178/93‑1 (MQ=255)

                       aacaTGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGca                                                                  <  1:9180419/93‑1 (MQ=255)

                       aacaTGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGca                                                                  <  1:3216569/93‑1 (MQ=255)

                       aacaTGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGca                                                                  >  1:8644416/1‑93 (MQ=255)

                       aacaTGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGca                                                                  >  2:9715882/1‑93 (MQ=255)

                        acaTGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGcac                                                                 <  2:10016973/93‑1 (MQ=255)

                        acaTGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGcac                                                                 >  1:1028254/1‑93 (MQ=255)

                         caTGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGcaca                                                                <  2:6769473/93‑1 (MQ=255)

                         caTGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGcaca                                                                <  2:7058896/93‑1 (MQ=255)

                         caTGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGcaca                                                                <  1:5525250/93‑1 (MQ=255)

                         caTGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGA‑AAAAATGGCACAg                                                               >  1:5811196/1‑93 (MQ=255)

                         caTCCCACAACCCCCCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATCTGGGACAAAAATGGcaca                                                                <  2:978749/93‑1 (MQ=255)

                            gCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGc                                                             <  2:5791433/93‑1 (MQ=255)

                            gCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGc                                                             <  1:6478823/93‑1 (MQ=255)

                             ccACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCg                                                            >  1:5902540/1‑93 (MQ=255)

                               acaAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGAt                                                          >  1:6189288/1‑93 (MQ=255)

                                 aaGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATaa                                                        <  1:7973042/93‑1 (MQ=255)

                                 aaGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATaa                                                        <  1:3086260/93‑1 (MQ=255)

                                  aGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATaaa                                                       >  1:3184077/1‑93 (MQ=255)

                                  aGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATaaa                                                       >  1:8742488/1‑93 (MQ=255)

                                  aGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATaaa                                                       <  1:9095031/93‑1 (MQ=255)

                                  aGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATaaa                                                       >  2:452600/1‑93 (MQ=255)

                                   gCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAag                                                      <  1:2052628/93‑1 (MQ=255)

                                    ccaccaTCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAaga                                                     <  1:6418841/93‑1 (MQ=255)

                                    ccaccaTCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAaga                                                     >  1:2853344/1‑93 (MQ=255)

                                    ccaccaTCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAaga                                                     <  2:3139824/93‑1 (MQ=255)

                                      accaTCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGc                                                   <  2:8172964/93‑1 (MQ=255)

                                        caTCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCAc                                                 <  1:9023144/93‑1 (MQ=255)

                                         aTCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCAcg                                                >  2:6358837/1‑92 (MQ=255)

                                         aTCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCAcc                                                >  1:5295059/1‑93 (MQ=255)

                                          tCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCg                                               >  2:34392/1‑93 (MQ=255)

                                          tCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCg                                               >  1:8216890/1‑93 (MQ=255)

                                          tCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGAACAGGCGATAAAGAGCACCg                                               >  1:8198359/1‑93 (MQ=255)

                                             ccGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCaa                                            >  2:1226422/1‑93 (MQ=255)

                                             ccGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCaa                                            >  1:3673301/1‑93 (MQ=255)

                                             ccGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCaa                                            >  1:5161255/1‑93 (MQ=255)

                                              cGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCaaa                                           <  2:5241194/93‑1 (MQ=255)

                                              cGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCaaa                                           >  2:3973140/1‑93 (MQ=255)

                                              cGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCaaa                                           >  1:7573491/1‑93 (MQ=255)

                                              cGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCaaa                                           >  2:903257/1‑93 (MQ=255)

                                                 cATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAacac                                        >  1:42645/1‑93 (MQ=255)

                                                  aTGGAAATTGCCAGGCCCAACCCTTTCATATTAATGACGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAAcacc                                       >  2:1805638/1‑93 (MQ=255)

                                                  aTGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAAcacc                                       <  2:4016625/93‑1 (MQ=255)

                                                  aTGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAAcacc                                       <  1:1017824/93‑1 (MQ=255)

                                                      aaaTTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACAccacca                                   <  2:2113520/93‑1 (MQ=255)

                                                       aaTTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAg                                  <  2:7938829/93‑1 (MQ=255)

                                                        aTTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGc                                 >  1:123889/1‑93 (MQ=255)

                                                         ttGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCa                                <  1:7274325/93‑1 (MQ=255)

                                                         ttGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCa                                <  1:4411938/93‑1 (MQ=255)

                                                             cAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGcc                            >  1:1587854/1‑93 (MQ=255)

                                                             cAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGcc                            <  2:9210970/93‑1 (MQ=255)

                                                               ggCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGt                          <  2:7814834/93‑1 (MQ=255)

                                                                gCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTa                         >  1:8332378/1‑93 (MQ=255)

                                                                 cccAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTAc                        >  2:1174042/1‑93 (MQ=255)

                                                                 cccAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTAc                        >  1:275626/1‑93 (MQ=255)

                                                                 cccAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTAc                        <  1:763979/93‑1 (MQ=255)

                                                                  ccAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACt                       >  2:5931653/1‑93 (MQ=255)

                                                                   caccccTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTg                      <  2:4051911/90‑1 (MQ=255)

                                                                   cAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTg                      >  1:4605723/1‑93 (MQ=255)

                                                                    aaCCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGa                     >  1:566974/1‑93 (MQ=255)

                                                                    aaCCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGa                     >  1:1764710/1‑93 (MQ=255)

                                                                     aCCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGAt                    <  1:6484791/93‑1 (MQ=255)

                                                                     aCCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGAt                    >  2:5028659/1‑93 (MQ=255)

                                                                     aCCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGAt                    >  2:7222458/1‑93 (MQ=255)

                                                                      cccTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATc                   >  1:4793674/1‑93 (MQ=255)

                                                                      cccTTTCATATTAATGAAGGAGGCAAAAATTAGGACAAAAATGGCACAGGCGATAAAGAACACCGCAAACACTACCAGCATGCCATACTGATc                   >  2:5594034/1‑93 (MQ=255)

                                                                       ccTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATcc                  <  1:8105577/93‑1 (MQ=255)

                                                                        cTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATccc                 >  1:1104272/1‑93 (MQ=255)

                                                                        cTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATccc                 >  1:9346919/1‑93 (MQ=255)

                                                                         tttCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCa                <  1:1445749/93‑1 (MQ=255)

                                                                           tCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGa              <  2:8545734/93‑1 (MQ=255)

                                                                            cATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGAt             >  2:1673202/1‑93 (MQ=255)

                                                                             atatTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATa            <  1:6805424/93‑1 (MQ=255)

                                                                             atatTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATa            <  1:3845737/93‑1 (MQ=255)

                                                                             atatTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATa            <  1:163394/93‑1 (MQ=255)

                                                                             atatTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATa            <  1:7758188/93‑1 (MQ=255)

                                                                             atatTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATa            <  1:1974491/93‑1 (MQ=255)

                                                                              tatTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATAc           <  1:1886081/93‑1 (MQ=255)

                                                                               atTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACg          >  2:9278746/1‑93 (MQ=255)

                                                                                ttAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGc         >  2:508195/1‑93 (MQ=255)

                                                                                 tAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGcc        >  2:608931/1‑93 (MQ=255)

                                                                                 tAAAGAAGGTGACAAAATTTGGAACAAAAATGCCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCATATTCGcc        <  2:10035554/93‑1 (MQ=255)

                                                                                  aaTGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGccc       >  1:2473474/1‑93 (MQ=255)

                                                                                    tGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGa     >  1:3733696/1‑93 (MQ=255)

                                                                                    tGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGa     >  2:3053333/1‑93 (MQ=255)

                                                                                     gAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGaa    <  1:5634349/93‑1 (MQ=255)

AGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGTGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGC  >  NC_000913/1981335‑1981514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAAAGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGTGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAA  >  NC_000913/1981332‑1981518

CAAAGTCCCCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGC                                                                                               <  SRR4302540.4645040/94‑1 (MQ=60)

CAAAGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGC                                                                                               <  SRR4302540.3133451/94‑1 (MQ=60)

 AAAGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCG                                                                                              <  SRR4302540.1269173/94‑1 (MQ=60)

  AAGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGG                                                                                             <  SRR4302540.2974221/94‑1 (MQ=60)

  AAGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGG                                                                                             <  SRR4302540.5855911/94‑1 (MQ=60)

    GTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCA                                                                                           >  SRR4302540.9274387/1‑94 (MQ=60)

      CACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAA                                                                                         >  SRR4302540.6738961/1‑94 (MQ=60)

      CACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAA                                                                                         >  SRR4302540.5234795/1‑94 (MQ=60)

       CCCGGAAGCGAGGCAGAACAACATGCTACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAA                                                                                        <  SRR4302540.8505998/94‑1 (MQ=60)

        ccgaaacaGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAAT                                                                                       <  SRR4302540.4401155/86‑1 (MQ=60)

        CCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAAT                                                                                       <  SRR4302540.4401154/94‑1 (MQ=60)

        CCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGCCCCAACCCTTTCATATTAATAAAGGCGCCAAAAT                                                                                       >  SRR4302540.8509985/1‑94 (MQ=60)

         CGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATT                                                                                      <  SRR4302540.2321742/94‑1 (MQ=60)

          GGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTT                                                                                     >  SRR4302540.3655785/1‑94 (MQ=60)

           GAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTG                                                                                    >  SRR4302540.3183199/1‑94 (MQ=60)

            AAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGG                                                                                   >  SRR4302540.9242445/1‑94 (MQ=60)

            AAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGG                                                                                   >  SRR4302540.7480326/1‑94 (MQ=60)

            AAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGG                                                                                   >  SRR4302540.7480328/1‑94 (MQ=60)

            AAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGG                                                                                   <  SRR4302540.6676828/94‑1 (MQ=60)

            AAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGG                                                                                   <  SRR4302540.6676829/94‑1 (MQ=60)

            AAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGG                                                                                   >  SRR4302540.1678364/1‑94 (MQ=60)

            AAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGG                                                                                   >  SRR4302540.5709605/1‑94 (MQ=60)

            AAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGG                                                                                   >  SRR4302540.5709606/1‑94 (MQ=60)

             AGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGG                                                                                  >  SRR4302540.8421428/1‑94 (MQ=60)

               CGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGAC                                                                                >  SRR4302540.570706/1‑94 (MQ=60)

                GAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACA                                                                               >  SRR4302540.1952785/1‑94 (MQ=60)

                GAGGAAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACA                                                                               <  SRR4302540.8711804/94‑1 (MQ=60)

                 AGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAA                                                                              >  SRR4302540.4993609/1‑94 (MQ=60)

                 AGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAA                                                                              <  SRR4302540.3430539/94‑1 (MQ=60)

                     AGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAACTTTGGGACAAAAAT                                                                          >  SRR4302540.6543918/1‑94 (MQ=60)

                     AGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAAT                                                                          <  SRR4302540.1870551/94‑1 (MQ=60)

                     AGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAAT                                                                          <  SRR4302540.5976578/94‑1 (MQ=60)

                      AAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATG                                                                         <  SRR4302540.93484/94‑1 (MQ=60)

                        ACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGC                                                                       <  SRR4302540.10093749/94‑1 (MQ=60)

                         CAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCA                                                                      <  SRR4302540.4107992/94‑1 (MQ=60)

                         CAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCA                                                                      >  SRR4302540.8744833/1‑94 (MQ=60)

                          AACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCAC                                                                     >  SRR4302540.1038683/1‑94 (MQ=60)

                          AACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCAC                                                                     <  SRR4302540.9290526/94‑1 (MQ=60)

                          AACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCAC                                                                     <  SRR4302540.3251500/94‑1 (MQ=60)

                           ACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACA                                                                    <  SRR4302540.2811652/94‑1 (MQ=60)

                           ACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGA‑AAAAATGGCACAG                                                                   >  SRR4302540.5875423/1‑94 (MQ=60)

                            catgcccaaagcccacacCCCCGACATGCAAATTGCCAGGCCCAACCCTTTCATATGAAGGAACGCGGCAAAATTGGGGACAAAAATGGCACAG                                                                   <  SRR4302540.5586357/76‑1 (MQ=56)

                            CATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAG                                                                   <  SRR4302540.5586093/94‑1 (MQ=60)

                              TGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGC                                                                 <  SRR4302540.2704982/94‑1 (MQ=60)

                               GCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCG                                                                <  SRR4302540.3238068/94‑1 (MQ=60)

                               GCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCG                                                                <  SRR4302540.6550898/94‑1 (MQ=60)

                               GCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCG                                                                >  SRR4302540.5967723/1‑94 (MQ=60)

                               GCCACAACCCCCCATCCCCGACATGGAAAGTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCG                                                                <  SRR4302540.6550900/94‑1 (MQ=60)

                                 CACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGAT                                                              >  SRR4302540.6258196/1‑94 (MQ=60)

                                  AGAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATA                                                             <  SRR4302540.8295367/94‑1 (MQ=60)

                                  ACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATA                                                             >  SRR4302540.6464353/1‑94 (MQ=60)

                                  ACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATA                                                             <  SRR4302540.8295368/94‑1 (MQ=60)

                                    AAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAA                                                           >  SRR4302540.3218673/1‑94 (MQ=60)

                                    AAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAA                                                           >  SRR4302540.8843966/1‑94 (MQ=60)

                                    AAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAA                                                           <  SRR4302540.3120125/94‑1 (MQ=60)

                                    AAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAA                                                           <  SRR4302540.8065936/94‑1 (MQ=60)

                                     AGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAG                                                          <  SRR4302540.9204301/94‑1 (MQ=60)

                                     AGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAG                                                          >  SRR4302540.7124394/1‑94 (MQ=60)

                                     AGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAG                                                          <  SRR4302540.1151836/94‑1 (MQ=60)

                                     AGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAG                                                          >  SRR4302540.8055085/1‑94 (MQ=60)

                                      GCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGA                                                         <  SRR4302540.5419776/94‑1 (MQ=60)

                                      GCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGA                                                         >  SRR4302540.2884259/1‑94 (MQ=60)

                                      GCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGA                                                         <  SRR4302540.2074727/94‑1 (MQ=60)

                                       CCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAG                                                        <  SRR4302540.6490284/94‑1 (MQ=60)

                                       CCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAG                                                        >  SRR4302540.7396791/1‑94 (MQ=60)

                                        CACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAACGAGC                                                       >  SRR4302540.5752465/1‑94 (MQ=60)

                                        CACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGC                                                       >  SRR4302540.5752466/1‑94 (MQ=60)

                                        CACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGC                                                       >  SRR4302540.6605660/1‑94 (MQ=60)

                                         ACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCA                                                      >  SRR4302540.5141097/1‑94 (MQ=60)

                                           CATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACC                                                    >  SRR4302540.1527577/1‑94 (MQ=60)

                                           CATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACC                                                    <  SRR4302540.9131419/94‑1 (MQ=60)

                                           CATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACC                                                    >  SRR4302540.5352965/1‑94 (MQ=60)

                                           CATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACC                                                    >  SRR4302540.4491163/1‑94 (MQ=60)

                                           CATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACC                                                    >  SRR4302540.4491164/1‑94 (MQ=60)

                                            ATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCG                                                   >  SRR4302540.8312394/1‑94 (MQ=60)

                                            ATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCG                                                   >  SRR4302540.3381860/1‑94 (MQ=60)

                                            ATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGAACAGGCGATAAAGAGCACCG                                                   >  SRR4302540.8293634/1‑94 (MQ=60)

                                              CCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCA                                                 >  SRR4302540.4897313/1‑94 (MQ=60)

                                               CCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAA                                                >  SRR4302540.5217364/1‑94 (MQ=60)

                                               CCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAA                                                >  SRR4302540.3713470/1‑94 (MQ=60)

                                               CCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAA                                                >  SRR4302540.3713471/1‑94 (MQ=60)

                                                CCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAA                                               >  SRR4302540.7658453/1‑94 (MQ=60)

                                                CCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAA                                               >  SRR4302540.8565692/1‑94 (MQ=60)

                                                 CGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAAC                                              <  SRR4302540.5696710/94‑1 (MQ=60)

                                                  GACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACA                                             <  SRR4302540.8069944/94‑1 (MQ=60)

                                                   ACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACAC                                            >  SRR4302540.5122272/1‑94 (MQ=60)

                                                   ACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACAC                                            >  SRR4302540.43083/1‑94 (MQ=60)

                                                     ATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCA                                          <  SRR4302540.1028134/94‑1 (MQ=60)

                                                     ATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCA                                          <  SRR4302540.1028135/94‑1 (MQ=60)

                                                       GGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACC                                        <  SRR4302540.1930437/94‑1 (MQ=60)

                                                       GGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACC                                        >  SRR4302540.2038065/1‑94 (MQ=60)

                                                         AAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGTGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAG                                      <  SRR4302540.5887426/94‑1 (MQ=60)

                                                          AATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGC                                     >  SRR4302540.125208/1‑94 (MQ=60)

                                                           ATTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCA                                    <  SRR4302540.118937/94‑1 (MQ=60)

                                                            TTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCAT                                   <  SRR4302540.7355496/94‑1 (MQ=60)

                                                            TTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCAT                                   <  SRR4302540.4459758/94‑1 (MQ=60)

                                                            TTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCAT                                   <  SRR4302540.608754/94‑1 (MQ=60)

                                                            TTGCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCAT                                   <  SRR4302540.8869504/94‑1 (MQ=60)

                                                              GCCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGC                                 >  SRR4302540.4152901/1‑94 (MQ=60)

                                                               CCAGGCCCACCCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCACACACCA‑CAGCATGGCG                               >  SRR4302540.1605201/1‑94 (MQ=60)

                                                               CCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCC                                >  SRR4302540.1605200/1‑94 (MQ=60)

                                                               CCAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCC                                <  SRR4302540.3075986/94‑1 (MQ=60)

                                                                CAGGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCG                               >  SRR4302540.3824221/1‑94 (MQ=60)

                                                                  GGCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTA                             >  SRR4302540.8429097/1‑94 (MQ=60)

                                                                   GCCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTAC                            >  SRR4302540.278339/1‑94 (MQ=60)

                                                                    CCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACT                           >  SRR4302540.7676953/1‑94 (MQ=60)

                                                                    CCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACT                           >  SRR4302540.3715569/1‑94 (MQ=60)

                                                                    CCCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACT                           <  SRR4302540.772113/94‑1 (MQ=60)

                                                                     CCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTG                          >  SRR4302540.4655192/1‑94 (MQ=60)

                                                                     CCAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTG                          >  SRR4302540.1476890/1‑94 (MQ=60)

                                                                      CAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGA                         >  SRR4302540.1783851/1‑94 (MQ=60)

                                                                      CAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGA                         >  SRR4302540.885207/1‑94 (MQ=60)

                                                                      CAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGA                         >  SRR4302540.1324367/1‑94 (MQ=60)

                                                                      CAACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGA                         >  SRR4302540.573133/1‑94 (MQ=60)

                                                                        ACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATC                       <  SRR4302540.6556914/94‑1 (MQ=60)

                                                                        ACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATC                       >  SRR4302540.7591886/1‑94 (MQ=60)

                                                                        ACCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATC                       >  SRR4302540.4844949/1‑94 (MQ=60)

                                                                         CCCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATTGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCC                      <  SRR4302540.7780903/94‑1 (MQ=60)

                                                                          CCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCC                     >  SRR4302540.9458261/1‑94 (MQ=60)

                                                                          CCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCC                     <  SRR4302540.8199652/94‑1 (MQ=60)

                                                                          CCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCC                     <  SRR4302540.8199653/94‑1 (MQ=60)

                                                                          CCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCC                     >  SRR4302540.1115656/1‑94 (MQ=60)

                                                                          CCTTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCC                     >  SRR4302540.1115655/1‑94 (MQ=60)

                                                                            TTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAG                   <  SRR4302540.1461467/94‑1 (MQ=60)

                                                                            TTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAG                   >  SRR4302540.9604611/1‑94 (MQ=60)

                                                                            TTTCATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAG                   >  SRR4302540.5381564/1‑94 (MQ=60)

                                                                               CATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATA                <  SRR4302540.8766952/94‑1 (MQ=60)

                                                                                ATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATAC               <  SRR4302540.6880728/94‑1 (MQ=60)

                                                                                ATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATAC               >  SRR4302540.3846129/1‑94 (MQ=60)

                                                                                ATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATAC               <  SRR4302540.3887558/94‑1 (MQ=60)

                                                                                ATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATAC               <  SRR4302540.165030/94‑1 (MQ=60)

                                                                                ATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATAC               <  SRR4302540.165031/94‑1 (MQ=60)

                                                                                ATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATAC               >  SRR4302540.9194710/1‑94 (MQ=60)

                                                                                ATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATAC               <  SRR4302540.1995920/94‑1 (MQ=60)

                                                                                ATATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATAC               <  SRR4302540.7848843/94‑1 (MQ=60)

                                                                                 TATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACG              <  SRR4302540.1906730/94‑1 (MQ=60)

                                                                                 TATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACG              >  SRR4302540.3490530/1‑94 (MQ=60)

                                                                                  ATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGC             >  SRR4302540.4293948/1‑94 (MQ=60)

                                                                                  ATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGC             >  SRR4302540.3148916/1‑94 (MQ=60)

                                                                                  ATTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGC             >  SRR4302540.3978773/1‑94 (MQ=60)

                                                                                   TTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCC            <  SRR4302540.8268654/94‑1 (MQ=60)

                                                                                   TTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCC            <  SRR4302540.4685712/94‑1 (MQ=60)

                                                                                   TTAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCC            >  SRR4302540.7816230/1‑94 (MQ=60)

                                                                                    TAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCC           >  SRR4302540.3658201/1‑94 (MQ=60)

                                                                                    TAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCC           >  SRR4302540.2500102/1‑94 (MQ=60)

                                                                                    TAATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCC           <  SRR4302540.2095312/94‑1 (MQ=60)

                                                                                      ATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGA         >  SRR4302540.3774432/1‑94 (MQ=60)

                                                                                      ATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGA         <  SRR4302540.3379473/94‑1 (MQ=60)

                                                                                      ATGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGA         >  SRR4302540.7257171/1‑94 (MQ=60)

                                                                                       TGAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAA        >  SRR4302540.2879869/1‑94 (MQ=60)

                                                                                        GAAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAG       <  SRR4302540.5696361/94‑1 (MQ=60)

                                                                                         AAGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGC      >  SRR4302540.651829/1‑94 (MQ=60)

                                                                                          AGGCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCT     >  SRR4302540.5226438/1‑94 (MQ=60)

                                                                                            GCGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGA   >  SRR4302540.1250774/1‑94 (MQ=60)

                                                                                             CGGCAAAATTTGGTACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAA  <  SRR4302540.1461914/94‑1 (MQ=60)

                                                                                             CGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAA  >  SRR4302540.1534565/1‑94 (MQ=60)

                                                                                             CGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAA  >  SRR4302540.6015678/1‑94 (MQ=60)

CAAAGTCACCGGAAGCGAGGCAGAACAACATGCCACAAGCCACCATCCCCGACATGGAAATTGCCAGGCCCAACCCTTTCATATTAATGAAGGTGGCAAAATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAA  >  NC_000913/1981332‑1981518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`