Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I1 R1 | 1548 | 369.5 | 20095359 | 96.9% | 19472402 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,010,781 | T→C | N86N (AAT→AAC) I86V (ATT→GTT) |
b1936 → fliE ← |
hypothetical protein FliE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,010,781 | 0 | T | C | 99.3% | 985.2 / ‑5.2 | 305 | N86N (AAT→AAC) I86V (ATT→GTT) | b1936 fliE | hypothetical protein FliE |
| Reads supporting (aligned to +/- strand): ref base T (1/0); major base C (159/143); minor base A (2/0); total (162/143) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 322 total aligned reads displayed.
ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTG > NC_000913/2010691‑2010870 | aTCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAccc < 1:3837080/93‑1 (MQ=255)aTCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAccc > 1:6656768/1‑93 (MQ=255)aTCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTCCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAccc < 2:7911723/93‑1 (MQ=255) tCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAcccc > 1:2129193/1‑93 (MQ=255) ggATGTAATTAACAACAGGTTACAAACCCTACCCCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCa < 2:7672809/93‑1 (MQ=255) ggATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCa > 1:1550683/1‑93 (MQ=255) ggATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCa > 2:2546684/1‑93 (MQ=255) aTGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAtt > 2:6950233/1‑93 (MQ=255) tGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAttt > 1:8642106/1‑93 (MQ=255) tAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGc > 1:131543/1‑93 (MQ=255) aaTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCa > 1:9697724/1‑93 (MQ=255) aacaacAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGa > 2:3352725/1‑93 (MQ=255) aacaacAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGa > 1:3445659/1‑93 (MQ=255) acaacaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGaa > 1:703838/1‑93 (MQ=255) caacaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGaaa < 2:8998014/93‑1 (MQ=255) aacaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAAc < 2:66658/93‑1 (MQ=255) aacaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAAc < 1:4282798/93‑1 (MQ=255) acaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACt < 1:9028962/93‑1 (MQ=255) caGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTg > 2:961723/1‑93 (MQ=255) aGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGa > 1:9162193/1‑93 (MQ=255) aGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGa < 2:352205/93‑1 (MQ=255) aGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGa > 2:4634484/1‑93 (MQ=255) ggTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAg > 1:8843949/1‑93 (MQ=255) aCAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCtt < 1:4119698/93‑1 (MQ=255) aCAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCtt > 1:5534238/1‑93 (MQ=255) cAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCttt < 2:8217364/93‑1 (MQ=255) aaaaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACTAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCtgtt > 2:8921165/1‑93 (MQ=255) aaaaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCtttt > 2:7079325/1‑93 (MQ=255) aaaaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCtttt < 2:8890121/93‑1 (MQ=255) aaaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCttttt < 1:3722357/93‑1 (MQ=255) aaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTg < 1:4661236/93‑1 (MQ=255) ccTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCAACTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCa > 2:2946386/1‑93 (MQ=255) tACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCata > 2:146429/1‑93 (MQ=255) tACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCata > 1:3295394/1‑93 (MQ=255) acacCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCatat > 2:807852/1‑93 (MQ=255) acacCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCatat > 1:513125/1‑93 (MQ=255) acacCCGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCatat > 1:2565581/1‑93 (MQ=255) cacCTGCATGCTCATCACTTCCTGATACGCCGCCACCCGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGGTTTTTGCATATc > 2:6010356/1‑93 (MQ=255) cacCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc < 2:6280027/93‑1 (MQ=255) cacCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc < 1:3394157/93‑1 (MQ=255) acCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCg < 2:9527415/93‑1 (MQ=255) ccTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCgg > 2:1031490/1‑93 (MQ=255) cTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt > 1:6020072/1‑93 (MQ=255) cTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt < 1:2304328/93‑1 (MQ=255) gCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtca < 2:4534655/93‑1 (MQ=255) cATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcat > 1:9407726/1‑93 (MQ=255) aTGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatc < 1:8454792/93‑1 (MQ=255) aTGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatc > 1:1479273/1‑93 (MQ=255) tGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTTAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatca < 2:4958023/93‑1 (MQ=255) tGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatca > 1:3573426/1‑93 (MQ=255) gCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcac > 1:8114391/1‑93 (MQ=255) cTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcaca > 1:9964717/1‑93 (MQ=255) tcatcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACAt < 2:7328279/93‑1 (MQ=255) tcatcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACAt < 1:3465859/93‑1 (MQ=255) tcatcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACAt > 2:2310612/1‑93 (MQ=255) tcatcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACAt < 2:1994469/93‑1 (MQ=255) catcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc < 1:1168617/93‑1 (MQ=255) atcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCg > 1:537409/1‑93 (MQ=255) tcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGt > 2:1106903/1‑93 (MQ=255) ccTTCCTGATACGCCGCCACCAGCTTATTCCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGttt < 1:3976830/92‑1 (MQ=255) aCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGttt < 1:822615/93‑1 (MQ=255) cTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTa > 1:327170/1‑93 (MQ=255) ttCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTaa > 1:7305885/1‑93 (MQ=255) ttCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTaa < 1:5087163/93‑1 (MQ=255) tCCTGATGCGCCGCCAACAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAac < 2:3105369/93‑1 (MQ=255) tCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAac > 2:2177288/1‑93 (MQ=255) tCCTGATACGCCGCCACCAGCTTATTACGCAACTGAAACCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAac > 2:6435781/1‑93 (MQ=255) ccTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacg > 2:4811890/1‑93 (MQ=255) cTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgc < 1:4531974/93‑1 (MQ=255) tGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgcc > 2:5331691/1‑93 (MQ=255) gATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgcca > 1:2852319/1‑93 (MQ=255) aCGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgc < 2:8364422/93‑1 (MQ=255) cgccgcCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgcc < 1:472737/93‑1 (MQ=255) ccgccACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCgg > 2:3948470/1‑93 (MQ=255) gccACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGt < 2:3281851/93‑1 (MQ=255) ccaccaGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGtt < 2:9674870/93‑1 (MQ=255) ccaGCTTATTACGCACCTGAATCACCATTTGCCTAGAAACTGAGGCTTTTTGCATATCAGTCATCACATCGTTTAACGCCACGCCGGGGTCAc > 2:8841908/1‑93 (MQ=255) caGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAcc < 2:424166/93‑1 (MQ=255) caGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAcc < 1:3013139/93‑1 (MQ=255) aGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGCTTAACGCCACGCCGGGTTCACCg > 2:8679742/1‑93 (MQ=255) gCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCga < 1:7716954/93‑1 (MQ=255) cTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCgag > 1:4863052/1‑93 (MQ=255) ttattaCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCgaga < 1:631987/93‑1 (MQ=255) ttattaCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCgaga > 1:2437949/1‑93 (MQ=255) ctattaCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTGTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCgaga < 1:6263596/92‑1 (MQ=255) tattaCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGagag > 2:1891557/1‑93 (MQ=255) attaCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGt > 2:1290326/1‑93 (MQ=255) aCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGaa < 1:5041607/93‑1 (MQ=255) gCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAtt < 2:8583486/93‑1 (MQ=255) gCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTAACCGAGAGTGAAtt > 1:10025623/1‑93 (MQ=255) cACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAttt < 2:9396954/93‑1 (MQ=255) cACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAttt > 1:1707590/1‑93 (MQ=255) aCCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAtttt < 1:5289394/93‑1 (MQ=255) aCCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAtttt > 2:2732457/1‑93 (MQ=255) ccTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAttttt > 2:572309/1‑93 (MQ=255) ccTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAttttt > 1:7893790/1‑93 (MQ=255) cTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTc < 1:4407326/93‑1 (MQ=255) cTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTc < 1:7114114/93‑1 (MQ=255) tGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTct > 2:7549354/1‑93 (MQ=255) tGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTct > 2:4181767/1‑93 (MQ=255) | ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTG > NC_000913/2010691‑2010870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
GAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTG > NC_000913/2010688‑2010874 | GAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAC < SRR4302540.8846118/94‑1 (MQ=60)GAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAC > SRR4302540.900402/1‑94 (MQ=60) AGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACC < SRR4302540.2363854/94‑1 (MQ=60) GATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCC > SRR4302540.6730377/1‑94 (MQ=60) ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCC < SRR4302540.3878816/94‑1 (MQ=60) ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCC > SRR4302540.2152040/1‑94 (MQ=60) ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCC > SRR4302540.9115258/1‑94 (MQ=60) CGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCA < SRR4302540.2016101/94‑1 (MQ=60) CGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCA > SRR4302540.1567772/1‑94 (MQ=60) GGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAT > SRR4302540.537024/1‑94 (MQ=60) GGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAT > SRR4302540.8685425/1‑94 (MQ=60) ATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTT > SRR4302540.6664792/1‑94 (MQ=60) ATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTT < SRR4302540.540134/94‑1 (MQ=60) ATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTT > SRR4302540.8742493/1‑94 (MQ=60) GTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGC < SRR4302540.8997753/94‑1 (MQ=60) GTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGC > SRR4302540.132925/1‑94 (MQ=60) TAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCA < SRR4302540.2765852/94‑1 (MQ=60) TAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCA > SRR4302540.5176558/1‑94 (MQ=60) TAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCA > SRR4302540.9811746/1‑94 (MQ=60) ATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATA > SRR4302540.4997009/1‑94 (MQ=60) ATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATA > SRR4302540.343184/1‑94 (MQ=60) ATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATA > SRR4302540.7131167/1‑94 (MQ=60) TTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAG > SRR4302540.2953778/1‑94 (MQ=60) TAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGA > SRR4302540.3483133/1‑94 (MQ=60) TAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGA > SRR4302540.3483134/1‑94 (MQ=60) AACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAA > SRR4302540.8733701/1‑94 (MQ=60) AACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAA > SRR4302540.711397/1‑94 (MQ=60) ACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAA > SRR4302540.2694430/1‑94 (MQ=60) ACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAA > SRR4302540.683905/1‑94 (MQ=60) CAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGACCCCCCATTTGCATAGAAAC < SRR4302540.829991/94‑1 (MQ=60) CAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAAC > SRR4302540.2175928/1‑94 (MQ=60) CAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAAC < SRR4302540.131272/94‑1 (MQ=60) CAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAAC < SRR4302540.1643392/94‑1 (MQ=60) AACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACT < SRR4302540.4329382/94‑1 (MQ=60) ACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTG < SRR4302540.9137308/94‑1 (MQ=60) CAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGA < SRR4302540.2481608/94‑1 (MQ=60) CAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGA < SRR4302540.4898086/94‑1 (MQ=60) CAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGA > SRR4302540.9272150/1‑94 (MQ=60) CAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGA < SRR4302540.9368145/94‑1 (MQ=60) AGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAG > SRR4302540.8946254/1‑94 (MQ=60) GGTTACAAAACCTACCCCTGCATGCTCATCCCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGG < SRR4302540.7276886/94‑1 (MQ=60) GGTTACAAAACCTACACCTGCATGCTCATAACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGG < SRR4302540.9655530/94‑1 (MQ=60) GTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGC > SRR4302540.1535030/1‑94 (MQ=60) GTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGC < SRR4302540.7471987/94‑1 (MQ=60) GTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGC > SRR4302540.5582823/1‑94 (MQ=60) TTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCT < SRR4302540.9819312/94‑1 (MQ=60) TACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTT > SRR4302540.5595181/1‑94 (MQ=60) TACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTT > SRR4302540.5595180/1‑94 (MQ=60) ACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTT < SRR4302540.4164180/94‑1 (MQ=60) ACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTT < SRR4302540.4164181/94‑1 (MQ=60) ACAAAACCTACACCGGCATGCTCATCACTTCGTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTGGCATAGAAACTGAGGCTTT < SRR4302540.5126703/94‑1 (MQ=60) AAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGTTTTTT > SRR4302540.8540653/1‑94 (MQ=60) AAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTT > SRR4302540.8073761/1‑94 (MQ=60) AAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTT < SRR4302540.10143877/94‑1 (MQ=60) AAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTT < SRR4302540.4520357/94‑1 (MQ=60) AAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTG < SRR4302540.6427439/94‑1 (MQ=60) AAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTG > SRR4302540.3339871/1‑94 (MQ=60) AAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTG > SRR4302540.8344667/1‑94 (MQ=60) AAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTG > SRR4302540.4483599/1‑94 (MQ=60) AAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTG < SRR4302540.3762967/94‑1 (MQ=60) AAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTG < SRR4302540.3762968/94‑1 (MQ=60) AACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGC < SRR4302540.4711133/94‑1 (MQ=60) ACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCA > SRR4302540.6182767/1‑94 (MQ=60) ACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCA < SRR4302540.1360988/94‑1 (MQ=60) CCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCAT < SRR4302540.433862/94‑1 (MQ=60) CCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCAT > SRR4302540.1574847/1‑94 (MQ=60) CTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATA > SRR4302540.3331458/1‑94 (MQ=60) TACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATAT > SRR4302540.518636/1‑94 (MQ=60) TACACCCGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATAT > SRR4302540.2593238/1‑94 (MQ=60) ACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATC > SRR4302540.5081311/1‑94 (MQ=60) ACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATC < SRR4302540.2455477/94‑1 (MQ=60) ACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATC < SRR4302540.7955746/94‑1 (MQ=60) CACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCG < SRR4302540.4737183/94‑1 (MQ=60) CACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCG < SRR4302540.3431182/94‑1 (MQ=60) CCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGT < SRR4302540.4044276/94‑1 (MQ=60) CCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGT > SRR4302540.6086843/1‑94 (MQ=60) CCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGC > SRR4302540.3499820/1‑94 (MQ=60) CTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTC < SRR4302540.6318144/94‑1 (MQ=60) CTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTC < SRR4302540.2329124/94‑1 (MQ=60) TGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCA < SRR4302540.2167371/94‑1 (MQ=60) GCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCAT > SRR4302540.9519607/1‑94 (MQ=60) CATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATC < SRR4302540.253025/94‑1 (MQ=60) CATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATC > SRR4302540.493791/1‑94 (MQ=60) CATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATC > SRR4302540.1495470/1‑94 (MQ=60) CATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATC > SRR4302540.4422067/1‑94 (MQ=60) ATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCA < SRR4302540.8552967/94‑1 (MQ=60) ATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCA > SRR4302540.3823298/1‑94 (MQ=60) ATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCA < SRR4302540.7725715/94‑1 (MQ=60) ATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCA < SRR4302540.6694415/94‑1 (MQ=60) ATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCA < SRR4302540.1475960/94‑1 (MQ=60) ATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCA > SRR4302540.3612457/1‑94 (MQ=60) TGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCAC > SRR4302540.8208571/1‑94 (MQ=60) TGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCAC > SRR4302540.1281831/1‑94 (MQ=60) GCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTTATCACA < SRR4302540.3035338/94‑1 (MQ=60) GCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACA > SRR4302540.10080976/1‑94 (MQ=60) GCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACA > SRR4302540.10089982/1‑94 (MQ=60) GCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACA < SRR4302540.5243851/94‑1 (MQ=60) TCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATC < SRR4302540.3503586/94‑1 (MQ=60) CATCCCTTCCCGGTACGCCGCCCCCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCG < SRR4302540.3575851/94‑1 (MQ=60) CATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCG < SRR4302540.3880149/94‑1 (MQ=60) CATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCG > SRR4302540.5676746/1‑94 (MQ=60) CATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCG > SRR4302540.3376188/1‑94 (MQ=60) CATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCG < SRR4302540.1180722/94‑1 (MQ=60) CATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCG > SRR4302540.3642108/1‑94 (MQ=60) CATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCG > SRR4302540.543227/1‑94 (MQ=60) TCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTT > SRR4302540.2023463/1‑94 (MQ=60) CCTTCCTGATACGCCGCCACCAGCTTATTCCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTA < SRR4302540.4019674/94‑1 (MQ=60) ACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTA < SRR4302540.831358/94‑1 (MQ=60) ACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTA > SRR4302540.330448/1‑94 (MQ=60) ACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTA < SRR4302540.9782863/94‑1 (MQ=60) ACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTA > SRR4302540.5143397/1‑94 (MQ=60) CTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAA < SRR4302540.3188933/94‑1 (MQ=60) CTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAA < SRR4302540.3895224/94‑1 (MQ=60) CTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAA < SRR4302540.3267120/94‑1 (MQ=60) CTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAA > SRR4302540.4625074/1‑94 (MQ=60) CTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAA > SRR4302540.4625073/1‑94 (MQ=60) CTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAA > SRR4302540.7387442/1‑94 (MQ=60) TTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAAC < SRR4302540.9253881/94‑1 (MQ=60) TTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAAC < SRR4302540.5142165/94‑1 (MQ=60) TCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACG > SRR4302540.5223894/1‑94 (MQ=60) CTGATACGCCGCCACCAGCTTATTACGCACCTGCACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCC < SRR4302540.7118555/94‑1 (MQ=60) CTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCC < SRR4302540.4581028/94‑1 (MQ=60) TGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCA > SRR4302540.2883220/1‑94 (MQ=60) TGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCA > SRR4302540.3450407/1‑94 (MQ=60) GATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCAC < SRR4302540.4902916/94‑1 (MQ=60) ATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACG < SRR4302540.3754298/94‑1 (MQ=60) ACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCC < SRR4302540.4206423/94‑1 (MQ=60) CGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCG < SRR4302540.477799/94‑1 (MQ=60) GCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGG < SRR4302540.9278256/94‑1 (MQ=60) CCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGG > SRR4302540.6953636/1‑94 (MQ=60) CGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGT < SRR4302540.1601319/94‑1 (MQ=60) GCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTT < SRR4302540.1531680/94‑1 (MQ=60) GCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTT > SRR4302540.2851149/1‑94 (MQ=60) ACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAC > SRR4302540.4087118/1‑94 (MQ=60) ACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAC > SRR4302540.10042692/1‑94 (MQ=60) CCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACC > SRR4302540.340625/1‑94 (MQ=60) CCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACC < SRR4302540.3830096/94‑1 (MQ=60) CCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACC > SRR4302540.8132882/1‑94 (MQ=60) CCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACC < SRR4302540.3320839/94‑1 (MQ=60) CAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCG < SRR4302540.3046279/94‑1 (MQ=60) AGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGA > SRR4302540.4339777/1‑94 (MQ=60) AGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGA > SRR4302540.8294687/1‑94 (MQ=60) AGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGA > SRR4302540.7373357/1‑94 (MQ=60) GCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAG < SRR4302540.5394945/94‑1 (MQ=60) GCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAG < SRR4302540.7806119/94‑1 (MQ=60) GCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAG > SRR4302540.4915202/1‑94 (MQ=60) GCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAG < SRR4302540.1015911/94‑1 (MQ=60) CTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGA > SRR4302540.2464203/1‑94 (MQ=60) CTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGA > SRR4302540.2331814/1‑94 (MQ=60) TTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAG < SRR4302540.6333279/94‑1 (MQ=60) TTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAG < SRR4302540.638706/94‑1 (MQ=60) CTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAG < SRR4302540.3596821/94‑1 (MQ=60) CTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTGTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAG < SRR4302540.6333278/94‑1 (MQ=60) TATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGT > SRR4302540.8834347/1‑94 (MQ=60) TATTACGCACCTGAACCCCCATTTGCACAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCGACGCCGGGTTCACCGAGAGG > SRR4302540.8834348/1‑94 (MQ=60) TATTACGCACCTGAAACCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGT > SRR4302540.5136390/1‑94 (MQ=60) ATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTG > SRR4302540.4725330/1‑94 (MQ=60) ATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTG > SRR4302540.8665388/1‑94 (MQ=60) TTACGCACCTGATCCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATTGTTTAACGCCACGCCGGGTTCACCGAGAGTGA < SRR4302540.6370449/94‑1 (MQ=60) TTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGA < SRR4302540.5504477/94‑1 (MQ=60) TTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGA > SRR4302540.7800462/1‑94 (MQ=60) ACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAT < SRR4302540.5096139/94‑1 (MQ=60) CGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTAACCGAGAGTGAATT > SRR4302540.10142279/1‑94 (MQ=60) GCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTT > SRR4302540.1726046/1‑94 (MQ=60) CACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTT > SRR4302540.9290644/1‑94 (MQ=60) ACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTT > SRR4302540.7985903/1‑94 (MQ=60) ACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTT < SRR4302540.5347208/94‑1 (MQ=60) CTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCT < SRR4302540.7193302/94‑1 (MQ=60) CTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCT < SRR4302540.3312773/94‑1 (MQ=60) CTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCT < SRR4302540.4455108/94‑1 (MQ=60) TGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTG > SRR4302540.7855915/1‑94 (MQ=60) GAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGC < SRR4302540.9192754/94‑1 (MQ=60) ACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCT < SRR4302540.7917736/94‑1 (MQ=60) ACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCT < SRR4302540.5148455/94‑1 (MQ=60) ACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCT > SRR4302540.6647826/1‑94 (MQ=60) CCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTG > SRR4302540.10123025/1‑94 (MQ=60) CCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTG > SRR4302540.2111176/1‑94 (MQ=60) | GAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTG > NC_000913/2010688‑2010874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |